Carg23713 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23713
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L19, putative
Location	Cucurbita_argyrosperma_scaffold_142 : 338229 .. 340249 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTTCTTGGGTTATGCAACTGGAAATCAAATGCGAAGATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATGGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAAAATCCGGAAGCCTTTGTATGTATTTCTGTTTGTTTAATATTTTGTGCATTATGTAGTATGATATGTTCTTGTTGTTTTCAAAGGTTCTATAGCTATTCAGTAAATCTACTTTGGTTTTATACATATATAATTTGCGACATTTAATCTAGTTCGAATTCCAAGCTTTTACGAATTCATTTATGCTTCTTGTTTGAGTTCATAAGCAATGAGGCACAAGTAAATCTCATGATATCGGTCTTGGCCGACACCTGATTGACGGTAGGGGAGCGGGTAATATGTATAGTAACTTATCAATTGTGTACATTATGTATGTGTCTCCGACCAGACGGGATTGGTGCTAAATGTCTTATTGATATAAAGTGACGTAGAGATGAGTACATTTGCTGGAACTGGCTTCTGAGTTCAGTTATGGCTTAATCAACAGAACTATGAACTTCACTGTTGTCTCGAACACGTAGTTATTATGTATCCTATTTTCCTTCACAACAAATTAGTCCGAAAAATAATTAGCTCAAGTCGAGCTGATGTCCCTTTTCAAGGGAAAAAAGAAAAAAGTGGTTATAGCTCTTTGCTTCTATGATCCTTGCCAATTGAAGAGCCTTTCATTAATTTCCTTGTTCTGTTGGTTTGTGGGTACTCATTGGAAGCAATATCTTTTTATTCAAGAGTTTGTTTTGGAATATATCACTTTGTAACAATTTATCAACTATGTAGCAGAGAAGTATGGGCTCTCAAATGGAATTTGTGCCTTCGAGCAACCATATATCTTCATCTTGTTCAGCATTCCAAAGTCTTAGGCCACATTCATATCAGTTGGCAGAGATTGCAGCTCCTTTTTCTAGGAGGGGTATTGCTACGACAAGTTCAACCGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAATACATAATGCAGGTATTCGCATTTCTGAGTACTTTTGGAAAAGAAGTAATTTGATTTTATCGTCCAGTCTGTTTGATTTCGATATATTGTTTTCTTTTCCCCACAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGTAGAGTTCATTTCAGTCAAATACTATATCAGCAGTTGTAGATGAGGTTACTGAACAATTTTCTGGCTTTTGCTGTCTTGTGTGAACAGGAAGTACCTGAGAACAAGCGACGTGTCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTGATACAAATGTATTAGAACATGATGAACGCTGCGATCACACGTGTTGAAGTTGGTGTATTAATATGAACATACATGTGTTTATTCTTCTTGTGTATGTCTATTTCTGATAGCACTTTGCTTATGACTAAACAAGTGGGTGATGCATGACAGATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAGCCAGCAAGCTTTCTATTCGGTGGGGTCAGAGGTGTATCCGTAACAAAGGTGCGCTGTAATCATTTTTTAGCAAGAAATCTCAAGAGTTTTCATGATTACCTTATCCTTGTTTATGCATGGAGAACCAACCCGAGTTTTCATGATCTGGCTG

mRNA sequence

ATGGACTTTCTTGGGTTATGCAACTGGAAATCAAATGCGAAGATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATGGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAAAATCCGGAAGCCTTTCATTCCAAAGTCTTAGGCCACATTCATATCAGTTGGCAGAGATTGCAGCTCCTTTTTCTAGGAGGGGTATTGCTACGACAAGTTCAACCGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAATACATAATGCAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAGCCAGCAAGCTTTCTATTCGGTGGGGTCAGAGGTGTATCCGTAACAAAGGTGCGCTGTAATCATTTTTTAGCAAGAAATCTCAAGAGTTTTCATGATTACCTTATCCTTGTTTATGCATGGAGAACCAACCCGAGTTTTCATGATCTGGCTG

Coding sequence (CDS)

ATGGACTTTCTTGGGTTATGCAACTGGAAATCAAATGCGAAGATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATGGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAAAATCCGGAAGCCTTTCATTCCAAAGTCTTAGGCCACATTCATATCAGTTGGCAGAGATTGCAGCTCCTTTTTCTAGGAGGGGTATTGCTACGACAAGTTCAACCGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAATACATAATGCAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAG

Protein sequence

MDFLGLCNWKSNAKMQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSGSLSFQSLRPHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH

Homology

[Close]

BLAST of Carg23713 vs. NCBI nr
Match: XP_022970336.1 (50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_022970337.1 50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 382.5 bits (981), Expect = 1.1e-102
Identity = 212/264 (80.30%), Postives = 215/264 (81.44%), Query Frame = 0


Query: 15  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSG----- 74
           MQGFRRINQLVRRQSPD HFKLIRGYPLNGDAGCSCSAP SMECSFGNPY SLSG     
Sbjct: 1   MQGFRRINQLVRRQSPDVHFKLIRGYPLNGDAGCSCSAPMSMECSFGNPYGSLSGSLLRS 60

Query: 75  --------------------------QSKSGSLSFQSLRPHSYQLAEIAAPFSRRGIATT 134
                                        S   +FQSLRPHSYQLAEIAAPFS RGIA T
Sbjct: 61  FSRLGNQYPEAFRSMGSQMEFVPSGNHISSSCSAFQSLRPHSYQLAEIAAPFSSRGIAMT 120

Query: 135 SSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPDIKPGYI 194
           SSTES+PQGSP VDSDIT RIKFK LDKTSK+IMQILDKEA GEV KAQREIPDIK GYI
Sbjct: 121 SSTESSPQGSPTVDSDIT-RIKFKWLDKTSKHIMQILDKEAFGEV-KAQREIPDIKSGYI 180

Query: 195 VQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMV 248
           VQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEI V
Sbjct: 181 VQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIKV 240

[Close]

BLAST of Carg23713 vs. NCBI nr
Match: KGN64844.1 (hypothetical protein Csa_1G126060 [Cucumis sativus])

HSP 1 Score: 363.2 bits (931), Expect = 6.9e-97
Identity = 208/284 (73.24%), Postives = 223/284 (78.52%), Query Frame = 0


Query: 2   DFLGLC--NWKSNAKMQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECS 61
           DFL LC   WKS+AKMQGFRRINQLVRRQ PDA+FKLIRGYPLNGDAGCSCSAP SME S
Sbjct: 123 DFLLLCCHCWKSSAKMQGFRRINQLVRRQIPDANFKLIRGYPLNGDAGCSCSAPMSMENS 182

Query: 62  ------FGNPYASLSGQ-----SKSGS--------------------------LSFQSLR 121
                 FG  Y SL G      S+SG+                           +FQS R
Sbjct: 183 FTIPYLFGKSYGSLCGSFLRSFSRSGNQYPEAFKNMSSQMEFVPLRKHASSTFSAFQSSR 242

Query: 122 PHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDK 181
           PH +QLAE AAPFS RGIATTSS ESA QGSPAVDS I PRIKFKRLDKTS++IMQILDK
Sbjct: 243 PHFFQLAETAAPFSSRGIATTSSMESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDK 302

Query: 182 EAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLV 241
           EA+ EV KA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+V
Sbjct: 303 EAVEEV-KARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVV 362

Query: 242 AGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKK 247
           AGVGIESLFPLYSPNIKEI VL+KKKVRRAKLYYLRDKMNALKK
Sbjct: 363 AGVGIESLFPLYSPNIKEIKVLEKKKVRRAKLYYLRDKMNALKK 405

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BLAST of Carg23713 vs. NCBI nr
Match: XP_022955270.1 (54S ribosomal protein subunit img1, mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 350.9 bits (899), Expect = 3.5e-93
Identity = 199/270 (73.70%), Postives = 211/270 (78.15%), Query Frame = 0


Query: 15  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECS------FGNPYASLS 74
           MQ FRRINQLVRRQSPDAHFK IRGYPLNGDA C CSA  SME S      FGNPY SL+
Sbjct: 1   MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 60

Query: 75  GQ-----SKSGSL--------------------------SFQSLRPHSYQLAEIAAPFSR 134
           G      SK G+                           +FQS + H +QLAEIAAPFS 
Sbjct: 61  GSLFRSFSKLGNQYPEAFKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFSS 120

Query: 135 RGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPD 194
           RGIATTSS ESAPQGS  +D+DITPRIKFKRLDKTSK+IMQILDKEA+ EV KA+REIPD
Sbjct: 121 RGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEV-KAKREIPD 180

