Carg23713 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACTTTCTTGGGTTATGCAACTGGAAATCAAATGCGAAGATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATGGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAAAATCCGGAAGCCTTTGTATGTATTTCTGTTTGTTTAATATTTTGTGCATTATGTAGTATGATATGTTCTTGTTGTTTTCAAAGGTTCTATAGCTATTCAGTAAATCTACTTTGGTTTTATACATATATAATTTGCGACATTTAATCTAGTTCGAATTCCAAGCTTTTACGAATTCATTTATGCTTCTTGTTTGAGTTCATAAGCAATGAGGCACAAGTAAATCTCATGATATCGGTCTTGGCCGACACCTGATTGACGGTAGGGGAGCGGGTAATATGTATAGTAACTTATCAATTGTGTACATTATGTATGTGTCTCCGACCAGACGGGATTGGTGCTAAATGTCTTATTGATATAAAGTGACGTAGAGATGAGTACATTTGCTGGAACTGGCTTCTGAGTTCAGTTATGGCTTAATCAACAGAACTATGAACTTCACTGTTGTCTCGAACACGTAGTTATTATGTATCCTATTTTCCTTCACAACAAATTAGTCCGAAAAATAATTAGCTCAAGTCGAGCTGATGTCCCTTTTCAAGGGAAAAAAGAAAAAAGTGGTTATAGCTCTTTGCTTCTATGATCCTTGCCAATTGAAGAGCCTTTCATTAATTTCCTTGTTCTGTTGGTTTGTGGGTACTCATTGGAAGCAATATCTTTTTATTCAAGAGTTTGTTTTGGAATATATCACTTTGTAACAATTTATCAACTATGTAGCAGAGAAGTATGGGCTCTCAAATGGAATTTGTGCCTTCGAGCAACCATATATCTTCATCTTGTTCAGCATTCCAAAGTCTTAGGCCACATTCATATCAGTTGGCAGAGATTGCAGCTCCTTTTTCTAGGAGGGGTATTGCTACGACAAGTTCAACCGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAATACATAATGCAGGTATTCGCATTTCTGAGTACTTTTGGAAAAGAAGTAATTTGATTTTATCGTCCAGTCTGTTTGATTTCGATATATTGTTTTCTTTTCCCCACAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGTAGAGTTCATTTCAGTCAAATACTATATCAGCAGTTGTAGATGAGGTTACTGAACAATTTTCTGGCTTTTGCTGTCTTGTGTGAACAGGAAGTACCTGAGAACAAGCGACGTGTCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTGATACAAATGTATTAGAACATGATGAACGCTGCGATCACACGTGTTGAAGTTGGTGTATTAATATGAACATACATGTGTTTATTCTTCTTGTGTATGTCTATTTCTGATAGCACTTTGCTTATGACTAAACAAGTGGGTGATGCATGACAGATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAGCCAGCAAGCTTTCTATTCGGTGGGGTCAGAGGTGTATCCGTAACAAAGGTGCGCTGTAATCATTTTTTAGCAAGAAATCTCAAGAGTTTTCATGATTACCTTATCCTTGTTTATGCATGGAGAACCAACCCGAGTTTTCATGATCTGGCTG ATGGACTTTCTTGGGTTATGCAACTGGAAATCAAATGCGAAGATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATGGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAAAATCCGGAAGCCTTTCATTCCAAAGTCTTAGGCCACATTCATATCAGTTGGCAGAGATTGCAGCTCCTTTTTCTAGGAGGGGTATTGCTACGACAAGTTCAACCGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAATACATAATGCAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAGCCAGCAAGCTTTCTATTCGGTGGGGTCAGAGGTGTATCCGTAACAAAGGTGCGCTGTAATCATTTTTTAGCAAGAAATCTCAAGAGTTTTCATGATTACCTTATCCTTGTTTATGCATGGAGAACCAACCCGAGTTTTCATGATCTGGCTG ATGGACTTTCTTGGGTTATGCAACTGGAAATCAAATGCGAAGATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATGGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAAAATCCGGAAGCCTTTCATTCCAAAGTCTTAGGCCACATTCATATCAGTTGGCAGAGATTGCAGCTCCTTTTTCTAGGAGGGGTATTGCTACGACAAGTTCAACCGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAATACATAATGCAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAG MDFLGLCNWKSNAKMQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSGSLSFQSLRPHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH
BLAST of Carg23713 vs. NCBI nr
Match: XP_022970336.1 (50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_022970337.1 50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 382.5 bits (981), Expect = 1.1e-102 Identity = 212/264 (80.30%), Postives = 215/264 (81.44%), Query Frame = 0
BLAST of Carg23713 vs. NCBI nr
Match: KGN64844.1 (hypothetical protein Csa_1G126060 [Cucumis sativus]) HSP 1 Score: 363.2 bits (931), Expect = 6.9e-97 Identity = 208/284 (73.24%), Postives = 223/284 (78.52%), Query Frame = 0
BLAST of Carg23713 vs. NCBI nr
Match: XP_022955270.1 (54S ribosomal protein subunit img1, mitochondrial-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 350.9 bits (899), Expect = 3.5e-93 Identity = 199/270 (73.70%), Postives = 211/270 (78.15%), Query Frame = 0
BLAST of Carg23713 vs. NCBI nr
Match: XP_022955269.1 (54S ribosomal protein subunit img1, mitochondrial-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 350.5 bits (898), Expect = 4.6e-93 Identity = 199/271 (73.43%), Postives = 211/271 (77.86%), Query Frame = 0
BLAST of Carg23713 vs. NCBI nr
