ClCG08G013840 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G013840
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr08 : 26666673 .. 26667319 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAATAAGCTTTCTTCCACGGTACGACGGACCCCAAATTTTCCCTTCACCGCTCCGACGCTAGTTCGACCGTGTAGAACTGTAAATTTGTAAACCCTCGATTAAGAGTTTATCTTGTTCATTCTTCAATCTCACCATCTATTTTTTCTCCGGCGAAAATGGCGAACGAGCAACGGCAATCGACAGGGCCCTGGACCCTCGAAGCAATACCTTTAATTATTGTTCTTCTCATAGCAACTCACGTCTTCGCTTTGGTACTCCCTAACTCCAATTTTTGTTCACTTTTGGCATTTCTATCCAAACTCTACTCTCATGTTTGCTCATTTCCACTTAATTTCTGTAGGTATATTGGATTTATAAGTTAGCCACCCAAAAACAACCTCCGAGGAGGAAGGCACACTGAGTTACTGAATGATTCGTTCCTGAAAGAAACTTTAGTGAAACCCTAATACGTTAATTGTTGTGTCACTGATGTTGAGGAGGCGGTCGAAAAAATCCATATAACGATGTTTCTTTGTAAGTATCTGTCAGTGTGTATTCTCAGAATCTCAGTTTGGTATTGTAAGAACGTGGACATGTCTCTTGCAGATCAAATTTGATTTGTATGGTTTTCAATTCATAAATTTGAAGGTGATTCATTCATATA

mRNA sequence

GTAAAATAAGCTTTCTTCCACGGTACGACGGACCCCAAATTTTCCCTTCACCGCTCCGACGCTAGTTCGACCGTGTAGAACTGTAAATTTGTAAACCCTCGATTAAGAGTTTATCTTGTTCATTCTTCAATCTCACCATCTATTTTTTCTCCGGCGAAAATGGCGAACGAGCAACGGCAATCGACAGGGCCCTGGACCCTCGAAGCAATACCTTTAATTATTGTTCTTCTCATAGCAACTCACGTCTTCGCTTTGGTATATTGGATTTATAAGTTAGCCACCCAAAAACAACCTCCGAGGAGGAAGGCACACTGAGTTACTGAATGATTCGTTCCTGAAAGAAACTTTAGTGAAACCCTAATACGTTAATTGTTGTGTCACTGATGTTGAGGAGGCGGTCGAAAAAATCCATATAACGATGTTTCTTTGTAAGTATCTGTCAGTGTGTATTCTCAGAATCTCAGTTTGGTATTGTAAGAACGTGGACATGTCTCTTGCAGATCAAATTTGATTTGTATGGTTTTCAATTCATAAATTTGAAGGTGATTCATTCATATA

Coding sequence (CDS)

ATGGCGAACGAGCAACGGCAATCGACAGGGCCCTGGACCCTCGAAGCAATACCTTTAATTATTGTTCTTCTCATAGCAACTCACGTCTTCGCTTTGGTATATTGGATTTATAAGTTAGCCACCCAAAAACAACCTCCGAGGAGGAAGGCACACTGA

Protein sequence

MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQKQPPRRKAH

Homology

[Close]

BLAST of ClCG08G013840 vs. TrEMBL
Match: K4CIE6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-12
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 1  MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQKQPPRRKAH 52
          MAN+Q++S+ PW LEA+PL++V+LIA HV ALVYWIY++AT+KQP R K H
Sbjct: 1  MANQQQESSRPWILEALPLLVVILIAAHVLALVYWIYRVATEKQPQRSKKH 51

[Close]

BLAST of ClCG08G013840 vs. TrEMBL
Match: V4UGZ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010135mg PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.3e-12
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 1  MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQKQPPRRKAH 52
          MANEQ  +  PW L+ +PLI+VLLIA HVFALVYWIY+LAT+KQP RRKAH
Sbjct: 1  MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 50

[Close]

BLAST of ClCG08G013840 vs. TrEMBL
Match: A0A067FV99_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044409mg PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.3e-12
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 1   MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQKQPPRRKAH 52
           MANEQ  +  PW L+ +PLI+VLLIA HVFALVYWIY+LAT+KQP RRKAH
Sbjct: 100 MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 149

[Close]

