Cucsa.170750 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACAGCAGGCCAAGTCTGAGGCTCGTAGAGATTGGTAAGAAGAAGAGAGTCGAGACGCTTCGAAACTTCAGAAGCTATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGTCCCTCCACCACTCTCTCTTCTCTATATTTTTGTATGGTTAAATTCTGGTTGGATTCTGATTAATTTGAAGCTAATTTCAGTCTTCTAGATAGTTTGAACATATTTTGTTGTTTATTTCAAACGAATTTGTATTATAATACGAGAATGGCATGTTGAATTTTAAACCCTTTAAATCACCCAATTCTAGACGCTTACTGAATGAGCTAATAGCATTATGAATTGTTGAACAATACGCCTCTGTCTTCTCTGTTTTTACTGGGATTTTCCCTGTTCATTTTGATTTTATTGTTTTGTGTTACTGTTTAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGGTATGTCTTCTTTATTTATTTTAATGTTCATGATTCTTTATTTGTTATGCTGCATTTCTAAACTTAGGTCCTTGAGTTTTTCTGGGAAAAGATTTATATAAATGGTCATAACTTAGCCAATGTAGCCACTACTTTCAATCCCTATGATTCTTCTCTAAGTTATCTACCAATTTCCCTCTCTTAAATGCAAGTTATCAAAGTAGTTATGTGAAGAATCTTACCGAAGTTGGAATGTACTTCCTCATTTGATTCAATCCCGATCATATTGTCAGCTAATAACGTGCATTCCAACTCAATTAACTTTGTATTGGAAGTATGATCTAATTTGAAGTTATTCATCGGTTGTCATGGTCTGTTCAGACAATAATCCCCAGAGCTATCATTGATGGTGATCTTGAAGATTTCACAAAGATCATTTAGGAAACAAGTTTTGTTTCGTTTTGTGCCCAAGACCTTGTCCAGGAACCCCAAGCACAAGAAAATATAGCTTCGAGCATACCTTTAGTTTTGGATCTTCAAAATTTTTTACACTAGCTATAGTGTTGATTGGTTTTTTATTGGTTGCTTCCGACTCCGAAATGGATAACCAATTGAGGGGGGGATATAAAGGGTACAATCTTCTTCCAACCTTGAACATTTTGAAGGGAGAGGTTCAAGAGACAAGATGACTTTTTGCCTATCACTTTCTCAGTTGATTTCTTGTAGTTGGAGTAATGGCTTACTCTGTAGATGCTTATGAGAGCATTAAAAGCAGTTCCTTATGGCCTTTTGTTCAAATCTGATTCCATCTTGATTGTTTCTGTCTGGTTTAGTCTGCTGATTTTCCCTGAGCATATAGACGTTTTGCGTTTTTATCATGTAGCATATGGTTAGTGAACTCTTAGATCAACAAAATACTTCACCTAGGAATTCCTTTTATCAACAATATTCACACATAAGATTCTGATACAAACACAAACTTCCTTGATACACAATGAACTGACCGTCCTATTCAGCCTCATCAATTGCCGAAACAAAATGAAGGTAAGAAGGTAAGAAATCCAACAAGGAAAATGATTTTGGTCACTTGTTTTGTTGAATGATGACCCCTGGAAAATTCTCATGCAGTTGTTCTATGTCTAGTTATGTTACTCAGTGTTTTCTTGATTGGTTTGTCTTAACACAGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAGAAGTGATGTTGGGATCTTGCCTGTACTTAACTTCATTTTGTAACCAAATGATTTTCAATTTTCCAGAACTCATCAAAGGGCAAAGTTTGATTGGTTAAAAATATTATTTGTTCTATTTATTCCCTCAGTTGATAATGGTACCTACTACCTTCTTTCAGTTCCCTTCCTCTATTGTTGGCTATTCTGACAGGCTACAAGATGGAGCTTATTTCTTCCGTAAATTATGAGTACCTGAGAGGGTTCAAGCCCATATGGAAAATATCTGGTTTGTTTTCTTAGTTTCGTCTCATATCATATTCATAAATATAGTAACGAAGAATTGTCAAAAATAGCAAATTTGATAAACTATTTATAACATATAGCAAAAATTTTAAATTCTATCAATAATAAACCTTGTGATAGAAGTCTTGTTAGTTTTTATCATTGGTAGAATTTAAAATTTTGCTATAACTTGTAAATA ACAGCAGGCCAAGTCTGAGGCTCGTAGAGATTGGTAAGAAGAAGAGAGTCGAGACGCTTCGAAACTTCAGAAGCTATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAGAAGTGATGTTGGGATCTTGCCTGTACTTAACTTCATTTTGTAACCAAATGATTTTCAATTTTCCAGAACTCATCAAAGGGCAAAGTTTGATTGGTTAAAAATATTATTTGTTCTATTTATTCCCTCAGTTGATAATGGTACCTACTACCTTCTTTCAGTTCCCTTCCTCTATTGTTGGCTATTCTGACAGGCTACAAGATGGAGCTTATTTCTTCCGTAAATTATGAGTACCTGAGAGGGTTCAAGCCCATATGGAAAATATCTGGTTTGTTTTCTTAGTTTCGTCTCATATCATATTCATAAATATAGTaacgaagaattgtcaaaaatagcaaatttgataaactatttataacatatagcaaaaattttaaattctatcaataataaaccttgtgatagaagtcttgttagtttttatcattggtagaatttaaaattttgctataacttgtaaata ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAG MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ*
BLAST of Cucsa.170750 vs. Swiss-Prot
Match: RK35_ARATH (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana GN=RPL35 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 3.6e-36 Identity = 98/151 (64.90%), Postives = 107/151 (70.86%), Query Frame = 1
BLAST of Cucsa.170750 vs. Swiss-Prot
Match: RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 9.9e-34 Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 1
BLAST of Cucsa.170750 vs. Swiss-Prot
