Carg10014 (gene) Silver-seed gourd

Overview
NameCarg10014
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description50S ribosomal protein L35
LocationCucurbita_argyrosperma_scaffold_030 : 973186 .. 975437 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGAGGCTCGTATAGATTGGCAAGAAGGAGAAAGACGAGACGCTTCCAAGCTTCAGGAGCCATGGCATCTGCTTCGGCGACGGCGTCCTTTGGTCTTAGGTTTTCCCCACTGTGCTCTCGCTCATCAGTTCGCGTCTCTCGTAGTTCTGTCCGGCTCCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCCTCCCACAACATTTCCAGGTTTGGAGTCGCTTTACTTCAGAAGCCATTTCACATTGCTCCCAGTTCTCGAATTCATACTCCCTTCACTGTTGTCGCTGCCAAAGGGTACAAAATGAAAACACACAAGGTCTCTATTTCCCTCAATTCTCTGTGTATTTTTGGGATATTTTTGTATGGTTCAATTCTGGTTGGATTCTGATTAATTGAAGTTAATTTCAGTCTTCTAGATAGTCGGATATGTTTATTTTTTGTTTTGATCGAATTTGTATTGAATTTTAAGTACTCCTTACGGTACCCAATTCTAGACACTTGCTGAAGGGGCTAGTGTCATTGTTGAGAATGGCGGGGGAAGAGTCCCACGTCAGCCGTTAATTAAGAGGTTGATCATGGATTTATATGTAAGAAATATATCTATATTGGTATTGAAGCATTATGGGGAAACCAAAAGTAAAGCCACGAGAACTTATACTCAAAGTGGACAATATTATACCATTGTGAAGAGTCATGATTTCCAACATGGTATCAGAGTCACGCCCTTAACTTAGCCATGTCAATAAAATCTTCAAATGTCGAATAAAGAAGTTGCGAGCCTCGAACTTGTAGTCAAAAGTGGCTCAAGTGTCGAACAAATGGTGTATTTTGTTCGAGGGCTCTAGAGAAGGAGTTGAGTCTTGATTAAGGGGAGGTTGTTCGAGAGCTCCATACACTCAGGGGAGGCTCTATGGAGTACATTGTTCGAGAGGAGGATTGTTAGGGAAAAAGTCTTACATCGAGTAATTAAAGGGTTGATCCTGAGTTTATAAGTAGGAATACATCTCTATTGGTATGAGGCATTTTGGGACACTAAAAGCAAAGCTACGAGAGCTCATGCTAAAAGTAGACAATATCATATAATTGTGGAGGGTCGTGTAACCTCCTCTTCTCTTTCTCTTGTATTGTACTGTAATTTTTTTTTTTTTTTTCCTTTTGATTTGATTGTTTGGTGTGACTGGATAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGAAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAATTACGGCTTTCCAAAATGGTACGTCATCTTTACTTGTTTTTATTCTTATGATTCTGTATCTGTAATGCGAAATTCTAAACTTGTACCCTCGAGAGTTTTTCTGGGAGAGAGTTTATATAAATGGATCAAAACTTAGCCAATGCAGCCACCATTTTCAATCTCTATGCGACAAGTTATTTGACAAGAAAATAGCTTTGTTTTTGAATTTTCAGAATGTAGTACACAGCCTAGTTTTTATTGATTCATTGGTTGCGTCTGAGAGCAACAAAGGCAGTTCCTTTAGCCTTTTGTTCAAATTTGATTCGATCTACATTGTTACCAACTGGTCGAATCCTCTGATTTCCCTGTGGGCATATAGATTTATGGTTAATGAACTATTTTACCAACAATATTCATGCCTAAGATTTTGTTATATGAACAAAGTGCCTTTTATAATACCAAAAAAGTGTGGTGGGTTGCTCTTGTTGTGCAAGGAAAATTGGCTAGTTCTCAGCATTTGTATATCTGGTTATGTTACCGAGTGTTTTCTTTGATTGGTTTCCGTCTTAACACAGCACCCAGTGAGCCGAAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAGAGGTCATCACCCCGCCCCACTACACCTGCCTCTACTCACTTCATGTGTAATCAAACGATTTTCAACTTTCCAGAACTCATCAAATGGAAAAATTCGATTGCTTAAAGATCTTATCTCTAATTTATTTCATCAGTTGATAATGGTACGCGTTCTTTTAATTCCCTTCCTCTCTTTCTTTTTGCTAACTTGATAGGCTACAAAGATGGAGCTTTATTTCTTCTATAAATTATGAGGATCTGGGAAGTCTGCCCTGTTTGCTCTGTTTCATCTCATAAACAAAGTAATCATATCTAATTTCTACTTATACAATAAACAAATTTGATTTCTTC

