Cla97C01G012660 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G012660
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	50S ribosomal protein L19-2, chloroplastic-like
Location	Cla97Chr01 : 25650708 .. 25654679 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGTTTACTAGTATGATTTGTTCTTGTGTTGTTTTCAGAGGTTCTATTATTCACTAAATTTACTTTAGTTTTATGCAATTGTTTTTGGAGGTTCTATAACTATTCACTAAATCTACTTTGGTTTTATACATATATAATTGCGACATTTATTCTACTTCGAATTGGAGGCTTTATGACTTCATTTATGCTTAACGTTTTAGTTCATAAGCAGTGAAACAAGTAAATATCATAATATCGGTCTTGGGCAGCACTCTTGATTGGTGGTAGGGAAATATGTATAGTTTCTTATCAAATGTGTATGTTATGCATGTATCCCTAATACTGACCAGACATGATATGTGTTAAATGTCTTATTGCTATAAGGTAACGTAGAGTATGAGTAATTAGCTAGAACTAACTCCTAGTTTAATTATGGATCTGAGCCATTTGCTGTGGGTGTGCCGGTTTGCAAAATACCCTTGGTATCAGTGGCAAATTTTCATTTGGAGTTAGTGGGGGTTGGGTGTTCTTTGTTGGTGGAAAAGTGATTTTGCACTCCCCTTCCTTTTAGGGAGAAGAGTGTTGTGGCAAGCAAGCTTCTTTGCTATTTTGTGGAGTATATTGGTTGGAGTGTAATCGTATTTGAGGTTGAGAGAAATCTAGAGAGGAAGTTTGGGAGTTGGTGAGGTTTAATCCTTCCATTTGGGTGTCGGTCACTCGATTGTTCTGTACTTTTGATATTGGTCTTGTTCTTTTGGATTGGAGTCTTTTTTGTAGTTAGTGTTAGTGAGGTTCATTGTCCAACTGTACCTGAATAACCTATTGAAACATGATTTACATAACTGCCTAATATGACTTACATAACTGCCTATATCACTCTTTCTAATAACATAGACATTCAGATCAACCACGCCCATAAATTCAATAACATGAGAATTTCATATTTACATAACTAGATACTCCAAACTCTTTCACAAATAAACTTAGATGACATATACAATAACGAGTCTCACATCCCAACTACTAGTTGGCTATGTTTACATGTCACATACACAAAGTTATTTACACATACAGCAACCGAAATGCAAAGTATCTTCTGATAACTCGAAGCTTAAGCAGTAGGCTAAGCACCGGGAACTTCTTCGCTACCTGGGTGGGAAAGAAAACATGGAAAACATGAGCTGAATGCCTAGCTCAGTGAGTGACATAGTATTTTAAACACAACTCGAGAACCAAATCATGCTCAATAATATAGAAAACAAAACTTTAGCATAAAACTCATGTTAAGCCTTGAAATAAAACATAAGTCAGGTCTTTTACATAAATACAGTTTACTAACTCATCAAACCTTTTAAAATTCCCTTAGTTGAGGCGGAGCAAGGCTCAACACACTTAATGTCGAAAACAAGGAGTAATCTCGACACACCCAACGTCGAAAACCTTAGCTGATGTAGGGTAACCTCAACACATCAACGTCATCAACCACTATGTGCACATAGGACTATCTCGAGATGCCCAAGTAGTACTAGGTCCCCAAGAAACTCAAATGACTTCTCAATGTTCTTTAGCATTGAGCTCCTTTAAGTCACAGGGTTGCCCACATGCCTTCTTAACGTCCCTCAGCATTAGGTCCCTTAGAAAACATTTTAGAAACATGTATGCTAAAACATTTAAATGGAAAACAGAGCATTTCTCAATAAATATCATCTTATAAACATGCTTTTCAAAAACTTGTAGAAAACAGATAAAACATGTCTTTCATGCCATAAAATCAAATATAACCAGCCATCATGCTTATCTTGTAATAAATCATCATAAAATCATATTTTATAAGAAAGTCTGGCTAAACATTTTAAATAGAATCGTTTTTAGAGAAAGAAAGGTGTCACCCACAATCTGGGCCTGTTCCTCAAGGTCTATAGGCTTTTCCAACCTTAATATGACCTGAAATATCAATTACGAGCCATTAGATCCTCTCCTTGAAGTCCTTACAATGATCACTTAACTACATTTCATCCACGTTGTCCATATCAAGCCTAATTTACACAATTTCTATCATTTTACGCTTTTAGGGACCTTTTTGCAAAATTCTCAAAATTTCCAAAAATGCTTAAAAATTCATATTTTCCATTTTTAGGCCAATAATTCAAGAAAATATCAATTTGGGTCCAAAAATGTTCAAAATTACCCAAAATAGCCGTAGGCAACCTTGGTGGGCAGCAGCTGTGCGAGGGGGTGTCAATAGGTGCAGGGCGTGGGCGCTGGGTGGGCGTGGGCGTGGGCAGCTCTGGCAGCCTCTTCGGCTAGTAGTGTTCTATTTCCAACCCGATTTTTCAGAACTCCAAAACACTATTTCCTTTTAAATAAAAATCAAATAAAAATTATGGAACTCAAGTTTAACCTCTTAACTAGCTTACCAAGAAAATTCAGCTCGAAAAACCTTCCTGAGTACCCTTGAAAAATTTCTCAAAGCTAACTCGTCTAATTTGCTCGGTTTCTGCGATAATCTTCAGTATTTTGACCATTTCTCAAGCTTCCCGACCTCAAATCACTTTGTCAGCCCTATGTCATCTTCCTAACTCACAGAGCTTCCTCTGGTTCAAAAATGGTGAAAATAGCACGAGGGAATCGGGAGAACCATCAGGTTAATTGAGCTGCTTGCCTAGAGTCCGAGCTGCTACCCAGACCAACCAATCAGCTTTAACCACTCACCAGCTTGCTTCAACGTGTCTCCTCTTCATTTCTCCTTATTCTAAACATCCAAATTAAATATAATTTTATTTAAATAATCATTTTAATTTAATTTAATATTTATTTCCTAATTCTTTCATTTTTCCAACGTAAGTTCGGTTTTCTTGTCAATTTTTGTTTTCTTTTTTGAAAAGCACTTTGCTATTGTCTGACTCATAGTTATTATGTATTCTATTTCCCCTTTCAACAAATTAAGTATAGAGAACCACATATTTATTTTGTAATTAGTCTGTCTGAAATGTAATTAGCTTGCATCAAGCTGATATAACTTTTAAGGGGAAAAAATGTGGTTATAGTTCTTTTCTTCTATGATACTTGCTAATTGGAGGGCCTTTCTGTAATTTCCTTGGCATCTATGGAGATTGGTTATCTTCCTCTTATTACCTCTTTTCTTTCAATATTCCTGCAAAACAGAAAAGCTGTCAACTATCCTAGTGAGAAATGTTTTAAGAAATTGTGTATATGAACTTTCTGTTGGTTTATGGGTACCATTTATTTAAGAGTCTATTTTGTAATTTATCCCTTTGTAACAATTTATACAACTATTTAGCAGAAAAATACGAGCTCCCAAATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACTTGTTCAGCATTCCAAAGTTTTTGGCCACATATATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCTACGACAAGCTCGATGGAATCATCTCTACAAGGATCCACTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGGTATTCACATTTCTGAGTATTGTTGGAAAAGTAGTTTCATTTCATCTTCCATTTGTTTGCTTTCAATATATTGCTTTCTTTTCCCTACAGATTTTAGATAAGGAAGCTGTTGAGGAGGCAAAAGCACAAAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGTAAAGTTCAGTCAAATTATTATCATGTTGCATTACTTTCAGATAATGTTCTTATTCTAAACAGCAGTTGTAGATGAGGTTATGGAACAGTTTTTTGGCTTTTCTTGTTATGTGTGAACAGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGCTGGGATTGAGTCCCTCTTCCCTCTGTAA