Query: 195 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPN 248
           IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAGVGIESLFPLYSPN
Sbjct: 181 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIESLFPLYSPN 240

[Close]

BLAST of Carg23713 vs. NCBI nr
Match: XP_022955269.1 (54S ribosomal protein subunit img1, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 350.5 bits (898), Expect = 4.6e-93
Identity = 199/271 (73.43%), Postives = 211/271 (77.86%), Query Frame = 0


Query: 15  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECS------FGNPYASLS 74
           MQ FRRINQLVRRQSPDAHFK IRGYPLNGDA C CSA  SME S      FGNPY SL+
Sbjct: 1   MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 60

Query: 75  GQ-----SKSGSL---------------------------SFQSLRPHSYQLAEIAAPFS 134
           G      SK G+                            +FQS + H +QLAEIAAPFS
Sbjct: 61  GSLFRSFSKLGNQYPEAFQKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFS 120

Query: 135 RRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIP 194
            RGIATTSS ESAPQGS  +D+DITPRIKFKRLDKTSK+IMQILDKEA+ EV KA+REIP
Sbjct: 121 SRGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEV-KAKREIP 180

Query: 195 DIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSP 248
           DIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAGVGIESLFPLYSP
Sbjct: 181 DIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIESLFPLYSP 240

[Close]

BLAST of Carg23713 vs. NCBI nr
Match: XP_011654038.1 (PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus] >XP_011654046.1 PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 347.8 bits (891), Expect = 3.0e-92
Identity = 198/269 (73.61%), Postives = 212/269 (78.81%), Query Frame = 0


Query: 15  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECS------FGNPYASLS 74
           MQGFRRINQLVRRQ PDA+FKLIRGYPLNGDAGCSCSAP SME S      FG  Y SL 
Sbjct: 1   MQGFRRINQLVRRQIPDANFKLIRGYPLNGDAGCSCSAPMSMENSFTIPYLFGKSYGSLC 60

Query: 75  GQ-----SKSGS--------------------------LSFQSLRPHSYQLAEIAAPFSR 134
           G      S+SG+                           +FQS RPH +QLAE AAPFS 
Sbjct: 61  GSFLRSFSRSGNQYPEAFKNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSS 120

Query: 135 RGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPD 194
           RGIATTSS ESA QGSPAVDS I PRIKFKRLDKTS++IMQILDKEA+ EV KA+REIPD
Sbjct: 121 RGIATTSSMESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEV-KARREIPD 180

Query: 195 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPN 247
           IKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVGIESLFPLYSPN
Sbjct: 181 IKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPLYSPN 240

[Close]

BLAST of Carg23713 vs. TAIR10
Match: AT5G11750.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 219.5 bits (558), Expect = 2.2e-57
Identity = 115/154 (74.68%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 95  FSRRGIATT-SSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQR 154
           +S R  +TT  S +S PQGSP  D  +  RIKFKRLDKT+K+IMQI+DKEA+ EV+   R
Sbjct: 77  YSLRCFSTTGDSVQSTPQGSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEVRNL-R 136

Query: 155 EIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 214
           EIP+IKPGYIVQLKVEVPENKRRVS +KG+VIARRNAGLN+TFR+RRLVAGVG+ES+FPL
Sbjct: 137 EIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPL 196

Query: 215 YSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH 248
           YSPN++EI V+DKKKVRRAKLYYLRDK+NALKKH
Sbjct: 197 YSPNLREIKVVDKKKVRRAKLYYLRDKVNALKKH 229

[Close]

BLAST of Carg23713 vs. TAIR10
Match: AT4G11630.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 214.5 bits (545), Expect = 7.2e-56
Identity = 112/153 (73.20%), Postives = 135/153 (88.24%), Query Frame = 0


Query: 95  FSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQRE 154
           ++ R  +TT   +S+ QGSP  D  +  RIKFKRLDKT+K+IMQI+DKEA+ EV ++ RE
Sbjct: 76  YASRCFSTTG--DSSVQGSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEV-RSLRE 135

Query: 155 IPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLY 214
           IP+IKPGYIVQLKVEVPENKRRVS +KG+VIARRNAGLN+TFR+RRLVAGVG+ES+FPLY
Sbjct: 136 IPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLY 195