mRNA sequence

TTTGAGGCTCGTATAGATTGGCAAGAAGGAGAAAGACGAGACGCTTCCAAGCTTCAGGAGCCATGGCATCTGCTTCGGCGACGGCGTCCTTTGGTCTTAGGTTTTCCCCACTGTGCTCTCGCTCATCAGTTCGCGTCTCTCGTAGTTCTGTCCGGCTCCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCCTCCCACAACATTTCCAGGTTTGGAGTCGCTTTACTTCAGAAGCCATTTCACATTGCTCCCAGTTCTCGAATTCATACTCCCTTCACTGTTGTCGCTGCCAAAGGGTACAAAATGAAAACACACAAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGAAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGAAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAGAGGTCATCACCCCGCCCCACTACACCTGCCTCTACTCACTTCATGTGTAATCAAACGATTTTCAACTTTCCAGAACTCATCAAATGGAAAAATTCGATTGCTTAAAGATCTTATCTCTAATTTATTTCATCAGTTGATAATGGTACGCGTTCTTTTAATTCCCTTCCTCTCTTTCTTTTTGCTAACTTGATAGGCTACAAAGATGGAGCTTTATTTCTTCTATAAATTATGAGGATCTGGGAAGTCTGCCCTGTTTGCTCTGTTTCATCTCATAAACAAAGTAATCATATCTAATTTCTACTTATACAATAAACAAATTTGATTTCTTC

Coding sequence (CDS)

ATGGCATCTGCTTCGGCGACGGCGTCCTTTGGTCTTAGGTTTTCCCCACTGTGCTCTCGCTCATCAGTTCGCGTCTCTCGTAGTTCTGTCCGGCTCCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCCTCCCACAACATTTCCAGGTTTGGAGTCGCTTTACTTCAGAAGCCATTTCACATTGCTCCCAGTTCTCGAATTCATACTCCCTTCACTGTTGTCGCTGCCAAAGGGTACAAAATGAAAACACACAAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGAAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGAAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAG

Protein sequence

MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Homology
[Close]
BLAST of Carg10014 vs. NCBI nr
Match: XP_022922051.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 276.9 bits (707), Expect = 4.0e-71
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASASATASFGLRF PLCSRSSV VSR  VRLPSSNKAYSLRLSSSHNISRFGVALLQKP
Sbjct: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Carg10014 vs. NCBI nr
Match: XP_022988597.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 276.2 bits (705), Expect = 6.7e-71
Identity = 145/151 (96.03%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASASA+ SFGLRFSPLCSRSSVRVSR  VRLPSSNKAYSLRLSSSHN+S FGVALLQKP
Sbjct: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Carg10014 vs. NCBI nr
Match: XP_023516182.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.0 bits (702), Expect = 1.5e-70
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNKAYSLRLSSSHNISRFGVAL+QKP
Sbjct: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HIAPSSRI TPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Carg10014 vs. NCBI nr
Match: XP_022135558.1 (50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 245.7 bits (626), Expect = 9.8e-62
Identity = 134/152 (88.16%), Postives = 137/152 (90.13%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSS-NKAYSLRLSSSHNISRFGVALLQK 60
           MASAS T SFGLRFSPLCSR SVRVS   VRL SS NK  SLRL SS NIS FGVALLQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152

