Carg09375 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09375
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_018 : 960740 .. 962094 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACCACCGGTAGGATTCTCTAGTTCGACTGAGTAGGGCTGTAAATTTGTAAACCCTCGATTTAGGGTTTATCTTGTTCATTCTTCAATCTCTTCATCTGTCTTTCTCGGGTGAATATGGCGAACGAGAAACGGTCATCTACAGGGCCATGGATCCTCGAAGCAATGCCTTTCATCGTTGTTCTTCTCATAGCAGCTCATGTCTTTGCTTTGGTACTCTCTAACTCCGATTTTTGTTTCGTTTTTTTGCATTGTATTCAAGCTCTGTACTCTGTTGTTTCTCATTTCCTCTTGATTTCTGTAGGTATATTGGATTTATAAGTTGGCAGCCCAAAAACAACCTCCGAGGAGGAAGGCACACTGAGTTACTGTATGATTCGTTCCTGAAAGAAACTTCAGTGAAACCGAATTCGTTAATTATTGCGTATCTGATGTTGAGGAGGCGGTCACAAAAGCCATGTAACGATGTTTCTCTGTAAGTATCCATCAGTATGTACTCTCAGAATCTCAGTTTCGTATTGTAAGAATATGGAAATGTTTCTTACAAACCAAATTTGATTTGTATGGTTTTTCAATTCATAGAATTATAAGGCGATCCGTTGATATATCTGTAATCTTGTTTGGTTTTCATTATCTTGAAAAGCTGGCTTATTCGTTTATTAGCATGCTTCCATCACGATAGGTGAGGAATCACCAGGTCAAGAAATGATCGAATACATTTTATTCTGAGTCCATTATTGAAGAGTCTGTTTTCGGTACATATAAACTACAACTTTAACATTCGAAACTTTTTAAGGAAAAGATAAAAGAGTTGGGGAAAGTATCCTTGCTGTAGATTTCTCCATTAAGAGTAACTGGCTCTGCTTCTTGTTCCACGAAGAAATGGATTGCTGCTGCTGCTTCTTGTGGAGTGAGAGCTCCATTAATTCCTAGCAGAATTAGTGAATAGTGACAAAACTTTTCTAACTAGGCAAATTTTGCTTGAACTCGTGCAGCACTTTTAATATCATTGTGTGAGATCCCACGTCGATTCGAGAGGAGAACGAAACATTCTTTATAAGAGTGTGGAAATCTCTCTCTAACAGACGTGTCTTAAAAACTTTGAGGAGAAGTTCGAAGGGAAAAGCTCAAAAAGGACAATATCTGCTAGCAATGGACTTGGGTTATTACACATTGTTTATTACGTGCTTTTTATATATATTTATAAAAAGAATCTCCTAGTTTTGGTAATGGTTTTAGCTGGACTCTTGAACATACATTAGTGGAAGTACCTTTTTCCAGCTCATTTTCTGTTGAAGATGAATGGGCCATCAAATCAACTAATATAATGTCTAAAGTGTGTTTGTAGTAATTT

mRNA sequence

CTTCACCACCGGTAGGATTCTCTAGTTCGACTGAGTAGGGCTGTAAATTTGTAAACCCTCGATTTAGGGTTTATCTTGTTCATTCTTCAATCTCTTCATCTGTCTTTCTCGGGTGAATATGGCGAACGAGAAACGGTCATCTACAGGGCCATGGATCCTCGAAGCAATGCCTTTCATCGTTGTTCTTCTCATAGCAGCTCATGTCTTTGCTTTGGTATATTGGATTTATAAGTTGGCAGCCCAAAAACAACCTCCGAGGAGGAAGGCACACTGAGTTACTGTATGATTCGTTCCTGAAAGAAACTTCAGTGAAACCGAATTCGTTAATTATTGCGTATCTGATGTTGAGGAGGCGGTCACAAAAGCCATGTAACGATGTTTCTCTGTAAGTATCCATCAGTATGTACTCTCAGAATCTCAGTTTCGTATTGTAAGAATATGGAAATGTTTCTTACAAACCAAATTTGATTTGTATGGTTTTTCAATTCATAGAATTATAAGGCGATCCGTTGATATATCTGTAATCTTGTTTGGTTTTCATTATCTTGAAAAGCTGGCTTATTCGTTTATTAGCATGCTTCCATCACGATAGGTGAGGAATCACCAGGTCAAGAAATGATCGAATACATTTTATTCTGAGTCCATTATTGAAGAGTCTGTTTTCGGTACATATAAACTACAACTTTAACATTCGAAACTTTTTAAGGAAAAGATAAAAGAGTTGGGGAAAGTATCCTTGCTGTAGATTTCTCCATTAAGAGTAACTGGCTCTGCTTCTTGTTCCACGAAGAAATGGATTGCTGCTGCTGCTTCTTGTGGAGTGAGAGCTCCATTAATTCCTAGCAGAATTAGTGAATAGTGACAAAACTTTTCTAACTAGGCAAATTTTGCTTGAACTCGTGCAGCACTTTTAATATCATTGTGTGAGATCCCACGTCGATTCGAGAGGAGAACGAAACATTCTTTATAAGAGTGTGGAAATCTCTCTCTAACAGACGTGTCTTAAAAACTTTGAGGAGAAGTTCGAAGGGAAAAGCTCAAAAAGGACAATATCTGCTAGCAATGGACTTGGGTTATTACACATTGTTTATTACGTGCTTTTTATATATATTTATAAAAAGAATCTCCTAGTTTTGGTAATGGTTTTAGCTGGACTCTTGAACATACATTAGTGGAAGTACCTTTTTCCAGCTCATTTTCTGTTGAAGATGAATGGGCCATCAAATCAACTAATATAATGTCTAAAGTGTGTTTGTAGTAATTT

