CmoCh13G002540 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G002540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L19, putative
Location	Cmo_Chr13 : 2124761 .. 2126417 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTATTCGCATTTCTGAGTACTTTTGGAAAAGAAGTAATTTCATTTTATTGTCCAGTCTGTTTGATTTCGATATATTGTTTTCTTTTCCCCACAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGTAGAGTTCATTTCAGTCAAATACTATATCAGCAGTTGTAGATGAGGTTACTGAACAATTTTCTGGCTTTTGCTGTCTTGTGTGAACAGGAAGTACCTGAGAACAAGCGACGTGTCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGTCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTGATACAAATGTATTAGAACATGATGAACGCTGCGATCACACGTGTTGAAGTTGGTGTATTAATATGAACATACATGTGTTTATTCTTCTTGTGTATGTCTATTTCTGATAGCACTTTGCTTATGACTAAACAAGTGGGTGATGCATGACAGATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAGCCAGCAAGCTTTCTATTCGGTGGGGTCAGAGGTGTATCCGTAACAAAGGTGCGCTGTAATCATTTTTTAGCAAGAAATCTCAAGAGTTTTCATGATTACCTTATCCTTGTTTATGCATGGAGAACCAACCTGAGTTTTCATGATCCGGCTGAAATAAAAAAAAAAAA

mRNA sequence

ATGCAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAGCCAGCAAGCTTTCTATTCGGTGGGGTCAGAGGTGTATCCGTAACAAAGGTGCGCTGTAATCATTTTTTAGCAAGAAATCTCAAGAGTTTTCATGATTACCTTATCCTTGTTTATGCATGGAGAACCAACCTGAGTTTTCATGATCCGGCTGAAATAAAAAAAAAAAA

Coding sequence (CDS)

ATGCAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAG

Homology

[Close]

BLAST of CmoCh13G002540 vs. Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 64/140 (45.71%), Postives = 91/140 (65.00%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           M IL+++AI EV +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 115 MGILNQKAI-EVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 174

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R+                                RR++AG+G+E +FP+YSPNIKEI V+
Sbjct: 175 RI--------------------------------RRIIAGIGVEIVFPIYSPNIKEIKVV 221

Query: 121 DKKKVRRAKLYYLRDKMNAL 141
             +KVRRA+LYYLRDK+  L
Sbjct: 235 SHRKVRRARLYYLRDKLPRL 221

[Close]

BLAST of CmoCh13G002540 vs. Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-24
Identity = 63/140 (45.00%), Postives = 90/140 (64.29%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           M +L+K+AI EV +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 119 MGLLNKKAI-EVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 178

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R+                                RR++AG+G+E +FP+YSPNIKEI V+
Sbjct: 179 RI--------------------------------RRIIAGIGVEIVFPIYSPNIKEIKVV 225

Query: 121 DKKKVRRAKLYYLRDKMNAL 141
             +KVRRA+LYYLRDK+  L
Sbjct: 239 SHRKVRRARLYYLRDKLPRL 225

[Close]

BLAST of CmoCh13G002540 vs. Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 64/140 (45.71%), Postives = 89/140 (63.57%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           M IL+K+A+   ++  R +P I+ G IVQ+++EVPENKRR+S  KGIVI+R+NAG++TT 
Sbjct: 123 MGILNKKAVHAAEEL-RPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTI 182

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R+                                RR++AGVG+E +FPLYSPNIKEI V+
Sbjct: 183 RI--------------------------------RRIIAGVGVEIVFPLYSPNIKEIKVV 229

Query: 121 DKKKVRRAKLYYLRDKMNAL 141
             +KVR+A+LYYLRDK+  L
Sbjct: 243 SHRKVRKARLYYLRDKLPRL 229

[Close]

BLAST of CmoCh13G002540 vs. Swiss-Prot
Match: RL19_ACICJ (50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-13
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNTT 60
           +Q +D E IG++ +A R +PD KPG  +++ V V E +R R+   +G+ IAR N G+N+ 
Sbjct: 4   IQTIDAEQIGKLAEA-RAVPDFKPGDNLRVSVRVTEGERTRIQAFEGVCIARSNRGINSN 63

Query: 61  FRLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMV 120
           F                                 +R++  G G+E +FPLYSPN+ EI V
Sbjct: 64  F--------------------------------TVRKISYGEGVERVFPLYSPNVTEIAV 107

Query: 121 LDKKKVRRAKLYYLRDK 137
             +  VRRAKLYYLR +
Sbjct: 124 TRRGVVRRAKLYYLRGR 107

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BLAST of CmoCh13G002540 vs. Swiss-Prot
Match: RL19_THENN (50S ribosomal protein L19 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-13
Identity = 49/126 (38.89%), Postives = 69/126 (54.76%), Query Frame = 1