mRNA sequence

ATGGTCAAAAATACGAGCTCCCAAATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACTTGTTCAGCATTCCAAAGTTTTTGGCCACATATATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCTACGACAAGCTCGATGGAATCATCTCTACAAGGATCCACTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGGTATTCACATTTCTGAGTATTGTTGGAAAAGTAGTTTCATTTCATCTTCCATTTGTTTGCTTTCAATATATTGCTTTCTTTTCCCTACAGATTTTAGATAAGGAAGCTGTTGAGGAGGCAAAAGCACAAAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGCTGGGATTGAGTCCCTCTTCCCTCTGTAA

Coding sequence (CDS)

ATGGTCAAAAATACGAGCTCCCAAATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACTTGTTCAGCATTCCAAAGTTTTTGGCCACATATATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCTACGACAAGCTCGATGGAATCATCTCTACAAGGATCCACTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGGTATTCACATTTCTGAGTATTGTTGGAAAAGTAGTTTCATTTCATCTTCCATTTGTTTGCTTTCAATATATTGCTTTCTTTTCCCTACAGATTTTAGATAAGGAAGCTGTTGAGGAGGCAAAAGCACAAAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGCTGGGATTGAGTCCCTCTTCCCTCTGTAA

Protein sequence

MVKNTSSQMEFVPSRKHVSSTCSAFQSFWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAGIESLFPL

Homology

[Close]

BLAST of Cla97C01G012660 vs. NCBI nr
Match: XP_023522393.1 (50S ribosomal protein L19, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 1.4e-62
Identity = 139/188 (73.94%), Postives = 146/188 (77.66%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSFWPHIFQLAEIAAPF-SSRGIATTSSMESSLQGST 62
           ++  SQMEFVPSR HV+STCSAFQS W H FQLAEIAAPF SSRGIATTSSMES+ QGS 
Sbjct: 44  RSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPFSSSRGIATTSSMESAPQGSP 103

Query: 63  AVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEA 122
           AVDSDITPRIKFKRLDKTS+HIM                              QILDKEA
Sbjct: 104 AVDSDITPRIKFKRLDKTSKHIM------------------------------QILDKEA 163

Query: 123 VEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGA 182
           + E KAQREIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRRLVAG 
Sbjct: 164 IGEVKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGV 201

Query: 183 GIESLFPL 190
           GIESLFPL
Sbjct: 224 GIESLFPL 201

[Close]

BLAST of Cla97C01G012660 vs. NCBI nr
Match: XP_023522394.1 (uncharacterized protein LOC111786317 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 1.4e-62
Identity = 139/188 (73.94%), Postives = 146/188 (77.66%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSFWPHIFQLAEIAAPF-SSRGIATTSSMESSLQGST 62
           ++  SQMEFVPSR HV+STCSAFQS W H FQLAEIAAPF SSRGIATTSSMES+ QGS 
Sbjct: 44  RSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPFSSSRGIATTSSMESAPQGSP 103

Query: 63  AVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEA 122
           AVDSDITPRIKFKRLDKTS+HIM                              QILDKEA
Sbjct: 104 AVDSDITPRIKFKRLDKTSKHIM------------------------------QILDKEA 163

Query: 123 VEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGA 182
           + E KAQREIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRRLVAG 
Sbjct: 164 IGEVKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGV 201

Query: 183 GIESLFPL 190
           GIESLFPL
Sbjct: 224 GIESLFPL 201

[Close]

BLAST of Cla97C01G012660 vs. NCBI nr
Match: XP_011654038.1 (PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus] >XP_011654046.1 PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61
Identity = 138/187 (73.80%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSFWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           KN SSQMEFVP RKH SST SAFQS  PH FQLAE AAPFSSRGIATTSSMES+LQGS A
Sbjct: 79  KNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPA 138

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 139 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 198

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAG G
Sbjct: 199 EEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 235

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 259 IESLFPL 235

[Close]

BLAST of Cla97C01G012660 vs. NCBI nr
Match: KGN64844.1 (hypothetical protein Csa_1G126060 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61
Identity = 138/187 (73.80%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSFWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           KN SSQMEFVP RKH SST SAFQS  PH FQLAE AAPFSSRGIATTSSMES+LQGS A
Sbjct: 216 KNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPA 275