Coding sequence (CDS)

ATGGCGAACGAGAAACGGTCATCTACAGGGCCATGGATCCTCGAAGCAATGCCTTTCATCGTTGTTCTTCTCATAGCAGCTCATGTCTTTGCTTTGGTATATTGGATTTATAAGTTGGCAGCCCAAAAACAACCTCCGAGGAGGAAGGCACACTGA

Protein sequence

MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH

Homology

[Close]

BLAST of Carg09375 vs. NCBI nr
Match: PON94578.1 (Transmembrane protein [Trema orientalis])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE+ S   PW+L+A+P +VVLLIAAHVFALVYWIY+LA +KQP RRKAH
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg09375 vs. NCBI nr
Match: PON73170.1 (Transmembrane protein [Parasponia andersonii])

HSP 1 Score: 78.6 bits (192), Expect = 7.0e-12
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE+ S   PW+L+ +P IVVLLIA HVFALVYWIY+LA +KQP RRKAH
Sbjct: 1  MANEQLSPARPWLLDVVPLIVVLLIAVHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg09375 vs. NCBI nr
Match: KCW82642.1 (hypothetical protein EUGRSUZ_C04026, partial [Eucalyptus grandis])

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
           MAN++  S  PWI++A P++VVLLIAAHVFALVYWIY+LA +KQP RRKAH
Sbjct: 54  MANQQTPSR-PWIMDAAPYLVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 103

[Close]

BLAST of Carg09375 vs. NCBI nr
Match: XP_018833637.1 (PREDICTED: uncharacterized protein LOC109000993 [Juglans regia] >XP_018833638.1 PREDICTED: uncharacterized protein LOC109000993 [Juglans regia] >XP_018833639.1 PREDICTED: uncharacterized protein LOC109000993 [Juglans regia])

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MANEKRSSTG-PWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MAN+  SS+  PW+LEA+P +VV+LIAAHV ALVYWIY+LA++KQP RRKAH
Sbjct: 1  MANQHHSSSSRPWLLEAVPLMVVVLIAAHVLALVYWIYRLASEKQPQRRKAH 52

[Close]

BLAST of Carg09375 vs. NCBI nr
Match: XP_023535177.1 (uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535179.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MAN+++  + PWIL+A+PFIVV+LIAAHV ALVYWIY+LA   +P RRKAH
Sbjct: 1  MANQQQVDSRPWILDAVPFIVVILIAAHVLALVYWIYRLATDNRPQRRKAH 51

[Close]

BLAST of Carg09375 vs. TAIR10
Match: AT5G10745.1 (unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 2.4e-06
Identity = 25/49 (51.02%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 5  KRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQK--QPPRRKAH 52
          K     PW L+ +P +VVLL AAHV AL YWIY+LA  +  Q  R K H
Sbjct: 3  KEQHLRPWFLDLVPALVVLLAAAHVIALGYWIYRLATDRRAQSQRGKFH 51

[Close]

BLAST of Carg09375 vs. TAIR10
Match: AT5G24980.1 (unknown protein)

HSP 1 Score: 42.7 bits (99), Expect = 7.7e-05
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 14 LEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRK 50
          ++ +P +VV L A HV ALVYWIY+LA+ + P R+K
Sbjct: 5  VDLVPAMVVFLAAVHVIALVYWIYRLASDRPPQRKK 40

[Close]

BLAST of Carg09375 vs. TrEMBL
Match: tr|A0A2P5F9W8|A0A2P5F9W8_9ROSA (Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_096130 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE+ S   PW+L+A+P +VVLLIAAHVFALVYWIY+LA +KQP RRKAH
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg09375 vs. TrEMBL
Match: tr|A0A2P5DIT2|A0A2P5DIT2_PARAD (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-12
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE+ S   PW+L+ +P IVVLLIA HVFALVYWIY+LA +KQP RRKAH
Sbjct: 1  MANEQLSPARPWLLDVVPLIVVLLIAVHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg09375 vs. TrEMBL
Match: tr|A0A2I4FPQ3|A0A2I4FPQ3_9ROSI (uncharacterized protein LOC109000993 OS=Juglans regia OX=51240 GN=LOC109000993 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-11
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MANEKRSSTG-PWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MAN+  SS+  PW+LEA+P +VV+LIAAHV ALVYWIY+LA++KQP RRKAH
Sbjct: 1  MANQHHSSSSRPWLLEAVPLMVVVLIAAHVLALVYWIYRLASEKQPQRRKAH 52

