Carg14072 (gene) Silver-seed gourd

Overview
NameCarg14072
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description50S ribosomal protein L35
LocationCucurbita_argyrosperma_scaffold_097 : 673504 .. 675977 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCACTTTATCCACAGCAGGCCGAGGCCAAGGCTCGTAGAGATTGGCAGAAAGAAGAAGAAAGACCAGAGGGTTCGAAGCTTCAGTGATGGCATCTGCTTCGACGGCGGCGGTCTTTGGTCTTAGGTTTACGCCACTGTGTTCTCGGCCATCATTTCACGTCTCTCTTAGTTCCATCCGGCTCGCTTCGTTCAATAAGGCGAACTCGTTGAGGCTCAGTTCCTCTCACAACATTTCCGGGGTTGGAGTTGCTCTCCTTCAGAAGTCATGTCAAATCGCTCCCCGTCCTCAAGTTTCTACTCCTCTGACTGTTGTCGCTGCTAAAGGCTACAAAATGAAAACCCACAAGGTTTCCTCGATGCCTCTCTTCTCTGTGTATTTTGGGATATTCTTGTATGGTTCAATTCTGATTGTATTTTGATTGAATTGAAGTCAATTTCATTCTTCTGGATAGCTTTAATGTGTCTAGTTGCTATTTTTCGTTCGAATTTGCAGTAAGATTTGACAATCGCAGGCTGAGTTTAAAATATCCAATTCTAGACGCTTACTGAAGGGGCCAATATTATTATTATTTCAAATAATAAGCGCCTCTTTCCTCTGCTTTCTACTGGAATTTTCTTCTTTTGATTTTGATTTGATTGTTTGGTGTTGCTGGATAGGCTTCGGCCAAGCGATTCAGGGTGACGGGTCGGGGGAAAATTGTTCGGAGGAGAGCAGGAAAGCAGCATTTGCTGTACAAGAAGAACACCAAGAGAAAATTACGGCTTTCCAAAATGGTATGTCTTCCCTGATTATTTTTATGTTCATGACTCTGAATCTGAATGCTGCGTTTCTAAACTTGGACCCTTGATTTTGGTTTTGGAAGAAGTTTTGTATAAATGTATAAGAAGTTAAGGCTATGCAGGCACTATTTTCAATCAGTATGATTTCTCGACACCTTATTCCATCAATCTTCATTTCTTGAATGCAAGTTGTCAATCCAGTTCTACAAATAATCTTTACCGAAGTTGGAAGTTCTTTCTTCTGTTGATTCTATCCCAATCATATTGTTAACTTATGACATGCACAACTCAATTAAGTTTGTCTTGGAAGGATGAACTAATGTGAAGTTATTAACCAGTTGTCATGGCTGGATATGTTGAGAATGATTGAGAGTAGTAGTCCCACATTAACTAAATAAGAGGAAAATCATGAGTTTATAAGTAAGGAACACAATTTCTATTGGTACGAAGCTTTTTAGGAAAACATCATATTATTGTGGAGGTTTGTGACGTCTAAGAGAATCACACAACAATCCCAATCCCACTGCTATCGTAGAGCTCATTTAGGAAAAAACTGGTCATAAAATGATGACCAACTGGTCAAGAGAACTTGATTTCCCCCTAGCATTTTTCTTTCCCTGCGGGTAGATTTTAATTTTGTACTTCTCAATTTGTTATTAATAGCTAGAATGCAAGGAGGATTTGAAGGGTAGTCTCTTTTTTCATAGCCTTTTGATAGTTCTCCCTTTCCCAACCTTAAGCAGAGTGATTCCTATTTGGGGATTAGCTGACACTTCCCCGGACTGATTTCTTTTAGTCGTAGGCCAACTCTATAGATGTTTATGGAAACATCAAAAAGAAGTTTTTTTGTTTAAATTTGACTCCATCTAGATTGTTACAGCCTCGTCCCGACTTTTTGTCTTTTTCTAGGTGTAAGTTTAAGGCTTACCCATTAAGCCCATAGATCTTTTGCATTTATATCATGTAGCTTATGTTTAATGAACTGTTAGAGCAATAAAGTGCTTCACCTAGCAATTCTTTTATCAATAATATTTATTTATAAGATTTTGTGATTATGAACTAAGTGACTTGATGTTGGGAAAATTTCTAGTACTGGAAGAGGATGAAATTCATTGTTTGCCAAAAAATAAAATGATGCCAGAATTCTGGTGTGTTGCTCTTGCTGTGTGAGGCAAATTGGTAGTGCTCATGCAGTCGCATATCTTGTTGTTATGTTTACTGAGTGTTGTCTTTGATTGGCTTTTGTTTCAACACAGCACCCAGTTAGCCGAAGTGACTACGATAATGTGATCGGTGCTTTGCCATACCTGAAGGTGAACAGGCAAGCGCAGTAGAGGCCATCACCTCACCCCATTAGATCTTGGCTCTACTTAGTTCATTTGTAATTGTAACCAAATGATTTTCAATTTTCCAGAACTCCTCAAAGAGCTAAGTTTGATTGCTTTTGAATATTATTTCTCTAGTTTATACCATCAGTTCATAATGGTGCTTTCTTTTAATTCTCTTCCTCTCGTCTCTTTTTGCTAATCTTCTTGGGCTATAAAACCGAAGTCATCTTCTCTGTAAATCACGATCATTTTGTCCTTGTCGAATATGTCTAACCTGTTTGATCAGTTGTATCTCAACATATAAAAATATAACTCCGTAGCTAAATGGCAATTGCACTTCTGTTTGCTCAGGGAATTGACTTTTT