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 276 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 335

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAG G
Sbjct: 336 EEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 372

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 396 IESLFPL 372

[Close]

BLAST of Cla97C01G012660 vs. NCBI nr
Match: XP_023542738.1 (54S ribosomal protein subunit img1, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 7.9e-61
Identity = 136/187 (72.73%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSFWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           K+  SQMEF+PS K VSSTC AFQS   H+FQLAEIAAPFSSRGIATTSSMES+ QGS+ 
Sbjct: 80  KDMGSQMEFLPSGKRVSSTCPAFQSPRKHLFQLAEIAAPFSSRGIATTSSMESAPQGSSG 139

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           +D+DITPRIKFKRLDKTS+HIM                              QILDKEAV
Sbjct: 140 IDTDITPRIKFKRLDKTSKHIM------------------------------QILDKEAV 199

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA+REIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAG G
Sbjct: 200 EEVKAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 236

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 260 IESLFPL 236

[Close]

BLAST of Cla97C01G012660 vs. TrEMBL
Match: tr|A0A0A0LV41|A0A0A0LV41_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.4e-61
Identity = 138/187 (73.80%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSFWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           KN SSQMEFVP RKH SST SAFQS  PH FQLAE AAPFSSRGIATTSSMES+LQGS A
Sbjct: 216 KNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPA 275

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 276 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 335

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAG G
Sbjct: 336 EEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 372

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 396 IESLFPL 372

[Close]

BLAST of Cla97C01G012660 vs. TrEMBL
Match: tr|A0A1S3CHC3|A0A1S3CHC3_CUCME (50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.4e-58
Identity = 134/187 (71.66%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSFWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           KN SSQMEFV  RKH SST S  QS  PH FQLAEIAAPFSSRGIATTSSM S+L GS A
Sbjct: 80  KNMSSQMEFVALRKHASSTFSVIQSSRPHFFQLAEIAAPFSSRGIATTSSMGSALLGSPA 139

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 140 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 199

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAG G
Sbjct: 200 EEVKAHREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 236

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 260 IESLFPL 236

[Close]

BLAST of Cla97C01G012660 vs. TrEMBL
Match: tr|A0A1S3CHF9|A0A1S3CHF9_CUCME (50S ribosomal protein L19-2, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.4e-58
Identity = 134/187 (71.66%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSFWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           KN SSQMEFV  RKH SST S  QS  PH FQLAEIAAPFSSRGIATTSSM S+L GS A
Sbjct: 79  KNMSSQMEFVALRKHASSTFSVIQSSRPHFFQLAEIAAPFSSRGIATTSSMGSALLGSPA 138

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 139 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 198

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAG G
Sbjct: 199 EEVKAHREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 235

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 259 IESLFPL 235

[Close]

BLAST of Cla97C01G012660 vs. TrEMBL
Match: tr|A0A1S3CHY3|A0A1S3CHY3_CUCME (50S ribosomal protein L19, chloroplastic-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.3e-47
Identity = 114/161 (70.81%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 29  WPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQVFT 88
           +P  F LAEIAAPFSSRGIATTSSM S+L GS AVDS I PRIKFKRLDKTSRHIM    
Sbjct: 74  YPEAF-LAEIAAPFSSRGIATTSSMGSALLGSPAVDSVIPPRIKFKRLDKTSRHIM---- 133

Query: 89  FLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPE 148
                                     QILDKEAVEE KA REIPDIKPGYIVQLKVEVPE
Sbjct: 134 --------------------------QILDKEAVEEVKAHREIPDIKPGYIVQLKVEVPE 193

Query: 149 NKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAGIESLFPL 190
           NKRR+STLKGIVIARRNAGLN+TFR+RR+VAG GIESLFPL
Sbjct: 194 NKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPL 203

[Close]

BLAST of Cla97C01G012660 vs. TrEMBL
Match: tr|A0A2P4JC30|A0A2P4JC30_QUESU (50s ribosomal protein l19, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_51513 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 101/178 (56.74%), Postives = 116/178 (65.17%), Query Frame = 0