Query: 215 SPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH 248
           SPN++EI V+DKKKVRRAKLYYLRDK+NALKKH
Sbjct: 196 SPNLREIKVVDKKKVRRAKLYYLRDKVNALKKH 225

[Close]

BLAST of Carg23713 vs. TAIR10
Match: AT1G24240.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-54
Identity = 119/191 (62.30%), Postives = 145/191 (75.92%), Query Frame = 0


Query: 66  SLSGQSKSGSLSFQSLRPHSYQLAEIA-APFSRRGIATT--------SSTESAPQGSPAV 125
           S +   K G  SF S R  +Y ++ +  A FS   +           S+T  + QGSP  
Sbjct: 33  SANESRKLGFDSFPSTRAATYLISSLKNAGFSSLAVVPKQNFSSRCFSTTGDSVQGSPES 92

Query: 126 DSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRR 185
           D  +  RIKFKRLDKT+K+IMQI+DKEA+ EV +  REIP+IKPGYIVQLKVEVPENKRR
Sbjct: 93  DCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEV-RTLREIPEIKPGYIVQLKVEVPENKRR 152

Query: 186 VSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYY 245
           VS +KG+VIARRNAGLN+TFR+RRLVAGVG+ES+FPLYSPN++ I V+DKKKVRRAKLYY
Sbjct: 153 VSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLRVIKVVDKKKVRRAKLYY 212

Query: 246 LRDKMNALKKH 248
           LR+K+NALKKH
Sbjct: 213 LREKVNALKKH 222

[Close]

BLAST of Carg23713 vs. TAIR10
Match: AT4G17560.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 131.7 bits (330), Expect = 6.1e-31
Identity = 64/109 (58.72%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 136 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTT 195
           +M IL+++AI EV +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT
Sbjct: 114 VMGILNQKAI-EVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTT 173

Query: 196 FRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNAL 245
            R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+LYYLRDK+  L
Sbjct: 174 IRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 221

[Close]

BLAST of Carg23713 vs. TAIR10
Match: AT5G47190.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 131.3 bits (329), Expect = 8.0e-31
Identity = 64/109 (58.72%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 136 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTT 195
           IM +L+K+AI EV +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT
Sbjct: 118 IMGLLNKKAI-EVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTT 177

Query: 196 FRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNAL 245
            R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+LYYLRDK+  L
Sbjct: 178 IRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 225

[Close]

BLAST of Carg23713 vs. Swiss-Prot
Match: sp|Q8W463|RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 64/109 (58.72%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 136 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTT 195
           +M IL+++AI EV +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT
Sbjct: 114 VMGILNQKAI-EVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTT 173

Query: 196 FRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNAL 245
            R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+LYYLRDK+  L
Sbjct: 174 IRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 221

[Close]

BLAST of Carg23713 vs. Swiss-Prot
Match: sp|Q8RXX5|RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-29
Identity = 64/109 (58.72%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 136 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTT 195
           IM +L+K+AI EV +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT
Sbjct: 118 IMGLLNKKAI-EVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTT 177

Query: 196 FRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNAL 245
            R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+LYYLRDK+  L
Sbjct: 178 IRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 225

[Close]

BLAST of Carg23713 vs. Swiss-Prot
Match: sp|P82413|RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 PE=1 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 3.2e-29
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 107 ESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPDIKPGYIVQL 166
           E  P  S A   +  PR +  +L      IM IL+K+A+   ++  R +P I+ G IVQ+
Sbjct: 97  EELPVESEAEAEERPPRQQRVKLGD----IMGILNKKAVHAAEEL-RPVPGIRTGDIVQI 156

Query: 167 KVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMVLDK 226
           ++EVPENKRR+S  KGIVI+R+NAG++TT R+RR++AGVG+E +FPLYSPNIKEI V+  
Sbjct: 157 RLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSH 216

Query: 227 KKVRRAKLYYLRDKMNAL 245
           +KVR+A+LYYLRDK+  L
Sbjct: 217 RKVRKARLYYLRDKLPRL 229

[Close]

BLAST of Carg23713 vs. Swiss-Prot
Match: sp|A5G0G7|RL19_ACICJ (50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplS PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.7e-19
Identity = 49/106 (46.23%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 136 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNT 195
           ++Q +D E IG++ +A R +PD KPG  +++ V V E +R R+   +G+ IAR N G+N+
Sbjct: 3   VIQTIDAEQIGKLAEA-RAVPDFKPGDNLRVSVRVTEGERTRIQAFEGVCIARSNRGINS 62