mRNA sequence

TTCACTTTATCCACAGCAGGCCGAGGCCAAGGCTCGTAGAGATTGGCAGAAAGAAGAAGAAAGACCAGAGGGTTCGAAGCTTCAGTGATGGCATCTGCTTCGACGGCGGCGGTCTTTGGTCTTAGGTTTACGCCACTGTGTTCTCGGCCATCATTTCACGTCTCTCTTAGTTCCATCCGGCTCGCTTCGTTCAATAAGGCGAACTCGTTGAGGCTCAGTTCCTCTCACAACATTTCCGGGGTTGGAGTTGCTCTCCTTCAGAAGTCATGTCAAATCGCTCCCCGTCCTCAAGTTTCTACTCCTCTGACTGTTGTCGCTGCTAAAGGCTACAAAATGAAAACCCACAAGGCTTCGGCCAAGCGATTCAGGGTGACGGGTCGGGGGAAAATTGTTCGGAGGAGAGCAGGAAAGCAGCATTTGCTGTACAAGAAGAACACCAAGAGAAAATTACGGCTTTCCAAAATGCACCCAGTTAGCCGAAGTGACTACGATAATGTGATCGGTGCTTTGCCATACCTGAAGGTGAACAGGCAAGCGCAGTAGAGGCCATCACCTCACCCCATTAGATCTTGGCTCTACTTAGTTCATTTGTAATTGTAACCAAATGATTTTCAATTTTCCAGAACTCCTCAAAGAGCTAAGTTTGATTGCTTTTGAATATTATTTCTCTAGTTTATACCATCAGTTCATAATGGTGCTTTCTTTTAATTCTCTTCCTCTCGTCTCTTTTTGCTAATCTTCTTGGGCTATAAAACCGAAGTCATCTTCTCTGTAAATCACGATCATTTTGTCCTTGTCGAATATGTCTAACCTGTTTGATCAGTTGTATCTCAACATATAAAAATATAACTCCGTAGCTAAATGGCAATTGCACTTCTGTTTGCTCAGGGAATTGACTTTTT

Coding sequence (CDS)