Query: 13  PSRKHVSSTCSAFQSFWPHIFQLAEIAAPFSSRGIATT-SSMESSLQGSTAVDSDITPRI 72
           P    + S   + +S  P +   A +  PFSSR I T  +++ES+ Q S+A   D+TPRI
Sbjct: 99  PFNNGMPSVSVSSRSSRPVLLHWAAVLPPFSSRCITTVENTVESASQDSSASIPDVTPRI 158

Query: 73  KFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAVEEAKAQREI 132
           KFKRLDKT++HIM                              QILDKEAVEE +A REI
Sbjct: 159 KFKRLDKTAKHIM------------------------------QILDKEAVEEVRANREI 218

Query: 133 PDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAGIESLFPL 190
           PDIKPGYIVQLKV VPENKRRVS LKGIVIARRNAGLNTTFRLRRLVAG G+ESLFPL
Sbjct: 219 PDIKPGYIVQLKVVVPENKRRVSVLKGIVIARRNAGLNTTFRLRRLVAGVGVESLFPL 246

[Close]

BLAST of Cla97C01G012660 vs. Swiss-Prot
Match: sp|P82413|RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.7e-18
Identity = 43/74 (58.11%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 116 ILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           IL+K+AV  A+  R +P I+ G IVQ+++EVPENKRR+S  KGIVI+R+NAG++TT R+R
Sbjct: 125 ILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIR 184

Query: 176 RLVAGAGIESLFPL 190
           R++AG G+E +FPL
Sbjct: 185 RIIAGVGVEIVFPL 198

[Close]

BLAST of Cla97C01G012660 vs. Swiss-Prot
Match: sp|Q8W463|RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 40/74 (54.05%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 116 ILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           IL+++A+E A+  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 117 ILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 176

Query: 176 RLVAGAGIESLFPL 190
           R++AG G+E +FP+
Sbjct: 177 RIIAGIGVEIVFPI 190

[Close]

BLAST of Cla97C01G012660 vs. Swiss-Prot
Match: sp|Q8RXX5|RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-17
Identity = 39/74 (52.70%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 116 ILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           +L+K+A+E A+  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 121 LLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 180

Query: 176 RLVAGAGIESLFPL 190
           R++AG G+E +FP+
Sbjct: 181 RIIAGIGVEIVFPI 194

[Close]

BLAST of Cla97C01G012660 vs. Swiss-Prot
Match: sp|B6IP95|RL19_RHOCS (50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplS PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-10
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 114 LQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNTTF 173
           LQ L++E V +  A + IP   PG  V++ V+V E  R RV   +G+VIAR+NAGLN++F
Sbjct: 4   LQQLEQEQVAKLTAGKTIPAFSPGDTVRVNVKVVEGTRERVQAYEGVVIARKNAGLNSSF 63

Query: 174 RLRRLVAGAGIESLFPL 190
            +R++  G G+E +FPL
Sbjct: 64  TVRKISYGEGVERVFPL 80

[Close]

BLAST of Cla97C01G012660 vs. Swiss-Prot
Match: sp|Q2G8H1|RL19_NOVAD (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplS PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-10
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 114 LQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNTTF 173
           +Q L+ EA+ E KA++EIPD + G  V++ V V E +R RV   +G+ IAR N GL + F
Sbjct: 4   IQQLEAEAIAEFKAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGSNF 63

Query: 174 RLRRLVAGAGIESLFPL 190
            +R++  G G+E +FPL
Sbjct: 64  TVRKISFGEGVERVFPL 80

[Close]

BLAST of Cla97C01G012660 vs. TAIR10
Match: AT4G11630.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 148.3 bits (373), Expect = 4.8e-36
Identity = 84/148 (56.76%), Postives = 102/148 (68.92%), Query Frame = 0


Query: 42  FSSRGIATTSSMESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHL 101
           ++SR  +TT   +SS+QGS   D  +  RIKFKRLDKT++HIM                 
Sbjct: 76  YASRCFSTTG--DSSVQGSPESDCVVPQRIKFKRLDKTAKHIM----------------- 135

Query: 102 PFVCFQYIAFFSLQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVI 161
                        QI+DKEAVEE ++ REIP+IKPGYIVQLKVEVPENKRRVS +KG+VI
Sbjct: 136 -------------QIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVI 191

Query: 162 ARRNAGLNTTFRLRRLVAGAGIESLFPL 190
           ARRNAGLN+TFR+RRLVAG G+ES+FPL
Sbjct: 196 ARRNAGLNSTFRIRRLVAGVGVESMFPL 191

[Close]

BLAST of Cla97C01G012660 vs. TAIR10
Match: AT1G24240.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 147.5 bits (371), Expect = 8.2e-36
Identity = 85/148 (57.43%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 42  FSSRGIATTSSMESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHL 101
           FSSR  +TT     S+QGS   D  +  RIKFKRLDKT++HIM                 
Sbjct: 74  FSSRCFSTTG---DSVQGSPESDCVVPQRIKFKRLDKTAKHIM----------------- 133

Query: 102 PFVCFQYIAFFSLQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVI 161
                        QI+DKEAVEE +  REIP+IKPGYIVQLKVEVPENKRRVS +KG+VI
Sbjct: 134 -------------QIVDKEAVEEVRTLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVI 188

Query: 162 ARRNAGLNTTFRLRRLVAGAGIESLFPL 190
           ARRNAGLN+TFR+RRLVAG G+ES+FPL
Sbjct: 194 ARRNAGLNSTFRIRRLVAGVGVESMFPL 188

[Close]

BLAST of Cla97C01G012660 vs. TAIR10
Match: AT5G11750.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 145.6 bits (366), Expect = 3.1e-35
Identity = 84/149 (56.38%), Postives = 101/149 (67.79%), Query Frame = 0


Query: 42  FSSRGIATT-SSMESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFH 101
           +S R  +TT  S++S+ QGS   D  +  RIKFKRLDKT++HIM                
Sbjct: 77  YSLRCFSTTGDSVQSTPQGSPESDCVVPQRIKFKRLDKTAKHIM---------------- 136

Query: 102 LPFVCFQYIAFFSLQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIV 161
                         QI+DKEAVEE +  REIP+IKPGYIVQLKVEVPENKRRVS +KG+V
Sbjct: 137 --------------QIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVV 195

Query: 162 IARRNAGLNTTFRLRRLVAGAGIESLFPL 190
           IARRNAGLN+TFR+RRLVAG G+ES+FPL
Sbjct: 197 IARRNAGLNSTFRIRRLVAGVGVESMFPL 195

[Close]

BLAST of Cla97C01G012660 vs. TAIR10
Match: AT4G17560.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-18
Identity = 40/74 (54.05%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 116 ILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           IL+++A+E A+  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 117 ILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 176

Query: 176 RLVAGAGIESLFPL 190
           R++AG G+E +FP+
Sbjct: 177 RIIAGIGVEIVFPI 190

[Close]

BLAST of Cla97C01G012660 vs. TAIR10
Match: AT5G47190.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-18
Identity = 39/74 (52.70%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 116 ILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           +L+K+A+E A+  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 121 LLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 180

Query: 176 RLVAGAGIESLFPL 190
           R++AG G+E +FP+
Sbjct: 181 RIIAGIGVEIVFPI 194

The following BLAST results are available for this feature:

BLAST of Cla97C01G012660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522393.1	1.4e-62	73.94	50S ribosomal protein L19, chloroplastic-like isoform X1 [Cucurbita pepo subsp. ...	[more]
XP_023522394.1	1.4e-62	73.94	uncharacterized protein LOC111786317 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_011654038.1	2.1e-61	73.80	PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativu...	[more]
KGN64844.1	2.1e-61	73.80	hypothetical protein Csa_1G126060 [Cucumis sativus]	[more]
XP_023542738.1	7.9e-61	72.73	54S ribosomal protein subunit img1, mitochondrial-like isoform X1 [Cucurbita pep...	[more]

