CmoCh10G006000 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G006000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr10 : 2718492 .. 2719110 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAAGAACTTACCAGAGGAGGTTGGATCATTCTCTCCATCTCTTCCCTTGTGGGAATATCAGCACAAGATAAATTTTCAAACTCCAACCACTACCCAACCTCACATTTGTCTGATCCTACAAGAACCATTTGAAAATAAGAAATGCATCACAGATTTCTAACACAGATTAGTCGCGGCAGGTCGGCTCTTCAAGCTTGTATATCCCACCTTGGCAAGTCCACAATTCAGGCTTGAAACACAGTAAATTAAAGTGGAAGAAAGAGAGCAAGCATGATTTGAGCATTATCTCAAAGACCCATTACAGAAATCAGAGATCTGCGCAGAGAAACCTCGTGTAAAGCTCGTCCCACAAGGTCTACAGACAAGAAATCAGAAACCCCAAATCTCATCTAGCTCACCAGAGCGGTCTGAGGAAGAATTAAATGCGAGACAGCAGAAAACAGGAGCAAAGAGGCCAATGAAGGAGGAGAAAGAGACCCCTGTGGCCATTAAACCTCAGTGGAGTTTAGGGCCCATGGCCTCAGCGGCACAACCTACCAAGTACAAGAGTGCGTTCAAGAAGAGAGAGACTGAAAAAAGCAAACCCAAACCATTAAAGGGGATCGAGAAATAG

mRNA sequence

ATGGATAAAGAACTTACCAGAGGAGACCCATTACAGAAATCAGAGATCTGCGCAGAGAAACCTCGTGTAAAGCTCGTCCCACAAGGTCTACAGACAAGAAATCAGAAACCCCAAATCTCATCTAGCTCACCAGAGCGGTCTGAGGAAGAATTAAATGCGAGACAGCAGAAAACAGGAGCAAAGAGGCCAATGAAGGAGGAGAAAGAGACCCCTGTGGCCATTAAACCTCAGTGGAGTTTAGGGCCCATGGCCTCAGCGGCACAACCTACCAAGTACAAGAGTGCGTTCAAGAAGAGAGAGACTGAAAAAAGCAAACCCAAACCATTAAAGGGGATCGAGAAATAG

Coding sequence (CDS)

ATGGATAAAGAACTTACCAGAGGAGACCCATTACAGAAATCAGAGATCTGCGCAGAGAAACCTCGTGTAAAGCTCGTCCCACAAGGTCTACAGACAAGAAATCAGAAACCCCAAATCTCATCTAGCTCACCAGAGCGGTCTGAGGAAGAATTAAATGCGAGACAGCAGAAAACAGGAGCAAAGAGGCCAATGAAGGAGGAGAAAGAGACCCCTGTGGCCATTAAACCTCAGTGGAGTTTAGGGCCCATGGCCTCAGCGGCACAACCTACCAAGTACAAGAGTGCGTTCAAGAAGAGAGAGACTGAAAAAAGCAAACCCAAACCATTAAAGGGGATCGAGAAATAG
Homology
[Close]
BLAST of CmoCh10G006000 vs. TrEMBL
Match: A0A0A0LWE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G320330 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 48/56 (85.71%), Postives = 55/56 (98.21%), Query Frame = 1 

Query: 59  GAKRPMKEEKETPVAIKPQWSLGPMASAAQPTKYKSAFKKRETEKSKPKPLKGIEK 115
           GAKRP+KE+KETPVAIKPQWSLGP++SAAQPTK+KS FKKRETEKSKPKPLKG++K
Sbjct: 2   GAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 57

[Close]
BLAST of CmoCh10G006000 vs. NCBI nr
Match: gi|700210218|gb|KGN65314.1| (hypothetical protein Csa_1G320330 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-17
Identity = 48/56 (85.71%), Postives = 55/56 (98.21%), Query Frame = 1 

Query: 59  GAKRPMKEEKETPVAIKPQWSLGPMASAAQPTKYKSAFKKRETEKSKPKPLKGIEK 115
           GAKRP+KE+KETPVAIKPQWSLGP++SAAQPTK+KS FKKRETEKSKPKPLKG++K
Sbjct: 2   GAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 57