[Close]
BLAST of Carg10014 vs. NCBI nr
Match: XP_008443834.1 (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 2.9e-58
Identity = 124/151 (82.12%), Postives = 132/151 (87.42%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASAS   SFGLRFSPLCSR S RVS   V L S NK  SL+LSSSHNIS FG+  LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HI+P+S+IHTPFTV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR+
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of Carg10014 vs. TAIR10
Match: AT2G24090.1 (Ribosomal protein L35)

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-33
Identity = 93/151 (61.59%), Postives = 105/151 (69.54%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MAS S  AS  + F      SS +VS        S+  ++  LSSSH+IS     L  K 
Sbjct: 1   MASLS-MASVNVSFCHPLRSSSPKVSL------RSSVHFATSLSSSHSISGLRAVLPLKI 60

Query: 61  FHIA-PSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
             +A P+S+    FTV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KR
Sbjct: 61  STVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           KLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 KLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]
BLAST of Carg10014 vs. Swiss-Prot
Match: sp|Q8VZ55|RK35_ARATH (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL35 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.5e-32
Identity = 93/151 (61.59%), Postives = 105/151 (69.54%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MAS S  AS  + F      SS +VS        S+  ++  LSSSH+IS     L  K 
Sbjct: 1   MASLS-MASVNVSFCHPLRSSSPKVSL------RSSVHFATSLSSSHSISGLRAVLPLKI 60

Query: 61  FHIA-PSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
             +A P+S+    FTV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KR
Sbjct: 61  STVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           KLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 KLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]
BLAST of Carg10014 vs. Swiss-Prot
Match: sp|P23326|RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.6e-31
Identity = 96/159 (60.38%), Postives = 105/159 (66.04%), Query Frame = 0 

Query: 1   MASASATASF---GLRFSPLCSRSSVRVSRXXVRLPSSNKAY--SLRLSSSHNISRFGV- 60
           MASA+AT SF    L  SP  +R S   +   + L   NK    +L LSSS +IS   V 
Sbjct: 3   MASATATLSFKTPSLSLSPPSTRCS---AAQGISLTHFNKQLKSTLNLSSSSSISSSKVQ 62

Query: 61  --ALLQKPFHIAPS--SRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQH 120
              L  K      S  S     FTV AAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQH
Sbjct: 63  PIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQH 122

Query: 121 LLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ 150
           LL KKNTKRK RLSK+  V RSDYDNVIGALPYLKVNR+
Sbjct: 123 LLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158

[Close]
BLAST of Carg10014 vs. Swiss-Prot
Match: sp|Q3M7I2|RL35_ANAVT (50S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of Carg10014 vs. Swiss-Prot
Match: sp|Q8YRL9|RL35_NOSS1 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of Carg10014 vs. Swiss-Prot
Match: sp|B2J0D1|RL35_NOSP7 (50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpmI PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-09
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ +K  +SK   V   D  NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAGKSHLLEHKSSDKKRSMSKTTLVHERDELNVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of Carg10014 vs. TrEMBL
Match: tr|A0A1S3B9R8|A0A1S3B9R8_CUCME (50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.9e-58
Identity = 124/151 (82.12%), Postives = 132/151 (87.42%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASAS   SFGLRFSPLCSR S RVS   V L S NK  SL+LSSSHNIS FG+  LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HI+P+S+IHTPFTV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR+
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of Carg10014 vs. TrEMBL
Match: tr|A0A0A0LYX0|A0A0A0LYX0_CUCSA (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 4.1e-56
Identity = 122/151 (80.79%), Postives = 129/151 (85.43%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASAS   SFGLRFSPLCSR S RVS   V + S NK  SL+LSSSHNIS FG   LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HI+P+S+I TPFTV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KR+
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of Carg10014 vs. TrEMBL
Match: tr|A0A2P5DAU3|A0A2P5DAU3_PARAD (50S ribosomal protein L35 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080780 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 6.1e-44
Identity = 108/152 (71.05%), Postives = 119/152 (78.29%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNK-AYSLRLSSSHNISRFGVALLQK 60
           MASA+   SFGL +SP+C   + R +R  ++L   NK A SL+LSSSH+IS F   L QK
Sbjct: 1   MASATMAVSFGLTYSPVCPHPT-RPARGLLQLAPFNKAANSLKLSSSHSISGFSSILPQK 60