Query: 196 TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDK 241
            F +R++  G G+E +FPLYSPN+ EI V  +  VRRAKLYYLR +
Sbjct: 63  NFTVRKISYGEGVERVFPLYSPNVTEIAVTRRGVVRRAKLYYLRGR 107

[Close]

BLAST of Carg23713 vs. Swiss-Prot
Match: sp|Q2G8H1|RL19_NOVAD (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplS PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.7e-18
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 136 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNT 195
           ++Q L+ EAI E  KA++EIPD + G  V++ V V E +R RV   +G+ IAR N GL +
Sbjct: 3   LIQQLEAEAIAEF-KAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGS 62

Query: 196 TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDK 241
            F +R++  G G+E +FPLYSPNI  I V+ +  VRRAKLYYLR +
Sbjct: 63  NFTVRKISFGEGVERVFPLYSPNIDSITVVRRGVVRRAKLYYLRGR 107

[Close]

BLAST of Carg23713 vs. TrEMBL
Match: tr|A0A0A0LV41|A0A0A0LV41_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 4.5e-97
Identity = 208/284 (73.24%), Postives = 223/284 (78.52%), Query Frame = 0


Query: 2   DFLGLC--NWKSNAKMQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECS 61
           DFL LC   WKS+AKMQGFRRINQLVRRQ PDA+FKLIRGYPLNGDAGCSCSAP SME S
Sbjct: 123 DFLLLCCHCWKSSAKMQGFRRINQLVRRQIPDANFKLIRGYPLNGDAGCSCSAPMSMENS 182

Query: 62  ------FGNPYASLSGQ-----SKSGS--------------------------LSFQSLR 121
                 FG  Y SL G      S+SG+                           +FQS R
Sbjct: 183 FTIPYLFGKSYGSLCGSFLRSFSRSGNQYPEAFKNMSSQMEFVPLRKHASSTFSAFQSSR 242

Query: 122 PHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDK 181
           PH +QLAE AAPFS RGIATTSS ESA QGSPAVDS I PRIKFKRLDKTS++IMQILDK
Sbjct: 243 PHFFQLAETAAPFSSRGIATTSSMESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDK 302

Query: 182 EAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLV 241
           EA+ EV KA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+V
Sbjct: 303 EAVEEV-KARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVV 362

Query: 242 AGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKK 247
           AGVGIESLFPLYSPNIKEI VL+KKKVRRAKLYYLRDKMNALKK
Sbjct: 363 AGVGIESLFPLYSPNIKEIKVLEKKKVRRAKLYYLRDKMNALKK 405

[Close]

BLAST of Carg23713 vs. TrEMBL
Match: tr|A0A1S3CHF9|A0A1S3CHF9_CUCME (50S ribosomal protein L19-2, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.3e-91
Identity = 196/269 (72.86%), Postives = 208/269 (77.32%), Query Frame = 0


Query: 15  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSME------CSFGNPYASLS 74
           MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDA CSCSAP  ME      C FG  Y SLS
Sbjct: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDASCSCSAPMLMENSFTIPCLFGKSYGSLS 60

Query: 75  G-----------------QSKSGSLSF--------------QSLRPHSYQLAEIAAPFSR 134
           G                 ++ S  + F              QS RPH +QLAEIAAPFS 
Sbjct: 61  GSLWRSFSWSGNQYPEAFKNMSSQMEFVALRKHASSTFSVIQSSRPHFFQLAEIAAPFSS 120

Query: 135 RGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPD 194
           RGIATTSS  SA  GSPAVDS I PRIKFKRLDKTS++IMQILDKEA+ EV KA REIPD
Sbjct: 121 RGIATTSSMGSALLGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEV-KAHREIPD 180

Query: 195 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPN 247
           IKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVGIESLFPLYSPN
Sbjct: 181 IKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPLYSPN 240

[Close]

BLAST of Carg23713 vs. TrEMBL
Match: tr|A0A1S3CHC3|A0A1S3CHC3_CUCME (50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 1.7e-91
Identity = 196/270 (72.59%), Postives = 208/270 (77.04%), Query Frame = 0