The following BLAST results are available for this feature:
BLAST of CmoCh10G006000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh10G006000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWE6_CUCSA1.5e-1785.71Uncharacterized protein OS=Cucumis sativus GN=Csa_1G320330 PE=4 SV=1[more]
BLAST of CmoCh10G006000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh10G006000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210218|gb|KGN65314.1|2.2e-1785.71hypothetical protein Csa_1G320330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G006000.1CmoCh10G006000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh10G006000Csa1G320330Cucumber (Chinese Long) v2cmocuB051
CmoCh10G006000MELO3C010360Melon (DHL92) v3.5.1cmomeB049
CmoCh10G006000CSPI01G18690Wild cucumber (PI 183967)cmocpiB054
CmoCh10G006000Cp4.1LG18g04820Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G006000MELO3C010360.2Melon (DHL92) v3.6.1cmomedB052
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G006000Cucurbita pepo (Zucchini)cmocpeB048
CmoCh10G006000Cucurbita pepo (Zucchini)cmocpeB050
CmoCh10G006000Cucurbita pepo (Zucchini)cmocpeB052
CmoCh10G006000Cucurbita pepo (Zucchini)cmocpeB064
CmoCh10G006000Cucurbita pepo (Zucchini)cmocpeB077
CmoCh10G006000Cucurbita pepo (Zucchini)cmocpeB078
CmoCh10G006000Bottle gourd (USVL1VR-Ls)cmolsiB035
CmoCh10G006000Bottle gourd (USVL1VR-Ls)cmolsiB037
CmoCh10G006000Bottle gourd (USVL1VR-Ls)cmolsiB060
CmoCh10G006000Bottle gourd (USVL1VR-Ls)cmolsiB068
CmoCh10G006000Bottle gourd (USVL1VR-Ls)cmolsiB070
CmoCh10G006000Cucumber (Gy14) v2cgybcmoB016
CmoCh10G006000Cucumber (Gy14) v2cgybcmoB146
CmoCh10G006000Cucumber (Gy14) v2cgybcmoB147
CmoCh10G006000Cucumber (Gy14) v2cgybcmoB444
CmoCh10G006000Cucumber (Gy14) v2cgybcmoB874
CmoCh10G006000Melon (DHL92) v3.6.1cmomedB049
CmoCh10G006000Melon (DHL92) v3.6.1cmomedB070
CmoCh10G006000Melon (DHL92) v3.6.1cmomedB073
CmoCh10G006000Melon (DHL92) v3.6.1cmomedB077
CmoCh10G006000Silver-seed gourdcarcmoB0047
CmoCh10G006000Silver-seed gourdcarcmoB0048
CmoCh10G006000Silver-seed gourdcarcmoB0172
CmoCh10G006000Silver-seed gourdcarcmoB0353
CmoCh10G006000Silver-seed gourdcarcmoB0772
CmoCh10G006000Silver-seed gourdcarcmoB1372
CmoCh10G006000Cucumber (Chinese Long) v3cmocucB0056
CmoCh10G006000Cucumber (Chinese Long) v3cmocucB0070
CmoCh10G006000Cucumber (Chinese Long) v3cmocucB0071
CmoCh10G006000Cucumber (Chinese Long) v3cmocucB0079
CmoCh10G006000Cucumber (Chinese Long) v3cmocucB0086
CmoCh10G006000Watermelon (97103) v2cmowmbB070
CmoCh10G006000Watermelon (97103) v2cmowmbB044
CmoCh10G006000Watermelon (97103) v2cmowmbB073
CmoCh10G006000Watermelon (97103) v2cmowmbB075
CmoCh10G006000Watermelon (97103) v2cmowmbB077
CmoCh10G006000Wax gourdcmowgoB0045
CmoCh10G006000Wax gourdcmowgoB0051
CmoCh10G006000Wax gourdcmowgoB0054
CmoCh10G006000Wax gourdcmowgoB0065
CmoCh10G006000Wax gourdcmowgoB0070
CmoCh10G006000Wax gourdcmowgoB0086
CmoCh10G006000Cucurbita moschata (Rifu)cmocmoB038
CmoCh10G006000Cucurbita moschata (Rifu)cmocmoB046
CmoCh10G006000Cucurbita moschata (Rifu)cmocmoB050
CmoCh10G006000Cucurbita moschata (Rifu)cmocmoB059
CmoCh10G006000Cucurbita moschata (Rifu)cmocmoB069
CmoCh10G006000Cucurbita moschata (Rifu)cmocmoB075
CmoCh10G006000Cucumber (Gy14) v1cgycmoB0234
CmoCh10G006000Cucumber (Gy14) v1cgycmoB0355
CmoCh10G006000Cucumber (Gy14) v1cgycmoB0811
CmoCh10G006000Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G006000Cucurbita maxima (Rimu)cmacmoB099
CmoCh10G006000Cucurbita maxima (Rimu)cmacmoB108
CmoCh10G006000Cucurbita maxima (Rimu)cmacmoB169
CmoCh10G006000Cucurbita maxima (Rimu)cmacmoB757
CmoCh10G006000Wild cucumber (PI 183967)cmocpiB066
CmoCh10G006000Wild cucumber (PI 183967)cmocpiB074
CmoCh10G006000Cucumber (Chinese Long) v2cmocuB065
CmoCh10G006000Cucumber (Chinese Long) v2cmocuB072
CmoCh10G006000Melon (DHL92) v3.5.1cmomeB046
CmoCh10G006000Melon (DHL92) v3.5.1cmomeB067
CmoCh10G006000Watermelon (Charleston Gray)cmowcgB035
CmoCh10G006000Watermelon (Charleston Gray)cmowcgB039
CmoCh10G006000Watermelon (Charleston Gray)cmowcgB064
CmoCh10G006000Watermelon (97103) v1cmowmB035
CmoCh10G006000Watermelon (97103) v1cmowmB059
CmoCh10G006000Watermelon (97103) v1cmowmB063