Query: 61  PFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
              I PS       T+VAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNTKR
Sbjct: 61  LCTIVPSPNTLRSLTIVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           KLRLSKMHPV+RSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVNRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Carg10014 vs. TrEMBL
Match: tr|A0A2P5FNJ7|A0A2P5FNJ7_9ROSA (50S ribosomal protein L35 OS=Trema orientalis OX=63057 GN=TorRG33x02_048630 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.7e-43
Identity = 106/152 (69.74%), Postives = 116/152 (76.32%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRXXVRLPSSNK-AYSLRLSSSHNISRFGVALLQK 60
           MASA+   SFGL +SP C   + R +R  ++L   NK A SL+L SSH+IS F     QK
Sbjct: 1   MASATMAVSFGLTYSPFCPHPT-RPARGLLQLAPFNKAASSLKLGSSHSISGFSSIFPQK 60

Query: 61  PFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
              I PS       T+VAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNTKR
Sbjct: 61  LCTIVPSPNTLRSLTIVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           KLRLSKMHPV+RSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVNRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Carg10014 vs. TrEMBL
Match: tr|A0A2I4EH65|A0A2I4EH65_9ROSI (50S ribosomal protein L35 OS=Juglans regia OX=51240 GN=LOC108989547 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.6e-42
Identity = 107/153 (69.93%), Postives = 116/153 (75.82%), Query Frame = 0 

Query: 1   MASASATASFGLRF-SPLCSRSSVRVSR-XXVRLPSSNKAYSLRLSSSHNISRFGVALLQ 60
           MA A+ T SFG R  S LC   S R SR   V+L   NK  SLRLSSSH++SRFG  L Q
Sbjct: 1   MACATLTVSFGFRVTSTLCPPPSARASRGLSVQLAPFNKLSSLRLSSSHSVSRFGSVLPQ 60

Query: 61  KPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK 120
           K    AP        T+V+AKGYK KTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN+K
Sbjct: 61  KLCTTAPLIHRLRSLTIVSAKGYKRKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNSK 120

Query: 121 RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           RKLRLSKMH VSRSDYDNVIGALPYLKVNR+A+
Sbjct: 121 RKLRLSKMHAVSRSDYDNVIGALPYLKVNRKAE 153