Query: 15  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSME------CSFGNPYASLS 74
           MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDA CSCSAP  ME      C FG  Y SLS
Sbjct: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDASCSCSAPMLMENSFTIPCLFGKSYGSLS 60

Query: 75  G------------------QSKSGSLSF--------------QSLRPHSYQLAEIAAPFS 134
           G                  ++ S  + F              QS RPH +QLAEIAAPFS
Sbjct: 61  GSLWRSFSWSGNQYPEAFQKNMSSQMEFVALRKHASSTFSVIQSSRPHFFQLAEIAAPFS 120

Query: 135 RRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIP 194
            RGIATTSS  SA  GSPAVDS I PRIKFKRLDKTS++IMQILDKEA+ EV KA REIP
Sbjct: 121 SRGIATTSSMGSALLGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEV-KAHREIP 180

Query: 195 DIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSP 247
           DIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVGIESLFPLYSP
Sbjct: 181 DIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPLYSP 240

[Close]

BLAST of Carg23713 vs. TrEMBL
Match: tr|A0A1S3CHY3|A0A1S3CHY3_CUCME (50S ribosomal protein L19, chloroplastic-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 2.4e-90
Identity = 191/238 (80.25%), Postives = 201/238 (84.45%), Query Frame = 0


Query: 15  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSME------CSFGNPYASLS 74
           MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDA CSCSAP  ME      C FG  Y SLS
Sbjct: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDASCSCSAPMLMENSFTIPCLFGKSYGSLS 60

Query: 75  GQSKSGSLSFQSLRPHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKR 134
           G S   S S+   +     LAEIAAPFS RGIATTSS  SA  GSPAVDS I PRIKFKR
Sbjct: 61  G-SLWRSFSWSGNQYPEAFLAEIAAPFSSRGIATTSSMGSALLGSPAVDSVIPPRIKFKR 120

Query: 135 LDKTSKYIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARR 194
           LDKTS++IMQILDKEA+ EV KA REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARR
Sbjct: 121 LDKTSRHIMQILDKEAVEEV-KAHREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARR 180

Query: 195 NAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKK 247
           NAGLN+TFR+RR+VAGVGIESLFPLYSPNIKEI VL+KKKVRRAKLYYLRDKMNALKK
Sbjct: 181 NAGLNSTFRIRRVVAGVGIESLFPLYSPNIKEIKVLEKKKVRRAKLYYLRDKMNALKK 236

[Close]

BLAST of Carg23713 vs. TrEMBL
Match: tr|A0A2P4JC30|A0A2P4JC30_QUESU (50s ribosomal protein l19, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_51513 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.3e-59
Identity = 140/197 (71.07%), Postives = 152/197 (77.16%), Query Frame = 0


Query: 51  SAPRSMECSFGNPYASLSGQSKSGSLSFQSLRPHSYQLAEIAAPFSRRGIATTSST-ESA 110
           S+  +M   F N   S+S  S+S        RP     A +  PFS R I T  +T ESA
Sbjct: 91  SSQAAMATPFNNGMPSVSVSSRSS-------RPVLLHWAAVLPPFSSRCITTVENTVESA 150

Query: 111 PQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVE 170
            Q S A   D+TPRIKFKRLDKT+K+IMQILDKEA+ EV +A REIPDIKPGYIVQLKV 
Sbjct: 151 SQDSSASIPDVTPRIKFKRLDKTAKHIMQILDKEAVEEV-RANREIPDIKPGYIVQLKVV 210

Query: 171 VPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKV 230
           VPENKRRVS LKGIVIARRNAGLNTTFRLRRLVAGVG+ESLFPLYSPNIKEI VLDKKKV
Sbjct: 211 VPENKRRVSVLKGIVIARRNAGLNTTFRLRRLVAGVGVESLFPLYSPNIKEIKVLDKKKV 270

Query: 231 RRAKLYYLRDKMNALKK 247
           RRAKLYYLRDKMNALKK
Sbjct: 271 RRAKLYYLRDKMNALKK 279

The following BLAST results are available for this feature:

BLAST of Carg23713 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970336.1	1.1e-102	80.30	50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima] >X...	[more]
KGN64844.1	6.9e-97	73.24	hypothetical protein Csa_1G126060 [Cucumis sativus]	[more]
XP_022955270.1	3.5e-93	73.70	54S ribosomal protein subunit img1, mitochondrial-like isoform X2 [Cucurbita mos...	[more]
XP_022955269.1	4.6e-93	73.43	54S ribosomal protein subunit img1, mitochondrial-like isoform X1 [Cucurbita mos...	[more]
XP_011654038.1	3.0e-92	73.61	PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativu...	[more]