Query: 11  EVKKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNTTFRLRRLVAGV 70
           E K  ++EIPD +PG  V++ V+V E  R R    +GIVIA+R +G+N TF +RR+ +  
Sbjct: 11  EKKYEKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINRTFTVRRIGSH- 70

Query: 71  GIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAK 130
                                         GVG+E +FP +SP +++I V+ K KVRRAK
Sbjct: 71  ------------------------------GVGVERIFPFHSPVVEKIEVVRKGKVRRAK 105

Query: 131 LYYLRD 136
           LYYLRD
Sbjct: 131 LYYLRD 105

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BLAST of CmoCh13G002540 vs. TrEMBL
Match: A0A067KFH7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11396 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.5e-41
Identity = 100/143 (69.93%), Postives = 107/143 (74.83%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA+ EV+ A+REIPDIKPGYIVQLKVEVPENKRRVS +KGIVIARRNAGLNTTF
Sbjct: 151 MQILDKEAVQEVR-AEREIPDIKPGYIVQLKVEVPENKRRVSIVKGIVIARRNAGLNTTF 210

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                LRR+VAGVG+ESL+PLYSPNIKEI VL
Sbjct: 211 R--------------------------------LRRIVAGVGVESLYPLYSPNIKEIKVL 260

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALKKH
Sbjct: 271 DKKKVRRAKLYYLRDKMNALKKH 260

[Close]

BLAST of CmoCh13G002540 vs. TrEMBL
Match: B9S1T8_RICCO (50S ribosomal protein L19, putative OS=Ricinus communis GN=RCOM_0868180 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-40
Identity = 101/142 (71.13%), Postives = 105/142 (73.94%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA+ EVK  QREIPDI+PGYIVQLKVEVPENKRRVS +KGIVIARRNAGLNTTF
Sbjct: 139 MQILDKEAVQEVK-TQREIPDIRPGYIVQLKVEVPENKRRVSIVKGIVIARRNAGLNTTF 198

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           RL                                RRLVAGVG+ESLFPLYSPNIKEI VL
Sbjct: 199 RL--------------------------------RRLVAGVGVESLFPLYSPNIKEIKVL 247

Query: 121 DKKKVRRAKLYYLRDKMNALKK 143
           DKKKVRRAKLYYLRDKMNALKK
Sbjct: 259 DKKKVRRAKLYYLRDKMNALKK 247

[Close]

BLAST of CmoCh13G002540 vs. TrEMBL
Match: A0A0A0LV41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126060 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-40
Identity = 100/142 (70.42%), Postives = 107/142 (75.35%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA+ EVK A+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TF
Sbjct: 297 MQILDKEAVEEVK-ARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTF 356

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R+                                RR+VAGVGIESLFPLYSPNIKEI VL
Sbjct: 357 RI--------------------------------RRVVAGVGIESLFPLYSPNIKEIKVL 405

Query: 121 DKKKVRRAKLYYLRDKMNALKK 143
           +KKKVRRAKLYYLRDKMNALKK
Sbjct: 417 EKKKVRRAKLYYLRDKMNALKK 405

[Close]

BLAST of CmoCh13G002540 vs. TrEMBL
Match: B9RAT4_RICCO (50S ribosomal protein L19, putative OS=Ricinus communis GN=RCOM_1508470 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.7e-40
Identity = 99/142 (69.72%), Postives = 106/142 (74.65%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKE++ EVK AQ+E+PDI+PGYIVQLKVEVPENKRRVS +KGIVIARRNAGLNTTF
Sbjct: 81  MQILDKESVQEVK-AQKEMPDIRPGYIVQLKVEVPENKRRVSIVKGIVIARRNAGLNTTF 140

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           RL                                RRLVAGVG+ESLFPLYSPNIKEI VL
Sbjct: 141 RL--------------------------------RRLVAGVGVESLFPLYSPNIKEIRVL 189

Query: 121 DKKKVRRAKLYYLRDKMNALKK 143
           DKKKVRRAKLYYLRDKMNALKK
Sbjct: 201 DKKKVRRAKLYYLRDKMNALKK 189

[Close]

BLAST of CmoCh13G002540 vs. TrEMBL
Match: A1X876_SOLLC (Putative L19 ribosomal protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-39
Identity = 97/143 (67.83%), Postives = 106/143 (74.13%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA+ EV+ AQ EIPDIKPGYI+QLK+EVPENKRRVST+KGIVIARRNAGLNTTF
Sbjct: 141 MQILDKEAVEEVR-AQNEIPDIKPGYIIQLKLEVPENKRRVSTIKGIVIARRNAGLNTTF 200

