Carg03965 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03965
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_011 : 1048703 .. 1051979 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGTAAATTTGTAAAATCCTCGATTTCGGTTTTGTATTGTTCATTCCTTCGGTCTCCTCACCGATCTTTCTCCGGCGAAAATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTATTAATTCCCTGACTCCGATCTCTTCGATCTTGAAATTGTGTTCAAACTCAAGTCTCGTGTTTTCTCACTTCCTTGCAATATTTGTAGGTGTATTGGATTTATAGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTGTATGATTCGTTCCTGAAAGAAACTTTAGGGAAACCCTAATTTGTTAATTGTTGTGTGACTGATGTTGTGGAGGCGGCCAAAAAGAGCCACATAACAATGTTTCTCTGTAAGTATCTGTCAGTGTGTACTCTCAGAATTTTTGTTTGGTATCATAAGAATGTGGAAATGTTTCTTACAAATCAATTTTGATTTGTATGGTTATTCAATTTATTGAAATTTGAAGGATCTTGTTTGGTTTTCGTTTTGGAAAGCTGATTTATTTGCTGATTTATACTAATTATATGAACAAACTTGGCTTTTATAGGACTTCTCCAAACTCATTTAGTTAATGTAGGTCTTAAGTTGTCGCTTGAAAGCATGTTTCCATTATGATAGGTGAAGAATCACCAGGTCAAGAAGTGAATGAAAGCATTTTATTCTGAAATCCATTGTTGAATACACTTTATTCTGAAATGTATTGTTGAAGAGTCTGTTTTACGATATTTAAAATCTACAATTCTGCTATTGAATTTCTTTATGAAAAAGAAAAAAAAACATTTGGGAACAAATATCTTGCTCGATTTCTCACTAGGAGTAGCTTCCTTGTACCATGGAGAACGAGTTGCTGCAGCTTCTTGTGGACTAAGAGATCCATTAACTTGTCTCCTACCAGAGTTCGTTAATAGTGACAAAATTTTTGTAGCTAGTCAAATTTTACCTGAAGTAGTGCTACTTTTTCCTAACGAAGCTTTGCTCAACTCAATTGACATAAAGTAGGTTTCTTCGACCAACAAATCAAAGGTTTGAATTTCTTGCCCCCCTTATTGTTGAACTCAAAACATGTGGTTAACTACTTTTGTATAGTCGGCAGGGTCTATCTGGGCTCTATTAGTCAAGAGTTCTCAATGTAAATTTCAGATCAACAGATCAATATGCCGTTTTGCTAGATTTTTAGTTGTTTTGGATCAAGATCACCTACAGTGTTGATCAAACGAGTCTTTTGTGAAATTATTTAATAAATATTAGTTTAAATAGTGGTGTCACTGAATGAATGAAATTATGTTTTCAGCGAAAAATCTAGTGATGAAGAAAGTGATTATTCAAGATACTCTATGAAAGAGGTAGATTTGGAGTTCCTTCTTAATACTAAATATAAATAGAAAGTTCTTACTAAATAATCTCATTTGCATGAAGCCTAAAAAATTTGTGATGGTTAATTTTCAGACCAACACCAATTGAGGCTTGATGGAATCGTAATTTGAATTTGATTTATTATAGGTTTGATATTTCCTTAAGATATATGAGTCTTAGATTTACATATGTAGTATTCCAGGTAAAAACGTCAGTGTTATTATCTTTGATATATCTGTTAAGTGAATATAATTATGAGTCTTAGATTTACATCTATAGTATCCCAGGTAAAAACGTCAGTGTTATTATCTTTGATATATCTGTTAAGTGAATATTAGAGCTTTATATCACGAGTATAATTGCTAGATCTTGTCCTCCATACCTTTCGGCCCAAATTATTGTTGGGATTCAAACCATCTTGGATTGACTTAGTGGTCAATAAGAGTCGTGTAAATAATAAAGAGCATAGACAAAATGAATTTAAGTCAAGATGATCATGTACTTAAGATTTATTATCTTAGGATCAAATGGTTGTAACCGGGGCGTGTGCAAGCCGATCCAAACACTCATGGATGTTATAAATATGTGTGTATGTCTATATATGTATATATGCAATCTTTTTTTTGGAGGAAGGCATTTACACACACCTAACGTCAGCCATGGTGTGTTCCTTCATATGGGTATTCATCTTGGCTGTCATGATCCCCATTTTGTCATCTTCTTTTCGCTTTGGTACGTTAGGAATAAAGACAACCATCAGGTTTTGGTTTGGATTTGTTATTGTTTTCCAGCTCTTTTCCAAATAAACTTATCAAATTCTTAAACATATATTTGCAGTGATTAGTTAGTAAATCTTCTTTTTTGTTGTTATTTAATCATCAAATTGATTTAGTTCATGTCCAACAATGAATTCATTGACATAATCATCATGGAAAATATGTAATTTGCATCCTGTCCTCTTGTTTTCTGTTGAATAGCAAAAGAATATCATCCCTTCAGCTAGCTGCTGTCTTTTGTTCTCTTATAGTAAATGAGACTCTCTGTATGGTAACAAAAAGCATATTGCTTTCTCCATTATATATAAAGTTCATCTCTAGCTGCTAGAAGAACTGTATTTACATAGGTAAATAATTAACACTTTGTGGTAATTTCCTCACTCTTTATGTGCATCAGTAGAAGCAATATGTGGTAAGAAATTGATTCTATTGAAGTGTGGATTAGGTTCTTTCCTTCAAAGGGATTCTAGTTGTCTGTTCAAGCAATCTATATAGCTCTACTTTTTGCAATGCTGTGATCATAATTGTGTTTATCCAATCTATCTGTATAATCACTTACTTCAATTTTCTGTTGTAATCCTGCTTTTCCAGCTAAGGCAGATCCCAGGAATTATGACCTCAATAGATGCTTTTTTCACCATTGGCGTTTACCATGTCGAAGGACGAACGTATTAGTACATTACTGCGGTAAATTTCTTTTTCTTTAGCTATGAAATCCTGAGTGTTTCGTTAGAAGTTTTATTCCTGTAGTATGAGGAAACCATATGCTAGTTTCTTTTTGAAAACAGAGGAAACTTTCTGCTGCTCGTGTTTTTGTTTTCTTTACTCGTTTGATTTTACTAATCTAATTCTAAGAAAATTCTGAGAAAATGGGAGGATTTCACCCGGAGCTGGTTGCTTCCTCTTGGTATCAATTCTAAAGATAGGTTGATATTAGTTTCATCACATTTTTGTATCAATGTGGTAATCAGTTCGACTCGGCCGGGTTTGGAGGTTTAATCAAAAGCAAAACCAATTGAATCTAGAGAAGTATTAAGTCGAGAATCTCTCATTACCCG