BLAST of Cla97C01G012660 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV41\|A0A0A0LV41_CUCSA	1.4e-61	73.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=4 SV=1	[more]
tr\|A0A1S3CHC3\|A0A1S3CHC3_CUCME	2.4e-58	71.66	50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S3CHF9\|A0A1S3CHF9_CUCME	2.4e-58	71.66	50S ribosomal protein L19-2, chloroplastic-like isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S3CHY3\|A0A1S3CHY3_CUCME	4.3e-47	70.81	50S ribosomal protein L19, chloroplastic-like isoform X3 OS=Cucumis melo OX=3656...	[more]
tr\|A0A2P4JC30\|A0A2P4JC30_QUESU	1.3e-38	56.74	50s ribosomal protein l19, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_5151...	[more]

BLAST of Cla97C01G012660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82413\|RK19_SPIOL	5.7e-18	58.11	50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 P...	[more]
sp\|Q8W463\|RK191_ARATH	2.2e-17	54.05	50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
sp\|Q8RXX5\|RK192_ARATH	3.7e-17	52.70	50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
sp\|B6IP95\|RL19_RHOCS	4.3e-10	45.45	50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
sp\|Q2G8H1\|RL19_NOVAD	5.7e-10	44.16	50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278...	[more]

BLAST of Cla97C01G012660 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G11630.1	4.8e-36	56.76	Ribosomal protein L19 family protein	[more]
AT1G24240.1	8.2e-36	57.43	Ribosomal protein L19 family protein	[more]
AT5G11750.1	3.1e-35	56.38	Ribosomal protein L19 family protein	[more]
AT4G17560.1	1.2e-18	54.05	Ribosomal protein L19 family protein	[more]
AT5G47190.1	2.0e-18	52.70	Ribosomal protein L19 family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR008991	Translation_prot_SH3-like_sf
IPR038657	L19_sf
IPR001857	Ribosomal_L19

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G012660.1	Cla97C01G012660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 121..189 e-value: 6.7E-15 score: 54.9
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 114..189
IPR038657	Ribosomal protein L19 superfamily	GENE3D	G3DSA:2.30.30.790		coord: 105..189 e-value: 1.1E-5 score: 27.2
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	SSF50104	Translation proteins SH3-like domain	coord: 117..189

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G012660	Cla003417	Watermelon (97103) v1	wmwmbB248
Cla97C01G012660	Csa1G126060	Cucumber (Chinese Long) v2	cuwmbB002
Cla97C01G012660	MELO3C004891	Melon (DHL92) v3.5.1	mewmbB134
Cla97C01G012660	ClCG01G013640	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G012660	CSPI01G13820	Wild cucumber (PI 183967)	cpiwmbB002
Cla97C01G012660	Cucsa.206800	Cucumber (Gy14) v1	cgywmbB385
Cla97C01G012660	CmaCh18G001950	Cucurbita maxima (Rimu)	cmawmbB395
Cla97C01G012660	CmaCh13G002520	Cucurbita maxima (Rimu)	cmawmbB209
Cla97C01G012660	CmoCh13G002540	Cucurbita moschata (Rifu)	cmowmbB193
Cla97C01G012660	CmoCh18G001570	Cucurbita moschata (Rifu)	cmowmbB379
Cla97C01G012660	Lsi03G000440	Bottle gourd (USVL1VR-Ls)	lsiwmbB216
Cla97C01G012660	CsGy1G013840	Cucumber (Gy14) v2	cgybwmbB003
Cla97C01G012660	MELO3C004891.2	Melon (DHL92) v3.6.1	medwmbB127
Cla97C01G012660	Carg23713	Silver-seed gourd	carwmbB0173
Cla97C01G012660	Carg06755	Silver-seed gourd	carwmbB0514
Cla97C01G012660	CsaV3_1G014020	Cucumber (Chinese Long) v3	cucwmbB002
Cla97C01G012660	Bhi08G000157	Wax gourd	wgowmbB461

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G012660	Cucurbita maxima (Rimu)	cmawmbB163
Cla97C01G012660	Cucurbita moschata (Rifu)	cmowmbB149