ATGGCATCTGCTTCGACGGCGGCGGTCTTTGGTCTTAGGTTTACGCCACTGTGTTCTCGGCCATCATTTCACGTCTCTCTTAGTTCCATCCGGCTCGCTTCGTTCAATAAGGCGAACTCGTTGAGGCTCAGTTCCTCTCACAACATTTCCGGGGTTGGAGTTGCTCTCCTTCAGAAGTCATGTCAAATCGCTCCCCGTCCTCAAGTTTCTACTCCTCTGACTGTTGTCGCTGCTAAAGGCTACAAAATGAAAACCCACAAGGCTTCGGCCAAGCGATTCAGGGTGACGGGTCGGGGGAAAATTGTTCGGAGGAGAGCAGGAAAGCAGCATTTGCTGTACAAGAAGAACACCAAGAGAAAATTACGGCTTTCCAAAATGCACCCAGTTAGCCGAAGTGACTACGATAATGTGATCGGTGCTTTGCCATACCTGAAGGTGAACAGGCAAGCGCAGTAG

Protein sequence

MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKSCQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
Homology
[Close]
BLAST of Carg14072 vs. NCBI nr
Match: XP_022933399.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 285.8 bits (730), Expect = 8.5e-74
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60
           MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS
Sbjct: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60

Query: 61  CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of Carg14072 vs. NCBI nr
Match: XP_023531155.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.1 bits (710), Expect = 1.8e-71
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60
           MAS S A VFGLRFTPLCSRPSFHVS SSIRLASFNKANSLRLSSSHNISGVGVALLQKS
Sbjct: 1   MASVSAAVVFGLRFTPLCSRPSFHVSHSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60

Query: 61  CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of Carg14072 vs. NCBI nr
Match: XP_023004823.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 1.4e-68
Identity = 140/145 (96.55%), Postives = 143/145 (98.62%), Query Frame = 0 

Query: 7   AAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKSCQIAPR 66
           A+VFGLRFTPLCSRPSFHVS +SIRLASFNK NSLRLSSSHNISGVGVALLQKSCQI+PR
Sbjct: 2   ASVFGLRFTPLCSRPSFHVSHTSIRLASFNKPNSLRLSSSHNISGVGVALLQKSCQISPR 61

Query: 67  PQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKM 126
           PQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKM
Sbjct: 62  PQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKM 121

Query: 127 HPVSRSDYDNVIGALPYLKVNRQAQ 152
           HPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 122 HPVSRSDYDNVIGALPYLKVNRQAQ 146

[Close]
BLAST of Carg14072 vs. NCBI nr
Match: XP_022135558.1 (50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 240.0 bits (611), Expect = 5.4e-60
Identity = 132/152 (86.84%), Postives = 135/152 (88.82%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLA-SFNKANSLRLSSSHNISGVGVALLQK 60
           MASAST   FGLRF+PLCSRPS  VS  S+RLA SFNK NSLRL SS NISG GVALLQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  SCQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
           S  IAP  QV TPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152

[Close]
BLAST of Carg14072 vs. NCBI nr
Match: XP_008443834.1 (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 2.9e-58
Identity = 123/151 (81.46%), Postives = 132/151 (87.42%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60
           MASAS A  FGLRF+PLCSRPSF VS +S+ LASFNK NSL+LSSSHNISG G+  LQK 
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
             I+P  Q+ TP TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR+
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSK+HPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of Carg14072 vs. TAIR10
Match: AT2G24090.1 (Ribosomal protein L35)

HSP 1 Score: 141.7 bits (356), Expect = 3.6e-34
Identity = 95/152 (62.50%), Postives = 106/152 (69.74%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPLCSRPSFHVSL-SSIRLASFNKANSLRLSSSHNISGVGVAL-LQ 60
           MAS S A+V  + F       S  VSL SS+  A+        LSSSH+ISG+   L L+
Sbjct: 1   MASLSMASV-NVSFCHPLRSSSPKVSLRSSVHFAT-------SLSSSHSISGLRAVLPLK 60