mRNA sequence

GAGGTAAATTTGTAAAATCCTCGATTTCGGTTTTGTATTGTTCATTCCTTCGGTCTCCTCACCGATCTTTCTCCGGCGAAAATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTGTATTGGATTTATAGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTCTAAGGCAGATCCCAGGAATTATGACCTCAATAGATGCTTTTTTCACCATTGGCGTTTACCATGTCGAAGGACGAACGTATTAGTACATTACTGCGGTAAATTTCTTTTTCTTTAGCTATGAAATCCTGAGTGTTTCGTTAGAAGTTTTATTCCTGTAGTATGAGGAAACCATATGCTAGTTTCTTTTTGAAAACAGAGGAAACTTTCTGCTGCTCGTGTTTTTGTTTTCTTTACTCGTTTGATTTTACTAATCTAATTCTAAGAAAATTCTGAGAAAATGGGAGGATTTCACCCGGAGCTGGTTGCTTCCTCTTGGTATCAATTCTAAAGATAGGTTGATATTAGTTTCATCACATTTTTGTATCAATGTGGTAATCAGTTCGACTCGGCCGGGTTTGGAGGTTTAATCAAAAGCAAAACCAATTGAATCTAGAGAAGTATTAAGTCGAGAATCTCTCATTACCCG