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           RL                                RRLVAGVG+E+LF LYSPN+KEI VL
Sbjct: 201 RL--------------------------------RRLVAGVGVENLFHLYSPNLKEIKVL 250

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKK+VRRAKLYYLRDKMNALKKH
Sbjct: 261 DKKRVRRAKLYYLRDKMNALKKH 250

[Close]

BLAST of CmoCh13G002540 vs. TAIR10
Match: AT4G11630.1 (AT4G11630.1 Ribosomal protein L19 family protein)

HSP 1 Score: 163.7 bits (413), Expect = 8.4e-41
Identity = 91/143 (63.64%), Postives = 105/143 (73.43%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQI+DKEA+ EV+   REIP+IKPGYIVQLKVEVPENKRRVS +KG+VIARRNAGLN+TF
Sbjct: 116 MQIVDKEAVEEVRSL-REIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 175

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R+                                RRLVAGVG+ES+FPLYSPN++EI V+
Sbjct: 176 RI--------------------------------RRLVAGVGVESMFPLYSPNLREIKVV 225

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDK+NALKKH
Sbjct: 236 DKKKVRRAKLYYLRDKVNALKKH 225

[Close]

BLAST of CmoCh13G002540 vs. TAIR10
Match: AT5G11750.1 (AT5G11750.1 Ribosomal protein L19 family protein)

HSP 1 Score: 163.7 bits (413), Expect = 8.4e-41
Identity = 91/143 (63.64%), Postives = 105/143 (73.43%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQI+DKEA+ EV+   REIP+IKPGYIVQLKVEVPENKRRVS +KG+VIARRNAGLN+TF
Sbjct: 120 MQIVDKEAVEEVRNL-REIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 179

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R+                                RRLVAGVG+ES+FPLYSPN++EI V+
Sbjct: 180 RI--------------------------------RRLVAGVGVESMFPLYSPNLREIKVV 229

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDK+NALKKH
Sbjct: 240 DKKKVRRAKLYYLRDKVNALKKH 229

[Close]

BLAST of CmoCh13G002540 vs. TAIR10
Match: AT1G24240.1 (AT1G24240.1 Ribosomal protein L19 family protein)

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-39
Identity = 89/143 (62.24%), Postives = 104/143 (72.73%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQI+DKEA+ EV+   REIP+IKPGYIVQLKVEVPENKRRVS +KG+VIARRNAGLN+TF
Sbjct: 113 MQIVDKEAVEEVRTL-REIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 172

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R+                                RRLVAGVG+ES+FPLYSPN++ I V+
Sbjct: 173 RI--------------------------------RRLVAGVGVESMFPLYSPNLRVIKVV 222

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLR+K+NALKKH
Sbjct: 233 DKKKVRRAKLYYLREKVNALKKH 222

[Close]

BLAST of CmoCh13G002540 vs. TAIR10
Match: AT4G17560.1 (AT4G17560.1 Ribosomal protein L19 family protein)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-25
Identity = 64/140 (45.71%), Postives = 91/140 (65.00%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           M IL+++AI EV +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 115 MGILNQKAI-EVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 174

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R+                                RR++AG+G+E +FP+YSPNIKEI V+
Sbjct: 175 RI--------------------------------RRIIAGIGVEIVFPIYSPNIKEIKVV 221

Query: 121 DKKKVRRAKLYYLRDKMNAL 141
             +KVRRA+LYYLRDK+  L
Sbjct: 235 SHRKVRRARLYYLRDKLPRL 221

[Close]

BLAST of CmoCh13G002540 vs. TAIR10
Match: AT5G47190.1 (AT5G47190.1 Ribosomal protein L19 family protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 63/140 (45.00%), Postives = 90/140 (64.29%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           M +L+K+AI EV +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 119 MGLLNKKAI-EVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 178

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R+                                RR++AG+G+E +FP+YSPNIKEI V+
Sbjct: 179 RI--------------------------------RRIIAGIGVEIVFPIYSPNIKEIKVV 225

Query: 121 DKKKVRRAKLYYLRDKMNAL 141
             +KVRRA+LYYLRDK+  L
Sbjct: 239 SHRKVRRARLYYLRDKLPRL 225

[Close]

BLAST of CmoCh13G002540 vs. NCBI nr
Match: gi|1009105855|ref|XP_015894943.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 179.9 bits (455), Expect = 3.2e-42
Identity = 103/143 (72.03%), Postives = 107/143 (74.83%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA+GEVK A REIPDIKPGYIVQLKVEVP+NKRRVS LKGIVIARRNAGLNTTF
Sbjct: 143 MQILDKEAVGEVK-AHREIPDIKPGYIVQLKVEVPDNKRRVSILKGIVIARRNAGLNTTF 202