Match: XP_011654038.1 (PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus] >XP_011654046.1 PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 347.8 bits (891), Expect = 3.0e-92 Identity = 198/269 (73.61%), Postives = 212/269 (78.81%), Query Frame = 0
BLAST of Carg23713 vs. TAIR10
Match: AT5G11750.1 (Ribosomal protein L19 family protein) HSP 1 Score: 219.5 bits (558), Expect = 2.2e-57 Identity = 115/154 (74.68%), Postives = 135/154 (87.66%), Query Frame = 0
BLAST of Carg23713 vs. TAIR10
Match: AT4G11630.1 (Ribosomal protein L19 family protein) HSP 1 Score: 214.5 bits (545), Expect = 7.2e-56 Identity = 112/153 (73.20%), Postives = 135/153 (88.24%), Query Frame = 0
BLAST of Carg23713 vs. TAIR10
Match: AT1G24240.1 (Ribosomal protein L19 family protein) HSP 1 Score: 209.5 bits (532), Expect = 2.3e-54 Identity = 119/191 (62.30%), Postives = 145/191 (75.92%), Query Frame = 0
BLAST of Carg23713 vs. TAIR10
Match: AT4G17560.1 (Ribosomal protein L19 family protein) HSP 1 Score: 131.7 bits (330), Expect = 6.1e-31 Identity = 64/109 (58.72%), Postives = 92/109 (84.40%), Query Frame = 0
BLAST of Carg23713 vs. TAIR10
Match: AT5G47190.1 (Ribosomal protein L19 family protein) HSP 1 Score: 131.3 bits (329), Expect = 8.0e-31 Identity = 64/109 (58.72%), Postives = 91/109 (83.49%), Query Frame = 0
BLAST of Carg23713 vs. Swiss-Prot
Match: sp|Q8W463|RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g17560 PE=2 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29 Identity = 64/109 (58.72%), Postives = 92/109 (84.40%), Query Frame = 0
BLAST of Carg23713 vs. Swiss-Prot
Match: sp|Q8RXX5|RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g47190 PE=2 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.4e-29 Identity = 64/109 (58.72%), Postives = 91/109 (83.49%), Query Frame = 0
BLAST of Carg23713 vs. Swiss-Prot
Match: sp|P82413|RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 PE=1 SV=2) HSP 1 Score: 130.2 bits (326), Expect = 3.2e-29 Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 0
BLAST of Carg23713 vs. Swiss-Prot
Match: sp|A5G0G7|RL19_ACICJ (50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplS PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 8.7e-19 Identity = 49/106 (46.23%), Postives = 73/106 (68.87%), Query Frame = 0
BLAST of Carg23713 vs. Swiss-Prot
Match: sp|Q2G8H1|RL19_NOVAD (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplS PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 9.7e-18 Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0
BLAST of Carg23713 vs. TrEMBL
Match: tr|A0A0A0LV41|A0A0A0LV41_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=4 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 4.5e-97 Identity = 208/284 (73.24%), Postives = 223/284 (78.52%), Query Frame = 0
BLAST of Carg23713 vs. TrEMBL
Match: tr|A0A1S3CHF9|A0A1S3CHF9_CUCME (50S ribosomal protein L19-2, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=4 SV=1) HSP 1 Score: 345.1 bits (884), Expect = 1.3e-91 Identity = 196/269 (72.86%), Postives = 208/269 (77.32%), Query Frame = 0
BLAST of Carg23713 vs. TrEMBL
Match: tr|A0A1S3CHC3|A0A1S3CHC3_CUCME (50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=4 SV=1) HSP 1 Score: 344.7 bits (883), Expect = 1.7e-91 Identity = 196/270 (72.59%), Postives = 208/270 (77.04%), Query Frame = 0
BLAST of Carg23713 vs. TrEMBL
Match: tr|A0A1S3CHY3|A0A1S3CHY3_CUCME (50S ribosomal protein L19, chloroplastic-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=4 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 2.4e-90 Identity = 191/238 (80.25%), Postives = 201/238 (84.45%), Query Frame = 0
BLAST of Carg23713 vs. TrEMBL
Match: tr|A0A2P4JC30|A0A2P4JC30_QUESU (50s ribosomal protein l19, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_51513 PE=4 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 1.3e-59 Identity = 140/197 (71.07%), Postives = 152/197 (77.16%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|