Coding sequence (CDS)

ATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTGTATTGGATTTATAGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGA

Protein sequence

MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH

Homology

[Close]

BLAST of Carg03965 vs. NCBI nr
Match: PON94578.1 (Transmembrane protein [Trema orientalis])

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-13
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+A+PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg03965 vs. NCBI nr
Match: EYU22029.1 (hypothetical protein MIMGU_mgv11b017472mg [Erythranthe guttata])

HSP 1 Score: 81.6 bits (200), Expect = 8.2e-13
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MAN Q++SI PWFLE +PL++V LI AHV ALVYWIYRLAT+KQP RTK H
Sbjct: 1  MANPQQASIRPWFLELVPLLVVFLIIAHVLALVYWIYRLATEKQPQRTKRH 51

[Close]

BLAST of Carg03965 vs. NCBI nr
Match: PON73170.1 (Transmembrane protein [Parasponia andersonii])

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+ +PL++VLLIA HVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDVVPLIVVLLIAVHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg03965 vs. NCBI nr
Match: ESR63474.1 (hypothetical protein CICLE_v10010135mg [Citrus clementina] >ESR63475.1 hypothetical protein CICLE_v10010135mg [Citrus clementina])

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ  ++ PWFL+ +PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 50

[Close]

BLAST of Carg03965 vs. NCBI nr
Match: KDO67367.1 (hypothetical protein CISIN_1g044409mg [Citrus sinensis])

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
           MANEQ  ++ PWFL+ +PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 100 MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 149

[Close]

BLAST of Carg03965 vs. TAIR10
Match: AT5G10745.1 (unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 8.8e-09
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQK--QPPRTKTH 52
          MA EQ   + PWFL+ +P ++VLL AAHV AL YWIYRLAT +  Q  R K H
Sbjct: 1  MAKEQH--LRPWFLDLVPALVVLLAAAHVIALGYWIYRLATDRRAQSQRGKFH 51

[Close]

BLAST of Carg03965 vs. TAIR10
Match: AT5G24980.1 (unknown protein)

HSP 1 Score: 43.5 bits (101), Expect = 4.5e-05
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 14 LEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTK 50
          ++ +P ++V L A HV ALVYWIYRLA+ + P R K
Sbjct: 5  VDLVPAMVVFLAAVHVIALVYWIYRLASDRPPQRKK 40

[Close]

BLAST of Carg03965 vs. TrEMBL
Match: tr|A0A2P5F9W8|A0A2P5F9W8_9ROSA (Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_096130 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-13
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+A+PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg03965 vs. TrEMBL
Match: tr|A0A2N9FKX1|A0A2N9FKX1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15441 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-13
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1  MANEQR-SSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ+ SS+ PWFL+ +PL++V+LIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQQSSSLRPWFLDVVPLMVVVLIAAHVFALVYWIYRLATEKQPQRRKAH 52

[Close]

BLAST of Carg03965 vs. TrEMBL
Match: tr|A0A022Q329|A0A022Q329_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv11b017472mg PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-13
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MAN Q++SI PWFLE +PL++V LI AHV ALVYWIYRLAT+KQP RTK H
Sbjct: 1  MANPQQASIRPWFLELVPLLVVFLIIAHVLALVYWIYRLATEKQPQRTKRH 51

[Close]

BLAST of Carg03965 vs. TrEMBL
Match: tr|A0A2P5DIT2|A0A2P5DIT2_PARAD (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+ +PL++VLLIA HVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDVVPLIVVLLIAVHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg03965 vs. TrEMBL
Match: tr|V4UGZ6|V4UGZ6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010135mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ  ++ PWFL+ +PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 50