Query: 61  KSCQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK 120
            S   +P  Q     TV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN K
Sbjct: 61  ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNK 120

Query: 121 RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           RKLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 RKLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]
BLAST of Carg14072 vs. Swiss-Prot
Match: sp|Q8VZ55|RK35_ARATH (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL35 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.5e-33
Identity = 95/152 (62.50%), Postives = 106/152 (69.74%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPLCSRPSFHVSL-SSIRLASFNKANSLRLSSSHNISGVGVAL-LQ 60
           MAS S A+V  + F       S  VSL SS+  A+        LSSSH+ISG+   L L+
Sbjct: 1   MASLSMASV-NVSFCHPLRSSSPKVSLRSSVHFAT-------SLSSSHSISGLRAVLPLK 60

Query: 61  KSCQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK 120
            S   +P  Q     TV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN K
Sbjct: 61  ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNK 120

Query: 121 RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           RKLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 RKLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]
BLAST of Carg14072 vs. Swiss-Prot
Match: sp|P23326|RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-30
Identity = 95/158 (60.13%), Postives = 108/158 (68.35%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPL-CSRPSFHVSLS-SIRLASFNK--ANSLRLSSSHNISGVGV-A 60
           MA AS  A    +   L  S PS   S +  I L  FNK   ++L LSSS +IS   V  
Sbjct: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKVQP 60

Query: 61  LLQKSCQIAP-RPQVST---PLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHL 120
           ++ K+ +I+     VST     TV AAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQHL
Sbjct: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120

Query: 121 LYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ 150
           L KKNTKRK RLSK+  V RSDYDNVIGALPYLKVNR+
Sbjct: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158

[Close]
BLAST of Carg14072 vs. Swiss-Prot
Match: sp|Q3M7I2|RL35_ANAVT (50S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of Carg14072 vs. Swiss-Prot
Match: sp|Q8YRL9|RL35_NOSS1 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of Carg14072 vs. Swiss-Prot
Match: sp|B2J0D1|RL35_NOSP7 (50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpmI PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-09
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ +K  +SK   V   D  NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAGKSHLLEHKSSDKKRSMSKTTLVHERDELNVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of Carg14072 vs. TrEMBL
Match: tr|A0A1S3B9R8|A0A1S3B9R8_CUCME (50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.9e-58
Identity = 123/151 (81.46%), Postives = 132/151 (87.42%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60
           MASAS A  FGLRF+PLCSRPSF VS +S+ LASFNK NSL+LSSSHNISG G+  LQK 
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
             I+P  Q+ TP TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR+
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSK+HPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of Carg14072 vs. TrEMBL
Match: tr|A0A0A0LYX0|A0A0A0LYX0_CUCSA (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.1e-56
Identity = 121/151 (80.13%), Postives = 129/151 (85.43%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60
           MASAS A  FGLRF+PLCSRPSF VS +S+ +AS NK NSL+LSSSHNISG G   LQK 
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
             I+P  Q+ TP TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KR+
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of Carg14072 vs. TrEMBL
Match: tr|A0A2P5DAU3|A0A2P5DAU3_PARAD (50S ribosomal protein L35 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080780 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 9.1e-48
Identity = 110/152 (72.37%), Postives = 123/152 (80.92%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNK-ANSLRLSSSHNISGVGVALLQK 60
           MASA+ A  FGL ++P+C  P+   +   ++LA FNK ANSL+LSSSH+ISG    L QK
Sbjct: 1   MASATMAVSFGLTYSPVCPHPT-RPARGLLQLAPFNKAANSLKLSSSHSISGFSSILPQK 60

