Carg09375-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09375-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_018 : 960740 .. 962094 (-)
Sequence length	1264

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACCACCGGTAGGATTCTCTAGTTCGACTGAGTAGGGCTGTAAATTTGTAAACCCTCGATTTAGGGTTTATCTTGTTCATTCTTCAATCTCTTCATCTGTCTTTCTCGGGTGAATATGGCGAACGAGAAACGGTCATCTACAGGGCCATGGATCCTCGAAGCAATGCCTTTCATCGTTGTTCTTCTCATAGCAGCTCATGTCTTTGCTTTGGTACTCTCTAACTCCGATTTTTGTTTCGTTTTTTTGCATTGTATTCAAGCTCTGTACTCTGTTGTTTCTCATTTCCTCTTGATTTCTGTAGGTATATTGGATTTATAAGTTGGCAGCCCAAAAACAACCTCCGAGGAGGAAGGCACACTGAGTTACTGTATGATTCGTTCCTGAAAGAAACTTCAGTGAAACCGAATTCGTTAATTATTGCGTATCTGATGTTGAGGAGGCGGTCACAAAAGCCATGTAACGATGTTTCTCTGTAAGTATCCATCAGTATGTACTCTCAGAATCTCAGTTTCGTATTGTAAGAATATGGAAATGTTTCTTACAAACCAAATTTGATTTGTATGGTTTTTCAATTCATAGAATTATAAGGCGATCCGTTGATATATCTGTAATCTTGTTTGGTTTTCATTATCTTGAAAAGCTGGCTTATTCGTTTATTAGCATGCTTCCATCACGATAGGTGAGGAATCACCAGGTCAAGAAATGATCGAATACATTTTATTCTGAGTCCATTATTGAAGAGTCTGTTTTCGGTACATATAAACTACAACTTTAACATTCGAAACTTTTTAAGGAAAAGATAAAAGAGTTGGGGAAAGTATCCTTGCTGTAGATTTCTCCATTAAGAGTAACTGGCTCTGCTTCTTGTTCCACGAAGAAATGGATTGCTGCTGCTGCTTCTTGTGGAGTGAGAGCTCCATTAATTCCTAGCAGAATTAGTGAATAGTGACAAAACTTTTCTAACTAGGCAAATTTTGCTTGAACTCGTGCAGCACTTTTAATATCATTGTGTGAGATCCCACGTCGATTCGAGAGGAGAACGAAACATTCTTTATAAGAGTGTGGAAATCTCTCTCTAACAGACGTGTCTTAAAAACTTTGAGGAGAAGTTCGAAGGGAAAAGCTCAAAAAGGACAATATCTGCTAGCAATGGACTTGGGTTATTACACATTGTTTATTACGTGCTTTTTATATATATTTATAAAAAGAATCTCCTAGTTTTGGTAATGGTTTTAGCTGGACTCTTGAACATACATTAGTGGAAGTACCTTTTTCCAGCTCATTTTCTGTTGAAGATGAATGGGCCATCAAATCAACTAATATAATGTCTAAAGTGTGTTTGTAGTAATTT

mRNA sequence

CTTCACCACCGGTAGGATTCTCTAGTTCGACTGAGTAGGGCTGTAAATTTGTAAACCCTCGATTTAGGGTTTATCTTGTTCATTCTTCAATCTCTTCATCTGTCTTTCTCGGGTGAATATGGCGAACGAGAAACGGTCATCTACAGGGCCATGGATCCTCGAAGCAATGCCTTTCATCGTTGTTCTTCTCATAGCAGCTCATGTCTTTGCTTTGGTATATTGGATTTATAAGTTGGCAGCCCAAAAACAACCTCCGAGGAGGAAGGCACACTGAGTTACTGTATGATTCGTTCCTGAAAGAAACTTCAGTGAAACCGAATTCGTTAATTATTGCGTATCTGATGTTGAGGAGGCGGTCACAAAAGCCATGTAACGATGTTTCTCTGTAAGTATCCATCAGTATGTACTCTCAGAATCTCAGTTTCGTATTGTAAGAATATGGAAATGTTTCTTACAAACCAAATTTGATTTGTATGGTTTTTCAATTCATAGAATTATAAGGCGATCCGTTGATATATCTGTAATCTTGTTTGGTTTTCATTATCTTGAAAAGCTGGCTTATTCGTTTATTAGCATGCTTCCATCACGATAGGTGAGGAATCACCAGGTCAAGAAATGATCGAATACATTTTATTCTGAGTCCATTATTGAAGAGTCTGTTTTCGGTACATATAAACTACAACTTTAACATTCGAAACTTTTTAAGGAAAAGATAAAAGAGTTGGGGAAAGTATCCTTGCTGTAGATTTCTCCATTAAGAGTAACTGGCTCTGCTTCTTGTTCCACGAAGAAATGGATTGCTGCTGCTGCTTCTTGTGGAGTGAGAGCTCCATTAATTCCTAGCAGAATTAGTGAATAGTGACAAAACTTTTCTAACTAGGCAAATTTTGCTTGAACTCGTGCAGCACTTTTAATATCATTGTGTGAGATCCCACGTCGATTCGAGAGGAGAACGAAACATTCTTTATAAGAGTGTGGAAATCTCTCTCTAACAGACGTGTCTTAAAAACTTTGAGGAGAAGTTCGAAGGGAAAAGCTCAAAAAGGACAATATCTGCTAGCAATGGACTTGGGTTATTACACATTGTTTATTACGTGCTTTTTATATATATTTATAAAAAGAATCTCCTAGTTTTGGTAATGGTTTTAGCTGGACTCTTGAACATACATTAGTGGAAGTACCTTTTTCCAGCTCATTTTCTGTTGAAGATGAATGGGCCATCAAATCAACTAATATAATGTCTAAAGTGTGTTTGTAGTAATTT