BLAST of ClCG08G013840 vs. TrEMBL
Match: M1CHM3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402026306 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.6e-12
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 1  MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQKQPPRRKAH 52
          MAN+Q+ S+ PW LEA+PL++V+LIA HV ALVYWIY++AT+KQP R K H
Sbjct: 1  MANQQQGSSRPWILEALPLLVVILIAAHVLALVYWIYRVATEKQPQRSKKH 51

[Close]

BLAST of ClCG08G013840 vs. TrEMBL
Match: A0A059CW86_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C04026 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-11
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 1   MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQKQPPRRKAH 52
           MAN+Q  S  PW ++A P ++VLLIA HVFALVYWIY+LAT+KQP RRKAH
Sbjct: 54  MANQQTPSR-PWIMDAAPYLVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 103

[Close]

BLAST of ClCG08G013840 vs. TAIR10
Match: AT5G10745.1 (AT5G10745.1 unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 2.8e-07
Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 1  MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQK--QPPRRKAH 52
          MA EQ     PW L+ +P ++VLL A HV AL YWIY+LAT +  Q  R K H
Sbjct: 1  MAKEQHLR--PWFLDLVPALVVLLAAAHVIALGYWIYRLATDRRAQSQRGKFH 51

[Close]

BLAST of ClCG08G013840 vs. TAIR10
Match: AT5G24980.1 (AT5G24980.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 4.1e-06
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 1


Query: 13 TLEAIPLIIVLLIATHVFALVYWIYKLATQKQPPRRK 50
          +++ +P ++V L A HV ALVYWIY+LA+ + P R+K
Sbjct: 4  SVDLVPAMVVFLAAVHVIALVYWIYRLASDRPPQRKK 40

[Close]

BLAST of ClCG08G013840 vs. NCBI nr
Match: gi|641848490|gb|KDO67367.1| (hypothetical protein CISIN_1g044409mg [Citrus sinensis])

HSP 1 Score: 78.2 bits (191), Expect = 4.7e-12
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 1   MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQKQPPRRKAH 52
           MANEQ  +  PW L+ +PLI+VLLIA HVFALVYWIY+LAT+KQP RRKAH
Sbjct: 100 MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 149

[Close]

BLAST of ClCG08G013840 vs. NCBI nr
Match: gi|567916456|ref|XP_006450234.1| (hypothetical protein CICLE_v10010135mg [Citrus clementina])

HSP 1 Score: 78.2 bits (191), Expect = 4.7e-12
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 1  MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQKQPPRRKAH 52
          MANEQ  +  PW L+ +PLI+VLLIA HVFALVYWIY+LAT+KQP RRKAH
Sbjct: 1  MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 50

[Close]

BLAST of ClCG08G013840 vs. NCBI nr
Match: gi|629117967|gb|KCW82642.1| (hypothetical protein EUGRSUZ_C04026, partial [Eucalyptus grandis])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-11
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 1   MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQKQPPRRKAH 52
           MAN+Q  S  PW ++A P ++VLLIA HVFALVYWIY+LAT+KQP RRKAH
Sbjct: 54  MANQQTPSR-PWIMDAAPYLVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 103

[Close]

BLAST of ClCG08G013840 vs. NCBI nr
Match: gi|720001529|ref|XP_010256389.1| (PREDICTED: uncharacterized protein LOC104596795 [Nelumbo nucifera])

HSP 1 Score: 74.3 bits (181), Expect = 6.8e-11
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1  MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQKQPPRRKAH 52
          MA E +  + PW LEA+PL +V+LI  HV ALVYWIY+LAT++ PPRRKAH
Sbjct: 1  MAKEHQIISRPWILEAVPLFVVVLITAHVLALVYWIYRLATERPPPRRKAH 51

[Close]

BLAST of ClCG08G013840 vs. NCBI nr
Match: gi|593269564|ref|XP_007136959.1| (hypothetical protein PHAVU_009G088400g [Phaseolus vulgaris])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1


Query: 1  MANEQRQSTGPWTLEAIPLIIVLLIATHVFALVYWIYKLATQKQPP-RRKAH 52
          MA EQ + T PW  +A+P+++V+LIA HV A+VYWIY+LATQKQP  RRKAH
Sbjct: 1  MAYEQHKPTRPWIQDALPMLVVILIAAHVLAMVYWIYRLATQKQPQRRRKAH 52

The following BLAST results are available for this feature:

BLAST of ClCG08G013840 vs. TrEMBL


Match Name	E-value	Identity	Description
K4CIE6_SOLLC	1.9e-12	64.71	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
V4UGZ6_9ROSI	3.3e-12	72.55	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010135mg PE=4 SV=1	[more]
A0A067FV99_CITSI	3.3e-12	72.55	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044409mg PE=4 SV=1	[more]
M1CHM3_SOLTU	5.6e-12	64.71	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402026306 PE=4 SV=1	[more]
A0A059CW86_EUCGR	1.6e-11	68.63	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C04026 PE=4 ...	[more]

BLAST of ClCG08G013840 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10745.1	2.8e-07	50.94	unknown protein	[more]
AT5G24980.1	4.1e-06	48.65	unknown protein	[more]

BLAST of ClCG08G013840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|641848490\|gb\|KDO67367.1\|	4.7e-12	72.55	hypothetical protein CISIN_1g044409mg [Citrus sinensis]	[more]
gi\|567916456\|ref\|XP_006450234.1\|	4.7e-12	72.55	hypothetical protein CICLE_v10010135mg [Citrus clementina]	[more]
gi\|629117967\|gb\|KCW82642.1\|	2.3e-11	68.63	hypothetical protein EUGRSUZ_C04026, partial [Eucalyptus grandis]	[more]
gi\|720001529\|ref\|XP_010256389.1\|	6.8e-11	62.75	PREDICTED: uncharacterized protein LOC104596795 [Nelumbo nucifera]	[more]
gi\|593269564\|ref\|XP_007136959.1\|	2.0e-10	63.46	hypothetical protein PHAVU_009G088400g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G013840.1	ClCG08G013840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35755	FAMILY NOT NAMED	coord: 1..51 score: 2.9
None	No IPR available	PANTHER	PTHR35755:SF1	SUBFAMILY NOT NAMED	coord: 1..51 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G013840	Csa4G651730	Cucumber (Chinese Long) v2	cuwcgB334
ClCG08G013840	MELO3C016940	Melon (DHL92) v3.5.1	mewcgB501
ClCG08G013840	Cla022376	Watermelon (97103) v1	wcgwmB400
ClCG08G013840	Cla97C08G157300	Watermelon (97103) v2	wcgwmbB336
ClCG08G013840	CSPI04G26000	Wild cucumber (PI 183967)	cpiwcgB352
ClCG08G013840	Cucsa.271300	Cucumber (Gy14) v1	cgywcgB473
ClCG08G013840	CmoCh01G017310	Cucurbita moschata (Rifu)	cmowcgB433
ClCG08G013840	Lsi08G012640	Bottle gourd (USVL1VR-Ls)	lsiwcgB438
ClCG08G013840	Cp4.1LG06g02800	Cucurbita pepo (Zucchini)	cpewcgB713
ClCG08G013840	CsGy4G024320	Cucumber (Gy14) v2	cgybwcgB310
ClCG08G013840	Carg09375	Silver-seed gourd	carwcgB0137
ClCG08G013840	Carg03965	Silver-seed gourd	carwcgB0958

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
ClCG08G013840	ClCG05G016050	Watermelon (Charleston Gray)	wcgwcgB170

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G013840	Melon (DHL92) v3.6.1	medwcgB292
ClCG08G013840	Cucumber (Chinese Long) v3	cucwcgB173
ClCG08G013840	Cucumber (Chinese Long) v3	cucwcgB352
ClCG08G013840	Wax gourd	wcgwgoB613
ClCG08G013840	Wax gourd	wcgwgoB651
ClCG08G013840	Cucumber (Gy14) v1	cgywcgB282
ClCG08G013840	Cucurbita maxima (Rimu)	cmawcgB169
ClCG08G013840	Cucurbita maxima (Rimu)	cmawcgB712
ClCG08G013840	Cucurbita moschata (Rifu)	cmowcgB161
ClCG08G013840	Cucurbita moschata (Rifu)	cmowcgB716
ClCG08G013840	Wild cucumber (PI 183967)	cpiwcgB168
ClCG08G013840	Cucumber (Chinese Long) v2	cuwcgB165
ClCG08G013840	Melon (DHL92) v3.5.1	mewcgB299
ClCG08G013840	Watermelon (97103) v1	wcgwmB415
ClCG08G013840	Cucurbita pepo (Zucchini)	cpewcgB125
ClCG08G013840	Cucurbita pepo (Zucchini)	cpewcgB748
ClCG08G013840	Cucumber (Gy14) v2	cgybwcgB152