The following BLAST results are available for this feature:
BLAST of Carg10014 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922051.14.0e-7197.3550S ribosomal protein L35, chloroplastic-like [Cucurbita moschata][more]
XP_022988597.16.7e-7196.0350S ribosomal protein L35, chloroplastic-like [Cucurbita maxima][more]
XP_023516182.11.5e-7098.0150S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022135558.19.8e-6288.1650S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia][more]
XP_008443834.12.9e-5882.12PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo][more]
BLAST of Carg10014 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G24090.11.4e-3361.59Ribosomal protein L35[more]
BLAST of Carg10014 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8VZ55|RK35_ARATH2.5e-3261.5950S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3... [more]
sp|P23326|RK35_SPIOL3.6e-3160.3850S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 P... [more]
sp|Q3M7I2|RL35_ANAVT4.5e-1058.7350S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) ... [more]
sp|Q8YRL9|RL35_NOSS14.5e-1058.7350S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576... [more]
sp|B2J0D1|RL35_NOSP75.0e-0957.1450S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ... [more]
BLAST of Carg10014 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B9R8|A0A1S3B9R8_CUCME1.9e-5882.1250S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1[more]
tr|A0A0A0LYX0|A0A0A0LYX0_CUCSA4.1e-5680.7950S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1[more]
tr|A0A2P5DAU3|A0A2P5DAU3_PARAD6.1e-4471.0550S ribosomal protein L35 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080780 ... [more]
tr|A0A2P5FNJ7|A0A2P5FNJ7_9ROSA6.7e-4369.7450S ribosomal protein L35 OS=Trema orientalis OX=63057 GN=TorRG33x02_048630 PE=3... [more]
tr|A0A2I4EH65|A0A2I4EH65_9ROSI2.6e-4269.9350S ribosomal protein L35 OS=Juglans regia OX=51240 GN=LOC108989547 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR037229Ribosomal_L35_sf
IPR018265Ribosomal_L35_CS
IPR021137Ribosomal_L35
IPR001706Ribosomal_L35_non-mt
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10014-RACarg10014-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001706Ribosomal protein L35, non-mitochondrialPRINTSPR00064RIBOSOMALL35coord: 115..133
score: 37.84
coord: 100..114
score: 48.25
coord: 82..99
score: 61.11
IPR001706Ribosomal protein L35, non-mitochondrialTIGRFAMTIGR00001TIGR00001coord: 81..143
e-value: 2.9E-23
score: 79.9
IPR001706Ribosomal protein L35, non-mitochondrialHAMAPMF_00514Ribosomal_L35coord: 80..143
score: 15.648
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 81..137
e-value: 1.9E-20
score: 73.0
IPR021137Ribosomal protein L35PANTHERPTHR33343FAMILY NOT NAMEDcoord: 23..143
NoneNo IPR availableGENE3DG3DSA:2.40.50.530coord: 81..143
e-value: 1.1E-19
score: 72.8
IPR018265Ribosomal protein L35, conserved sitePROSITEPS00936RIBOSOMAL_L35coord: 84..110
IPR037229Ribosomal protein L35 superfamilySUPERFAMILYSSF143034L35p-likecoord: 81..143

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10014Cla018755Watermelon (97103) v1carwmB0126
Carg10014Csa1G257920Cucumber (Chinese Long) v2carcuB0136
Carg10014MELO3C010199Melon (DHL92) v3.5.1carmeB0131
Carg10014ClCG06G012650Watermelon (Charleston Gray)carwcgB0125
Carg10014CSPI01G17980Wild cucumber (PI 183967)carcpiB0138
Carg10014Cucsa.170750Cucumber (Gy14) v1carcgyB0156
Carg10014CmaCh11G004410Cucurbita maxima (Rimu)carcmaB0169
Carg10014CmaCh10G004470Cucurbita maxima (Rimu)carcmaB0166
Carg10014CmoCh11G004410Cucurbita moschata (Rifu)carcmoB0175
Carg10014CmoCh10G004810Cucurbita moschata (Rifu)carcmoB0172
Carg10014Cp4.1LG18g05810Cucurbita pepo (Zucchini)carcpeB0185
Carg10014CsGy1G018050Cucumber (Gy14) v2carcgybB0132
Carg10014MELO3C010199.2Melon (DHL92) v3.6.1carmedB0135
Carg10014CsaV3_1G029200Cucumber (Chinese Long) v3carcucB0142
Carg10014Cla97C06G121870Watermelon (97103) v2carwmbB0133
Carg10014Bhi02G000659Wax gourdcarwgoB0165
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10014Carg14072Silver-seed gourdcarcarB151
The following block(s) are covering this gene:
GeneOrganismBlock
Carg10014Cucumber (Gy14) v2carcgybB0138
Carg10014Cucumber (Gy14) v1carcgyB0151
Carg10014Cucurbita pepo (Zucchini)carcpeB0186
Carg10014Wild cucumber (PI 183967)carcpiB0144
Carg10014Cucumber (Chinese Long) v2carcuB0133
Carg10014Cucumber (Chinese Long) v2carcuB0140
Carg10014Cucumber (Chinese Long) v3carcucB0148
Carg10014Bottle gourd (USVL1VR-Ls)carlsiB112
Carg10014Bottle gourd (USVL1VR-Ls)carlsiB116
Carg10014Wax gourdcarwgoB0156