Query: 61  SCQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            C I P P     LT+VAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNTKR
Sbjct: 61  LCTIVPSPNTLRSLTIVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           KLRLSKMHPV+RSDYDNVIGALPYLKVNRQA+
Sbjct: 121 KLRLSKMHPVNRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Carg14072 vs. TrEMBL
Match: tr|A0A2P5FNJ7|A0A2P5FNJ7_9ROSA (50S ribosomal protein L35 OS=Trema orientalis OX=63057 GN=TorRG33x02_048630 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.8e-46
Identity = 107/152 (70.39%), Postives = 120/152 (78.95%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNK-ANSLRLSSSHNISGVGVALLQK 60
           MASA+ A  FGL ++P C  P+   +   ++LA FNK A+SL+L SSH+ISG      QK
Sbjct: 1   MASATMAVSFGLTYSPFCPHPT-RPARGLLQLAPFNKAASSLKLGSSHSISGFSSIFPQK 60

Query: 61  SCQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            C I P P     LT+VAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNTKR
Sbjct: 61  LCTIVPSPNTLRSLTIVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           KLRLSKMHPV+RSDYDNVIGALPYLKVNRQA+
Sbjct: 121 KLRLSKMHPVNRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Carg14072 vs. TrEMBL
Match: tr|W9SHK1|W9SHK1_9ROSA (50S ribosomal protein L35 OS=Morus notabilis OX=981085 GN=L484_008496 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-43
Identity = 102/150 (68.00%), Postives = 117/150 (78.00%), Query Frame = 0 

Query: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60
           MASA+ A  FG  ++P C R +  +S  S+RLA F+KA SL+LSSSH IS     L ++ 
Sbjct: 1   MASATMAVSFGFSYSPFCPRRT-PLSRGSVRLAPFHKAASLKLSSSHCISAFSSVLPRRL 60

Query: 61  CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           C ++P P     LT+ +AKGYK KTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KRK
Sbjct: 61  CSVSPSPCSPRSLTIFSAKGYKRKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNNKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNR+A
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRKA 149

The following BLAST results are available for this feature:
BLAST of Carg14072 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933399.18.5e-74100.0050S ribosomal protein L35, chloroplastic-like [Cucurbita moschata][more]
XP_023531155.11.8e-7197.3550S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_023004823.11.4e-6896.5550S ribosomal protein L35, chloroplastic-like [Cucurbita maxima][more]
XP_022135558.15.4e-6086.8450S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia][more]
XP_008443834.12.9e-5881.46PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo][more]
BLAST of Carg14072 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G24090.13.6e-3462.50Ribosomal protein L35[more]
BLAST of Carg14072 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8VZ55|RK35_ARATH6.5e-3362.5050S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3... [more]
sp|P23326|RK35_SPIOL1.0e-3060.1350S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 P... [more]
sp|Q3M7I2|RL35_ANAVT4.5e-1058.7350S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) ... [more]
sp|Q8YRL9|RL35_NOSS14.5e-1058.7350S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576... [more]
sp|B2J0D1|RL35_NOSP75.0e-0957.1450S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ... [more]
BLAST of Carg14072 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B9R8|A0A1S3B9R8_CUCME1.9e-5881.4650S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1[more]
tr|A0A0A0LYX0|A0A0A0LYX0_CUCSA3.1e-5680.1350S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1[more]
tr|A0A2P5DAU3|A0A2P5DAU3_PARAD9.1e-4872.3750S ribosomal protein L35 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080780 ... [more]
tr|A0A2P5FNJ7|A0A2P5FNJ7_9ROSA3.8e-4670.3950S ribosomal protein L35 OS=Trema orientalis OX=63057 GN=TorRG33x02_048630 PE=3... [more]
tr|W9SHK1|W9SHK1_9ROSA1.0e-4368.0050S ribosomal protein L35 OS=Morus notabilis OX=981085 GN=L484_008496 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR037229Ribosomal_L35_sf
IPR018265Ribosomal_L35_CS
IPR021137Ribosomal_L35
IPR001706Ribosomal_L35_non-mt
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14072-RACarg14072-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001706Ribosomal protein L35, non-mitochondrialPRINTSPR00064RIBOSOMALL35coord: 115..133
score: 37.84
coord: 100..114
score: 48.25
coord: 82..99
score: 61.11
IPR001706Ribosomal protein L35, non-mitochondrialTIGRFAMTIGR00001TIGR00001coord: 81..143
e-value: 2.9E-23
score: 79.9
IPR001706Ribosomal protein L35, non-mitochondrialHAMAPMF_00514Ribosomal_L35coord: 80..143
score: 15.648
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 81..137
e-value: 1.9E-20
score: 73.0
IPR021137Ribosomal protein L35PANTHERPTHR33343FAMILY NOT NAMEDcoord: 25..143
NoneNo IPR availableGENE3DG3DSA:2.40.50.530coord: 81..143
e-value: 1.1E-19
score: 72.8
IPR018265Ribosomal protein L35, conserved sitePROSITEPS00936RIBOSOMAL_L35coord: 84..110
IPR037229Ribosomal protein L35 superfamilySUPERFAMILYSSF143034L35p-likecoord: 81..143

