MELO3C010360 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010360
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPlant-specific GATA-type zinc finger transcription factor family protein
Locationchr2 : 16907413 .. 16907586 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCAAAGAGGCCACTGAAGGAGAAGAAAGAGACCCCTGTCGCCATTAAACCTCAGTGGAGTTTAGGGCCCATCTCCTCAGCGGCACAACCTACCAAGCATAAGAGTGGGTTCAAGAAGAGAGAGACTGAAAAAAGCAAACCTAAACCATTAAAGGGGATGAAGAAGTAG

mRNA sequence

ATGGGAGCAAAGAGGCCACTGAAGGAGAAGAAAGAGACCCCTGTCGCCATTAAACCTCAGTGGAGTTTAGGGCCCATCTCCTCAGCGGCACAACCTACCAAGCATAAGAGTGGGTTCAAGAAGAGAGAGACTGAAAAAAGCAAACCTAAACCATTAAAGGGGATGAAGAAGTAG

Coding sequence (CDS)

ATGGGAGCAAAGAGGCCACTGAAGGAGAAGAAAGAGACCCCTGTCGCCATTAAACCTCAGTGGAGTTTAGGGCCCATCTCCTCAGCGGCACAACCTACCAAGCATAAGAGTGGGTTCAAGAAGAGAGAGACTGAAAAAAGCAAACCTAAACCATTAAAGGGGATGAAGAAGTAG

Protein sequence

MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK*
Homology
[Close]
BLAST of MELO3C010360 vs. TrEMBL
Match: A0A0A0LWE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G320330 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 58
          MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK
Sbjct: 1  MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 57

[Close]
BLAST of MELO3C010360 vs. NCBI nr
Match: gi|700210218|gb|KGN65314.1| (hypothetical protein Csa_1G320330 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 58
          MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK
Sbjct: 1  MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 57

The following BLAST results are available for this feature:
BLAST of MELO3C010360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWE6_CUCSA1.5e-24100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G320330 PE=4 SV=1[more]
BLAST of MELO3C010360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210218|gb|KGN65314.1|2.1e-24100.00hypothetical protein Csa_1G320330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU63538melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010360T1MELO3C010360T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU63538MU63538transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C010360Csa1G320330Cucumber (Chinese Long) v2cumeB061
MELO3C010360CSPI01G18690Wild cucumber (PI 183967)cpimeB060
MELO3C010360CmoCh10G006000Cucurbita moschata (Rifu)cmomeB049
MELO3C010360Cp4.1LG18g04820Cucurbita pepo (Zucchini)cpemeB334
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010360Cucurbita moschata (Rifu)cmomeB111
MELO3C010360Cucurbita moschata (Rifu)cmomeB140
MELO3C010360Cucurbita moschata (Rifu)cmomeB710
MELO3C010360Wild cucumber (PI 183967)cpimeB110
MELO3C010360Cucumber (Chinese Long) v2cumeB111
MELO3C010360Watermelon (Charleston Gray)mewcgB232
MELO3C010360Watermelon (Charleston Gray)mewcgB258
MELO3C010360Watermelon (97103) v1mewmB284
MELO3C010360Watermelon (97103) v1mewmB293
MELO3C010360Cucurbita pepo (Zucchini)cpemeB082
MELO3C010360Cucurbita pepo (Zucchini)cpemeB616
MELO3C010360Cucurbita pepo (Zucchini)cpemeB621
MELO3C010360Cucurbita pepo (Zucchini)cpemeB753
MELO3C010360Bottle gourd (USVL1VR-Ls)lsimeB102
MELO3C010360Bottle gourd (USVL1VR-Ls)lsimeB403
MELO3C010360Cucumber (Gy14) v2cgybmeB051
MELO3C010360Cucumber (Gy14) v2cgybmeB095
MELO3C010360Silver-seed gourdcarmeB0035
MELO3C010360Silver-seed gourdcarmeB0038
MELO3C010360Silver-seed gourdcarmeB0131
MELO3C010360Silver-seed gourdcarmeB0572
MELO3C010360Cucumber (Chinese Long) v3cucmeB057
MELO3C010360Cucumber (Chinese Long) v3cucmeB116
MELO3C010360Watermelon (97103) v2mewmbB239
MELO3C010360Watermelon (97103) v2mewmbB265
MELO3C010360Wax gourdmewgoB270
MELO3C010360Wax gourdmewgoB290
MELO3C010360Wax gourdmewgoB317
MELO3C010360Melon (DHL92) v3.5.1memeB104
MELO3C010360Cucurbita moschata (Rifu)cmomeB098
MELO3C010360Cucumber (Gy14) v1cgymeB213
MELO3C010360Cucumber (Gy14) v1cgymeB487
MELO3C010360Cucurbita maxima (Rimu)cmameB058
MELO3C010360Cucurbita maxima (Rimu)cmameB105
MELO3C010360Cucurbita maxima (Rimu)cmameB123
MELO3C010360Cucurbita maxima (Rimu)cmameB150
MELO3C010360Cucurbita maxima (Rimu)cmameB719