[Close]

BLAST of Carg09375 vs. TrEMBL
Match: tr|A0A2N9FKX1|A0A2N9FKX1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15441 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-11
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MANEKRSST-GPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE++SS+  PW L+ +P +VV+LIAAHVFALVYWIY+LA +KQP RRKAH
Sbjct: 1  MANEQQSSSLRPWFLDVVPLMVVVLIAAHVFALVYWIYRLATEKQPQRRKAH 52

[Close]

BLAST of Carg09375 vs. TrEMBL
Match: tr|A0A2U1LN60|A0A2U1LN60_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA415980 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-11
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MANEKR---SSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE++   SS+GPWILE +PFIVV+LIAAHV ALVYWIY++A +K P RRK H
Sbjct: 1  MANEEKQISSSSGPWILELVPFIVVVLIAAHVLALVYWIYRVATEKLPGRRKKH 54

The following BLAST results are available for this feature:

BLAST of Carg09375 vs. NCBI nr


Match Name	E-value	Identity	Description
PON94578.1	1.8e-12	72.55	Transmembrane protein [Trema orientalis]	[more]
PON73170.1	7.0e-12	70.59	Transmembrane protein [Parasponia andersonii]	[more]
KCW82642.1	4.5e-11	70.59	hypothetical protein EUGRSUZ_C04026, partial [Eucalyptus grandis]	[more]
XP_018833637.1	4.5e-11	69.23	PREDICTED: uncharacterized protein LOC109000993 [Juglans regia] >XP_018833638.1 ...	[more]
XP_023535177.1	4.5e-11	66.67	uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178....	[more]

BLAST of Carg09375 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10745.1	2.4e-06	51.02	unknown protein	[more]
AT5G24980.1	7.7e-05	52.78	unknown protein	[more]

BLAST of Carg09375 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09375 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5F9W8\|A0A2P5F9W8_9ROSA	1.2e-12	72.55	Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_096130 PE=4 SV=...	[more]
tr\|A0A2P5DIT2\|A0A2P5DIT2_PARAD	4.6e-12	70.59	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4...	[more]
tr\|A0A2I4FPQ3\|A0A2I4FPQ3_9ROSI	3.0e-11	69.23	uncharacterized protein LOC109000993 OS=Juglans regia OX=51240 GN=LOC109000993 P...	[more]
tr\|A0A2N9FKX1\|A0A2N9FKX1_FAGSY	3.0e-11	69.23	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15441 PE=4 SV=1	[more]
tr\|A0A2U1LN60\|A0A2U1LN60_ARTAN	3.0e-11	68.52	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA415980 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09375-RA	Carg09375-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35755	FAMILY NOT NAMED	coord: 1..50

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09375	Cla022376	Watermelon (97103) v1	carwmB0133
Carg09375	Csa4G651730	Cucumber (Chinese Long) v2	carcuB0156
Carg09375	MELO3C016940	Melon (DHL92) v3.5.1	carmeB0146
Carg09375	ClCG05G016050	Watermelon (Charleston Gray)	carwcgB0135
Carg09375	ClCG08G013840	Watermelon (Charleston Gray)	carwcgB0137
Carg09375	CSPI04G26000	Wild cucumber (PI 183967)	carcpiB0161
Carg09375	Cucsa.271300	Cucumber (Gy14) v1	carcgyB0173
Carg09375	CmaCh12G003740	Cucurbita maxima (Rimu)	carcmaB0183
Carg09375	CmaCh05G003390	Cucurbita maxima (Rimu)	carcmaB0189
Carg09375	CmoCh12G003270	Cucurbita moschata (Rifu)	carcmoB0192
Carg09375	Lsi08G012640	Bottle gourd (USVL1VR-Ls)	carlsiB128
Carg09375	Cp4.1LG07g03390	Cucurbita pepo (Zucchini)	carcpeB0205
Carg09375	Cp4.1LG11g02820	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09375	Cp4.1LG06g02800	Cucurbita pepo (Zucchini)	carcpeB0204
Carg09375	CsGy4G024320	Cucumber (Gy14) v2	carcgybB0154

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09375	Carg03965	Silver-seed gourd	carcarB168

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09375	Silver-seed gourd	carcarB163
Carg09375	Cucumber (Gy14) v2	carcgybB0148
Carg09375	Cucumber (Gy14) v1	carcgyB0171
Carg09375	Cucurbita moschata (Rifu)	carcmoB0196
Carg09375	Wild cucumber (PI 183967)	carcpiB0155
Carg09375	Cucumber (Chinese Long) v2	carcuB0150
Carg09375	Cucumber (Chinese Long) v3	carcucB0159
Carg09375	Cucumber (Chinese Long) v3	carcucB0164
Carg09375	Melon (DHL92) v3.5.1	carmeB0143
Carg09375	Melon (DHL92) v3.6.1	carmedB0147
Carg09375	Watermelon (97103) v1	carwmB0136
Carg09375	Watermelon (97103) v2	carwmbB0149
Carg09375	Wax gourd	carwgoB0173