Coding sequence (CDS)

ATGGCGAACGAGAAACGGTCATCTACAGGGCCATGGATCCTCGAAGCAATGCCTTTCATCGTTGTTCTTCTCATAGCAGCTCATGTCTTTGCTTTGGTATATTGGATTTATAAGTTGGCAGCCCAAAAACAACCTCCGAGGAGGAAGGCACACTGA

Protein sequence

MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH

Homology

[Close]

BLAST of Carg09375-RA vs. NCBI nr
Match: PON94578.1 (Transmembrane protein [Trema orientalis])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE+ S   PW+L+A+P +VVLLIAAHVFALVYWIY+LA +KQP RRKAH
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg09375-RA vs. NCBI nr
Match: PON73170.1 (Transmembrane protein [Parasponia andersonii])

HSP 1 Score: 78.6 bits (192), Expect = 7.0e-12
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE+ S   PW+L+ +P IVVLLIA HVFALVYWIY+LA +KQP RRKAH
Sbjct: 1  MANEQLSPARPWLLDVVPLIVVLLIAVHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg09375-RA vs. NCBI nr
Match: KCW82642.1 (hypothetical protein EUGRSUZ_C04026, partial [Eucalyptus grandis])

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
           MAN++  S  PWI++A P++VVLLIAAHVFALVYWIY+LA +KQP RRKAH
Sbjct: 54  MANQQTPSR-PWIMDAAPYLVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 103

[Close]

BLAST of Carg09375-RA vs. NCBI nr
Match: XP_018833637.1 (PREDICTED: uncharacterized protein LOC109000993 [Juglans regia] >XP_018833638.1 PREDICTED: uncharacterized protein LOC109000993 [Juglans regia] >XP_018833639.1 PREDICTED: uncharacterized protein LOC109000993 [Juglans regia])

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MANEKRSSTG-PWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MAN+  SS+  PW+LEA+P +VV+LIAAHV ALVYWIY+LA++KQP RRKAH
Sbjct: 1  MANQHHSSSSRPWLLEAVPLMVVVLIAAHVLALVYWIYRLASEKQPQRRKAH 52

[Close]

BLAST of Carg09375-RA vs. NCBI nr
Match: XP_023535177.1 (uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535179.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MAN+++  + PWIL+A+PFIVV+LIAAHV ALVYWIY+LA   +P RRKAH
Sbjct: 1  MANQQQVDSRPWILDAVPFIVVILIAAHVLALVYWIYRLATDNRPQRRKAH 51

[Close]

BLAST of Carg09375-RA vs. TAIR10
Match: AT5G10745.1 (unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 2.4e-06
Identity = 25/49 (51.02%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 5  KRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQK--QPPRRKAH 52
          K     PW L+ +P +VVLL AAHV AL YWIY+LA  +  Q  R K H
Sbjct: 3  KEQHLRPWFLDLVPALVVLLAAAHVIALGYWIYRLATDRRAQSQRGKFH 51

[Close]

BLAST of Carg09375-RA vs. TAIR10
Match: AT5G24980.1 (unknown protein)