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg14072Cla018755Watermelon (97103) v1carwmB0507
Carg14072Csa1G257920Cucumber (Chinese Long) v2carcuB0532
Carg14072MELO3C010199Melon (DHL92) v3.5.1carmeB0509
Carg14072ClCG06G012650Watermelon (Charleston Gray)carwcgB0496
Carg14072CSPI01G17980Wild cucumber (PI 183967)carcpiB0539
Carg14072Cucsa.170750Cucumber (Gy14) v1carcgyB0581
Carg14072CmaCh11G004410Cucurbita maxima (Rimu)carcmaB0710
Carg14072CmaCh10G004470Cucurbita maxima (Rimu)carcmaB0709
Carg14072CmoCh11G004410Cucurbita moschata (Rifu)carcmoB0689
Carg14072CmoCh10G004810Cucurbita moschata (Rifu)carcmoB0688
Carg14072Cp4.1LG18g05810Cucurbita pepo (Zucchini)carcpeB0715
Carg14072CsGy1G018050Cucumber (Gy14) v2carcgybB0508
Carg14072MELO3C010199.2Melon (DHL92) v3.6.1carmedB0515
Carg14072CsaV3_1G029200Cucumber (Chinese Long) v3carcucB0537
Carg14072Cla97C06G121870Watermelon (97103) v2carwmbB0534
Carg14072Bhi02G000659Wax gourdcarwgoB0620
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg14072Carg10014Silver-seed gourdcarcarB151
The following block(s) are covering this gene:
GeneOrganismBlock
Carg14072Wax gourdcarwgoB0616
Carg14072Silver-seed gourdcarcarB493
Carg14072Cucumber (Gy14) v2carcgybB0510
Carg14072Cucumber (Gy14) v1carcgyB0578
Carg14072Cucurbita maxima (Rimu)carcmaB0711
Carg14072Cucurbita moschata (Rifu)carcmoB0690
Carg14072Cucurbita pepo (Zucchini)carcpeB0717
Carg14072Wild cucumber (PI 183967)carcpiB0540
Carg14072Cucumber (Chinese Long) v2carcuB0531
Carg14072Cucumber (Chinese Long) v2carcuB0533
Carg14072Cucumber (Chinese Long) v3carcucB0538
Carg14072Bottle gourd (USVL1VR-Ls)carlsiB459
Carg14072Bottle gourd (USVL1VR-Ls)carlsiB463
Carg14072Melon (DHL92) v3.5.1carmeB0511
Carg14072Melon (DHL92) v3.6.1carmedB0517
Carg14072Watermelon (Charleston Gray)carwcgB0491
Carg14072Watermelon (97103) v1carwmB0506
Carg14072Watermelon (97103) v2carwmbB0530