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RRLVAGVG+ESLFPLYSPNIKEI VL
Sbjct: 203 R--------------------------------IRRLVAGVGVESLFPLYSPNIKEIKVL 252

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALKKH
Sbjct: 263 DKKKVRRAKLYYLRDKMNALKKH 252

[Close]

BLAST of CmoCh13G002540 vs. NCBI nr
Match: gi|729406605|ref|XP_010555505.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic-like isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 176.0 bits (445), Expect = 4.6e-41
Identity = 99/143 (69.23%), Postives = 107/143 (74.83%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA+GEV+ AQREIPDIKPGYIVQLKVEVPENKRR S +KGIVIARRNAGLN+TF
Sbjct: 110 MQILDKEAVGEVR-AQREIPDIKPGYIVQLKVEVPENKRRASIVKGIVIARRNAGLNSTF 169

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RRLVAGVG+ES+FPLYSPN+KEI VL
Sbjct: 170 R--------------------------------IRRLVAGVGVESMFPLYSPNLKEIKVL 219

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALKKH
Sbjct: 230 DKKKVRRAKLYYLRDKMNALKKH 219

[Close]

BLAST of CmoCh13G002540 vs. NCBI nr
Match: gi|729406602|ref|XP_010555504.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic-like isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 176.0 bits (445), Expect = 4.6e-41
Identity = 99/143 (69.23%), Postives = 107/143 (74.83%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA+GEV+ AQREIPDIKPGYIVQLKVEVPENKRR S +KGIVIARRNAGLN+TF
Sbjct: 112 MQILDKEAVGEVR-AQREIPDIKPGYIVQLKVEVPENKRRASIVKGIVIARRNAGLNSTF 171

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RRLVAGVG+ES+FPLYSPN+KEI VL
Sbjct: 172 R--------------------------------IRRLVAGVGVESMFPLYSPNLKEIKVL 221

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALKKH
Sbjct: 232 DKKKVRRAKLYYLRDKMNALKKH 221

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BLAST of CmoCh13G002540 vs. NCBI nr
Match: gi|802650124|ref|XP_012079968.1| (PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas])

HSP 1 Score: 175.3 bits (443), Expect = 7.9e-41
Identity = 100/143 (69.93%), Postives = 107/143 (74.83%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA+ EV+ A+REIPDIKPGYIVQLKVEVPENKRRVS +KGIVIARRNAGLNTTF
Sbjct: 151 MQILDKEAVQEVR-AEREIPDIKPGYIVQLKVEVPENKRRVSIVKGIVIARRNAGLNTTF 210

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                LRR+VAGVG+ESL+PLYSPNIKEI VL
Sbjct: 211 R--------------------------------LRRIVAGVGVESLYPLYSPNIKEIKVL 260

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALKKH
Sbjct: 271 DKKKVRRAKLYYLRDKMNALKKH 260

[Close]

BLAST of CmoCh13G002540 vs. NCBI nr
Match: gi|720015258|ref|XP_010260779.1| (PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 174.9 bits (442), Expect = 1.0e-40
Identity = 100/142 (70.42%), Postives = 106/142 (74.65%), Query Frame = 1


Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA+ EV+ AQREIPD+KPGYIVQLKVEVPENKRRVS LKGIVIARRNAGLNTTF
Sbjct: 36  MQILDKEAVEEVR-AQREIPDVKPGYIVQLKVEVPENKRRVSILKGIVIARRNAGLNTTF 95

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           RL                                RRLVAGVG+ES+FPLYSPNIKE+ VL
Sbjct: 96  RL--------------------------------RRLVAGVGVESVFPLYSPNIKEVKVL 144

Query: 121 DKKKVRRAKLYYLRDKMNALKK 143
           DKKKVRRAKLYYLRDKMNALKK
Sbjct: 156 DKKKVRRAKLYYLRDKMNALKK 144

The following BLAST results are available for this feature:

BLAST of CmoCh13G002540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK191_ARATH	1.8e-24	45.71	50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 ...	[more]
RK192_ARATH	3.0e-24	45.00	50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 ...	[more]
RK19_SPIOL	3.9e-24	45.71	50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2	[more]
RL19_ACICJ	1.8e-13	35.77	50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) GN=rplS PE=3 SV=...	[more]
RL19_THENN	1.8e-13	38.89	50S ribosomal protein L19 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 435...	[more]