HSP 1 Score: 42.7 bits (99), Expect = 7.7e-05
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 14 LEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRK 50
          ++ +P +VV L A HV ALVYWIY+LA+ + P R+K
Sbjct: 5  VDLVPAMVVFLAAVHVIALVYWIYRLASDRPPQRKK 40

[Close]

BLAST of Carg09375-RA vs. TrEMBL
Match: tr|A0A2P5F9W8|A0A2P5F9W8_9ROSA (Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_096130 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE+ S   PW+L+A+P +VVLLIAAHVFALVYWIY+LA +KQP RRKAH
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg09375-RA vs. TrEMBL
Match: tr|A0A2P5DIT2|A0A2P5DIT2_PARAD (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-12
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE+ S   PW+L+ +P IVVLLIA HVFALVYWIY+LA +KQP RRKAH
Sbjct: 1  MANEQLSPARPWLLDVVPLIVVLLIAVHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of Carg09375-RA vs. TrEMBL
Match: tr|A0A2I4FPQ3|A0A2I4FPQ3_9ROSI (uncharacterized protein LOC109000993 OS=Juglans regia OX=51240 GN=LOC109000993 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-11
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MANEKRSSTG-PWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MAN+  SS+  PW+LEA+P +VV+LIAAHV ALVYWIY+LA++KQP RRKAH
Sbjct: 1  MANQHHSSSSRPWLLEAVPLMVVVLIAAHVLALVYWIYRLASEKQPQRRKAH 52

[Close]

BLAST of Carg09375-RA vs. TrEMBL
Match: tr|A0A2N9FKX1|A0A2N9FKX1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15441 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-11
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MANEKRSST-GPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE++SS+  PW L+ +P +VV+LIAAHVFALVYWIY+LA +KQP RRKAH
Sbjct: 1  MANEQQSSSLRPWFLDVVPLMVVVLIAAHVFALVYWIYRLATEKQPQRRKAH 52

[Close]

BLAST of Carg09375-RA vs. TrEMBL
Match: tr|A0A2U1LN60|A0A2U1LN60_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA415980 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-11
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MANEKR---SSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 52
          MANE++   SS+GPWILE +PFIVV+LIAAHV ALVYWIY++A +K P RRK H
Sbjct: 1  MANEEKQISSSSGPWILELVPFIVVVLIAAHVLALVYWIYRVATEKLPGRRKKH 54

The following BLAST results are available for this feature:

BLAST of Carg09375-RA vs. NCBI nr


Match Name	E-value	Identity	Description
PON94578.1	1.8e-12	72.55	Transmembrane protein [Trema orientalis]	[more]
PON73170.1	7.0e-12	70.59	Transmembrane protein [Parasponia andersonii]	[more]
KCW82642.1	4.5e-11	70.59	hypothetical protein EUGRSUZ_C04026, partial [Eucalyptus grandis]	[more]
XP_018833637.1	4.5e-11	69.23	PREDICTED: uncharacterized protein LOC109000993 [Juglans regia] >XP_018833638.1 ...	[more]
XP_023535177.1	4.5e-11	66.67	uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178....	[more]

BLAST of Carg09375-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10745.1	2.4e-06	51.02	unknown protein	[more]
AT5G24980.1	7.7e-05	52.78	unknown protein	[more]

BLAST of Carg09375-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09375-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5F9W8\|A0A2P5F9W8_9ROSA	1.2e-12	72.55	Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_096130 PE=4 SV=...	[more]
tr\|A0A2P5DIT2\|A0A2P5DIT2_PARAD	4.6e-12	70.59	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4...	[more]
tr\|A0A2I4FPQ3\|A0A2I4FPQ3_9ROSI	3.0e-11	69.23	uncharacterized protein LOC109000993 OS=Juglans regia OX=51240 GN=LOC109000993 P...	[more]
tr\|A0A2N9FKX1\|A0A2N9FKX1_FAGSY	3.0e-11	69.23	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15441 PE=4 SV=1	[more]
tr\|A0A2U1LN60\|A0A2U1LN60_ARTAN	3.0e-11	68.52	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA415980 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg09375	Carg09375	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg09375-RA	Carg09375-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09375-RA.three_prime_UTR.1	Carg09375-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09375-RA.CDS.2	Carg09375-RA.CDS.2	CDS
Carg09375-RA.CDS.1	Carg09375-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09375-RA.five_prime_UTR.1	Carg09375-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09375-RA.exon.2	Carg09375-RA.exon.2	exon
Carg09375-RA.exon.1	Carg09375-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35755	FAMILY NOT NAMED	coord: 1..50