Match: RL35_SYNE7 (50S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmI PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10 Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1
BLAST of Cucsa.170750 vs. Swiss-Prot
Match: RL35_SYNP6 (50S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmI PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10 Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1
BLAST of Cucsa.170750 vs. Swiss-Prot
Match: RL35_NOSS1 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpmI PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.6e-10 Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
BLAST of Cucsa.170750 vs. TrEMBL
Match: A0A0A0LYX0_CUCSA (50S ribosomal protein L35 OS=Cucumis sativus GN=Csa_1G257920 PE=3 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 2.7e-78 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1
BLAST of Cucsa.170750 vs. TrEMBL
Match: W9SHK1_9ROSA (50S ribosomal protein L35 OS=Morus notabilis GN=L484_008496 PE=3 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 5.1e-45 Identity = 102/150 (68.00%), Postives = 116/150 (77.33%), Query Frame = 1
BLAST of Cucsa.170750 vs. TrEMBL
Match: B9IMA0_POPTR (50S ribosomal protein L35 OS=Populus trichocarpa GN=POPTR_0018s11170g PE=3 SV=2) HSP 1 Score: 183.0 bits (463), Expect = 2.8e-43 Identity = 105/151 (69.54%), Postives = 119/151 (78.81%), Query Frame = 1
BLAST of Cucsa.170750 vs. TrEMBL
Match: A5BPA4_VITVI (50S ribosomal protein L35 OS=Vitis vinifera GN=VIT_16s0115g00310 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 6.2e-43 Identity = 104/158 (65.82%), Postives = 117/158 (74.05%), Query Frame = 1
BLAST of Cucsa.170750 vs. TrEMBL
Match: A9PBS9_POPTR (50S ribosomal protein L35 OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.1e-42 Identity = 105/151 (69.54%), Postives = 118/151 (78.15%), Query Frame = 1
BLAST of Cucsa.170750 vs. TAIR10
Match: AT2G24090.1 (AT2G24090.1 Ribosomal protein L35) HSP 1 Score: 152.5 bits (384), Expect = 2.1e-37 Identity = 98/151 (64.90%), Postives = 107/151 (70.86%), Query Frame = 1
BLAST of Cucsa.170750 vs. NCBI nr
Match: gi|449457865|ref|XP_004146668.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis sativus]) HSP 1 Score: 299.3 bits (765), Expect = 3.9e-78 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1
BLAST of Cucsa.170750 vs. NCBI nr
Match: gi|659086249|ref|XP_008443834.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo]) HSP 1 Score: 284.6 bits (727), Expect = 9.8e-74 Identity = 144/151 (95.36%), Postives = 146/151 (96.69%), Query Frame = 1
BLAST of Cucsa.170750 vs. NCBI nr
Match: gi|703155119|ref|XP_010111119.1| (50S ribosomal protein L35 [Morus notabilis]) HSP 1 Score: 188.7 bits (478), Expect = 7.3e-45 Identity = 102/150 (68.00%), Postives = 116/150 (77.33%), Query Frame = 1
BLAST of Cucsa.170750 vs. NCBI nr
Match: gi|1009109751|ref|XP_015891890.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 188.0 bits (476), Expect = 1.3e-44 Identity = 101/151 (66.89%), Postives = 118/151 (78.15%), Query Frame = 1
BLAST of Cucsa.170750 vs. NCBI nr
Match: gi|470148804|ref|XP_004309940.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Fragaria vesca subsp. vesca]) HSP 1 Score: 186.4 bits (472), Expect = 3.6e-44 Identity = 102/150 (68.00%), Postives = 115/150 (76.67%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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