BLAST of Carg23713 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11750.1	2.2e-57	74.68	Ribosomal protein L19 family protein	[more]
AT4G11630.1	7.2e-56	73.20	Ribosomal protein L19 family protein	[more]
AT1G24240.1	2.3e-54	62.30	Ribosomal protein L19 family protein	[more]
AT4G17560.1	6.1e-31	58.72	Ribosomal protein L19 family protein	[more]
AT5G47190.1	8.0e-31	58.72	Ribosomal protein L19 family protein	[more]

BLAST of Carg23713 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8W463\|RK191_ARATH	1.1e-29	58.72	50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
sp\|Q8RXX5\|RK192_ARATH	1.4e-29	58.72	50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
sp\|P82413\|RK19_SPIOL	3.2e-29	52.17	50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 P...	[more]
sp\|A5G0G7\|RL19_ACICJ	8.7e-19	46.23	50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl...	[more]
sp\|Q2G8H1\|RL19_NOVAD	9.7e-18	49.06	50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278...	[more]

BLAST of Carg23713 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV41\|A0A0A0LV41_CUCSA	4.5e-97	73.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=4 SV=1	[more]
tr\|A0A1S3CHF9\|A0A1S3CHF9_CUCME	1.3e-91	72.86	50S ribosomal protein L19-2, chloroplastic-like isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S3CHC3\|A0A1S3CHC3_CUCME	1.7e-91	72.59	50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S3CHY3\|A0A1S3CHY3_CUCME	2.4e-90	80.25	50S ribosomal protein L19, chloroplastic-like isoform X3 OS=Cucumis melo OX=3656...	[more]
tr\|A0A2P4JC30\|A0A2P4JC30_QUESU	1.3e-59	71.07	50s ribosomal protein l19, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_5151...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR008991	Translation_prot_SH3-like_sf
IPR038657	L19_sf
IPR001857	Ribosomal_L19

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23713-RA	Carg23713-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PRINTS	PR00061	RIBOSOMALL19	coord: 142..171 score: 19.31 coord: 201..224 score: 39.24
IPR001857	Ribosomal protein L19	TIGRFAM	TIGR01024	TIGR01024	coord: 147..241 e-value: 2.1E-28 score: 96.7
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 147..242 e-value: 1.6E-30 score: 105.2
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 91..246
IPR038657	Ribosomal protein L19 superfamily	GENE3D	G3DSA:2.30.30.790		coord: 126..247 e-value: 1.2E-19 score: 72.3
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	SSF50104	Translation proteins SH3-like domain	coord: 151..242

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23713	Cla003417	Watermelon (97103) v1	carwmB0157
Carg23713	Csa1G126060	Cucumber (Chinese Long) v2	carcuB0185
Carg23713	MELO3C004891	Melon (DHL92) v3.5.1	carmeB0171
Carg23713	ClCG01G013640	Watermelon (Charleston Gray)	carwcgB0160
Carg23713	CSPI01G13820	Wild cucumber (PI 183967)	carcpiB0192
Carg23713	CmaCh13G002520	Cucurbita maxima (Rimu)	carcmaB0223
Carg23713	CmoCh13G002540	Cucurbita moschata (Rifu)	carcmoB0234
Carg23713	Lsi03G000440	Bottle gourd (USVL1VR-Ls)	carlsiB149
Carg23713	Cp4.1LG20g07290	Cucurbita pepo (Zucchini)	carcpeB0239
Carg23713	CsGy1G013840	Cucumber (Gy14) v2	carcgybB0180
Carg23713	MELO3C004891.2	Melon (DHL92) v3.6.1	carmedB0174
Carg23713	CsaV3_1G014020	Cucumber (Chinese Long) v3	carcucB0192
Carg23713	Cla97C01G012660	Watermelon (97103) v2	carwmbB0173
Carg23713	Bhi08G000157	Wax gourd	carwgoB0216

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23713	Cucurbita maxima (Rimu)	carcmaB0222
Carg23713	Cucurbita moschata (Rifu)	carcmoB0233
Carg23713	Cucurbita pepo (Zucchini)	carcpeB0240