The following BLAST results are available for this feature:

BLAST of Carg03965 vs. NCBI nr


Match Name	E-value	Identity	Description
PON94578.1	4.8e-13	74.51	Transmembrane protein [Trema orientalis]	[more]
EYU22029.1	8.2e-13	72.55	hypothetical protein MIMGU_mgv11b017472mg [Erythranthe guttata]	[more]
PON73170.1	2.4e-12	70.59	Transmembrane protein [Parasponia andersonii]	[more]
ESR63474.1	4.1e-12	72.55	hypothetical protein CICLE_v10010135mg [Citrus clementina] >ESR63475.1 hypotheti...	[more]
KDO67367.1	4.1e-12	72.55	hypothetical protein CISIN_1g044409mg [Citrus sinensis]	[more]

BLAST of Carg03965 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10745.1	8.8e-09	56.60	unknown protein	[more]
AT5G24980.1	4.5e-05	52.78	unknown protein	[more]

BLAST of Carg03965 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03965 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5F9W8\|A0A2P5F9W8_9ROSA	3.2e-13	74.51	Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_096130 PE=4 SV=...	[more]
tr\|A0A2N9FKX1\|A0A2N9FKX1_FAGSY	5.5e-13	73.08	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15441 PE=4 SV=1	[more]
tr\|A0A022Q329\|A0A022Q329_ERYGU	5.5e-13	72.55	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv11b017472mg P...	[more]
tr\|A0A2P5DIT2\|A0A2P5DIT2_PARAD	1.6e-12	70.59	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4...	[more]
tr\|V4UGZ6\|V4UGZ6_9ROSI	2.7e-12	72.55	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010135mg PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03965-RA	Carg03965-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35755	FAMILY NOT NAMED	coord: 1..50

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03965	Cla022376	Watermelon (97103) v1	carwmB0978
Carg03965	Csa4G651730	Cucumber (Chinese Long) v2	carcuB0994
Carg03965	MELO3C016940	Melon (DHL92) v3.5.1	carmeB0959
Carg03965	ClCG08G013840	Watermelon (Charleston Gray)	carwcgB0958
Carg03965	Cucsa.271300	Cucumber (Gy14) v1	carcgyB1095
Carg03965	CmaCh12G003740	Cucurbita maxima (Rimu)	carcmaB1349
Carg03965	CmaCh05G003390	Cucurbita maxima (Rimu)	carcmaB1357
Carg03965	CmoCh12G003270	Cucurbita moschata (Rifu)	carcmoB1310
Carg03965	Lsi08G012640	Bottle gourd (USVL1VR-Ls)	carlsiB898
Carg03965	Cp4.1LG02g05600	Cucurbita pepo (Zucchini)	carcpeB1364
Carg03965	Cp4.1LG11g02820	Cucurbita pepo (Zucchini)	carcpeB1352
Carg03965	Cp4.1LG07g03390	Cucurbita pepo (Zucchini)	carcpeB1368
Carg03965	Cp4.1LG06g02800	Cucurbita pepo (Zucchini)	carcpeB1367

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03965	Carg09375	Silver-seed gourd	carcarB168

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03965	Silver-seed gourd	carcarB558
Carg03965	Cucumber (Gy14) v2	carcgybB0960
Carg03965	Cucumber (Gy14) v1	carcgyB1091
Carg03965	Cucurbita moschata (Rifu)	carcmoB1319
Carg03965	Wild cucumber (PI 183967)	carcpiB1010
Carg03965	Cucumber (Chinese Long) v2	carcuB0987
Carg03965	Cucumber (Chinese Long) v3	carcucB1015
Carg03965	Melon (DHL92) v3.5.1	carmeB0955
Carg03965	Melon (DHL92) v3.6.1	carmedB0961
Carg03965	Watermelon (97103) v2	carwmbB1034
Carg03965	Wax gourd	carwgoB1142