BLAST of CmoCh13G002540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067KFH7_JATCU	5.5e-41	69.93	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11396 PE=4 SV=1	[more]
B9S1T8_RICCO	1.2e-40	71.13	50S ribosomal protein L19, putative OS=Ricinus communis GN=RCOM_0868180 PE=4 SV=...	[more]
A0A0A0LV41_CUCSA	1.6e-40	70.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126060 PE=4 SV=1	[more]
B9RAT4_RICCO	4.7e-40	69.72	50S ribosomal protein L19, putative OS=Ricinus communis GN=RCOM_1508470 PE=4 SV=...	[more]
A1X876_SOLLC	1.0e-39	67.83	Putative L19 ribosomal protein OS=Solanum lycopersicum PE=2 SV=1	[more]

BLAST of CmoCh13G002540 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G11630.1	8.4e-41	63.64	Ribosomal protein L19 family protein	[more]
AT5G11750.1	8.4e-41	63.64	Ribosomal protein L19 family protein	[more]
AT1G24240.1	2.1e-39	62.24	Ribosomal protein L19 family protein	[more]
AT4G17560.1	1.0e-25	45.71	Ribosomal protein L19 family protein	[more]
AT5G47190.1	1.7e-25	45.00	Ribosomal protein L19 family protein	[more]

BLAST of CmoCh13G002540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009105855\|ref\|XP_015894943.1\|	3.2e-42	72.03	PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|729406605\|ref\|XP_010555505.1\|	4.6e-41	69.23	PREDICTED: 50S ribosomal protein L19, chloroplastic-like isoform X2 [Tarenaya ha...	[more]
gi\|729406602\|ref\|XP_010555504.1\|	4.6e-41	69.23	PREDICTED: 50S ribosomal protein L19, chloroplastic-like isoform X1 [Tarenaya ha...	[more]
gi\|802650124\|ref\|XP_012079968.1\|	7.9e-41	69.93	PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]	[more]
gi\|720015258\|ref\|XP_010260779.1\|	1.0e-40	70.42	PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001857	Ribosomal_L19
IPR008991	Translation_prot_SH3-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G002540.1	CmoCh13G002540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 100..138 score: 3.0E-52coord: 1..67 score: 3.0
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 86..138 score: 2.8E-15coord: 11..85 score: 2.9
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 93..138 score: 2.81E-15coord: 15..85 score: 1.35
None	No IPR available	PANTHER	PTHR15680:SF9	39S RIBOSOMAL PROTEIN L19, MITOCHONDRIAL	coord: 100..138 score: 3.0E-52coord: 1..67 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G002540	CmaCh13G002520	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G002540	Cla003417	Watermelon (97103) v1	cmowmB191
CmoCh13G002540	Csa1G126060	Cucumber (Chinese Long) v2	cmocuB188
CmoCh13G002540	MELO3C004891	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G002540	ClCG01G013640	Watermelon (Charleston Gray)	cmowcgB172
CmoCh13G002540	CSPI01G13820	Wild cucumber (PI 183967)	cmocpiB192
CmoCh13G002540	Lsi03G000440	Bottle gourd (USVL1VR-Ls)	cmolsiB203
CmoCh13G002540	Cp4.1LG20g07290	Cucurbita pepo (Zucchini)	cmocpeB203
CmoCh13G002540	MELO3C004891.2	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G002540	CsaV3_1G014020	Cucumber (Chinese Long) v3	cmocucB0221
CmoCh13G002540	Cla97C01G012660	Watermelon (97103) v2	cmowmbB193
CmoCh13G002540	Bhi08G000157	Wax gourd	cmowgoB0259
CmoCh13G002540	CsGy1G013840	Cucumber (Gy14) v2	cgybcmoB057
CmoCh13G002540	Carg23713	Silver-seed gourd	carcmoB0234

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G002540	Watermelon (97103) v2	cmowmbB208
CmoCh13G002540	Cucurbita moschata (Rifu)	cmocmoB135
CmoCh13G002540	Cucurbita moschata (Rifu)	cmocmoB179
CmoCh13G002540	Cucurbita maxima (Rimu)	cmacmoB179
CmoCh13G002540	Cucurbita pepo (Zucchini)	cmocpeB192
CmoCh13G002540	Cucurbita pepo (Zucchini)	cmocpeB216
CmoCh13G002540	Bottle gourd (USVL1VR-Ls)	cmolsiB185
CmoCh13G002540	Melon (DHL92) v3.6.1	cmomedB200
CmoCh13G002540	Silver-seed gourd	carcmoB0458
CmoCh13G002540	Cucumber (Chinese Long) v3	cmocucB0257