CSPI01G17980 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G17980
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description50S ribosomal protein L35
LocationChr1 : 13460359 .. 13462762 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAAATATATTTTTTGTTTTATTATTATCTTTTTAAAATTAAGAAATCGATAAATGAAATAAAATCGCTTCACTTTATCCGAACAGCAGGCCAAGTCTGAGGCTCGTAGAGATTGGTAAGAAGAAGAGAGTCGAGACGCTTCGAAACTTCAGAAGCTATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGTCCCTCCACCACTCTCTCTTCTCTATATTTTTGTATGGTTAAATTCTGGTTGGATTCTGATTAATTTGAAGCTAATTTCAGTCTTCTAGATAGTTTGAACATATTTTGTTGTTTATTTCAAACGAATTTTTATTATAATACGAGAATGGCATGTTGAATTTTAAACCCTTTAAATCACCCAATTCTAGACGCTTACTGAATGAGCTAATAGCATTATGAATTGTTGAACAATACGCCTCTGTCTTCTCTGTTTTTACTGGGATTTTCCCTGTTCATTTTGATTTTATTGTTTTGTGTTACTGTTTAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGGTATGTCTTCTTTATTTATTTTAATGTTCATGATTCTTTATTTGTTATGCTGCATTTCTAAACTTAGGTCCTTGAGTTTTTCTGGGAAAAGATTTATATAAACGGTCATAACTTAGCCAATGTAGCCACTACTTTCAATCCCTATGATTCTTCTCTAAGTTATCTACCAATTTCCCTCTCTTAAATGCAAGTTATCAAAGTAGTTATGTGAAGAATCTTACCGAAGTTGGAATGTACTTCCTCATTTGATTCAATCCCGATCATATTGTCAGCTAATAACGTGCATTCCAACTCAATTAACTTTGTATTGGAAGTATGATCTAATTTGAAGTTATTCATCGGTTGTCATGGTCTGTTCAGACAATAATCCCCAGAGCTATCATTGATGGTGATCTTGAAGATTTCACAAAGATCATTTAGGAAACAAGTTTTGTTTCGTTTTGTGCCCAAGACCTTGTCCAGGAACCCCAAGCACAAGAAAATATAGCTTCGAACATACCTTTAGTTTTGGATCTTCAAAATTTTTTACACTAGCTATAGTGTTGATTGGTTTTTTATTGGTTGCTTCCGACTCCGAAATGGATAACCAATTGAGGGGGGGATATAAAGGGTACAATCTTCTTCCAACCTTGAACATTTTGAAGGGAGAGGTTCAAGAGACAAGATGACTTTTTGCCTATCACTTTCTCAGTTGATTTCTTGTAGTTGGAGTAATGGCTTACTCTGTAGATGCTTATGAGAGCATTAAAAGCAGTTCCTTATGGCCTTTTGTTCAAATCTGATTCCATCTTGATTGTTTCTGTCTGGTTTAGTCTGCTGATTTTCCCTGAGCATATAGATGTTTTGCGTTTTTATCATGTAGCATATGGTTAGTGAACTCTTAGATCAACAAAATACTTCACCTAGGAATTCCTTTTATCAACAATATTCACACATAAGATTCTGATACAAACACAAACTTCCTTGATACACAATGAACTGACCGTCCTATTCAGTCTCATCAATTGCCGAAACAAAATGAAGGTAAGAAGGTAAGAAATCCAACGAGGAAAATGATTTTGGTCACTTGTTTTGTTGAATGATGACCCCTGGAAAATTCTCATGCAGTTGTTCTATGTCTAGTTATGTTACTCAGTGTTTTCTTGATTGGTTTGTCTTAACACAGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAGAAGTGATGTTGGGATCTTGCCTGTACTTAACTTCATTTTGTAACCAAATGATTTTCAATTTTCCAGAACTCATCAAAGGGCAAAGTTTGATTGGTTAAAAATATTATTTGTTCTATTTATTCCCTCAGTTGATAATGGTACCTACTACCTTCTTTCAGTTCCCTTCCTCTATTGTTGGCTATTCTGACAGGCTACAAGATGGAGCTTATTTCTTCCGTAAATTATGAGTACCTGAGAGGGTTCAAGCCCATATGGAAAATATCTGGTTTGTTTTCTTAGTTTCGTCTCATATCATATTCATGAATATAGTAATGGAG

mRNA sequence

ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAG

Coding sequence (CDS)

ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAG
Homology
[Close]
BLAST of CSPI01G17980 vs. Swiss-Prot
Match: RK35_ARATH (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana GN=RPL35 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.9e-34
Identity = 98/151 (64.90%), Postives = 107/151 (70.86%), Query Frame = 1 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MAS SMA S  + F       S +VS  S    SV+   SL  SSSH+ISG       K 
Sbjct: 1   MASLSMA-SVNVSFCHPLRSSSPKVSLRS----SVHFATSL--SSSHSISGLRAVLPLKI 60

Query: 61  SHI-SPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120
           S + SP SQ    FTVFA KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KR
Sbjct: 61  STVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKR 120

Query: 121 RLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           +LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 KLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]
BLAST of CSPI01G17980 vs. Swiss-Prot
Match: RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-31
Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 1 

Query: 1   MASASMAVSF---GLRFSPLCSRPSFRVSHTS-VGIASVNKV--NSLKLSSSHNISGFGF 60
           MASA+  +SF    L  SP    PS R S    + +   NK   ++L LSSS +IS    
Sbjct: 3   MASATATLSFKTPSLSLSP----PSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKV 62

Query: 61  NSL----QKPSHISPTSQIRTP-FTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQ 120
             +    ++ S +  +    +P FTVFAAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQ
Sbjct: 63  QPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQ 122

Query: 121 HLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQ 150
           HLL KKN KR+ RLSK+  V RSDYDNVIGALPYLKVNR+
Sbjct: 123 HLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158

[Close]
BLAST of CSPI01G17980 vs. Swiss-Prot
Match: RL35_SYNE7 (50S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmI PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-09
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+   V  +D + V   L
Sbjct: 3   KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQPEVVHETDQERVKLML 62

Query: 142 PY 144
           PY
Sbjct: 63  PY 64

[Close]
BLAST of CSPI01G17980 vs. Swiss-Prot
Match: RL35_SYNP6 (50S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmI PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-09
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+   V  +D + V   L
Sbjct: 3   KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQPEVVHETDQERVKLML 62

Query: 142 PY 144
           PY
Sbjct: 63  PY 64

[Close]
BLAST of CSPI01G17980 vs. Swiss-Prot
Match: RL35_NOSS1 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpmI PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-09
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K   ++ + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of CSPI01G17980 vs. TrEMBL
Match: A0A0A0LYX0_CUCSA (50S ribosomal protein L35 OS=Cucumis sativus GN=Csa_1G257920 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.3e-76
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of CSPI01G17980 vs. TrEMBL
Match: W9SHK1_9ROSA (50S ribosomal protein L35 OS=Morus notabilis GN=L484_008496 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-42
Identity = 102/150 (68.00%), Postives = 116/150 (77.33%), Query Frame = 1 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASA+MAVSFG  +SP C R +  +S  SV +A  +K  SLKLSSSH IS F     ++ 
Sbjct: 1   MASATMAVSFGFSYSPFCPRRT-PLSRGSVRLAPFHKAASLKLSSSHCISAFSSVLPRRL 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
             +SP+       T+F+AKGYK KTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KR+
Sbjct: 61  CSVSPSPCSPRSLTIFSAKGYKRKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNNKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNR+A
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRKA 149

[Close]
BLAST of CSPI01G17980 vs. TrEMBL
Match: B9IMA0_POPTR (50S ribosomal protein L35 OS=Populus trichocarpa GN=POPTR_0018s11170g PE=3 SV=2)

HSP 1 Score: 175.3 bits (443), Expect = 5.8e-41
Identity = 105/151 (69.54%), Postives = 119/151 (78.81%), Query Frame = 1 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNS-LKLSSSHNISGFGFNSLQK 60
           MAS ++ +SF L+  PL S P+ RVS+ S  +A + KVNS L+LSS  NISG G  S  K
Sbjct: 1   MASLTV-LSFNLKSCPLHSFPT-RVSYGSAQLAPLIKVNSSLRLSSCRNISGSGSLSPLK 60

Query: 61  PSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120
           P  I+  +Q     TVFAAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQHLL KKN KR
Sbjct: 61  PCSITSLTQRFQSLTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKR 120

Query: 121 RLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           +LRLSKMHPVSRSDYDNVIGALPYLKVNR+A
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRKA 149

[Close]
BLAST of CSPI01G17980 vs. TrEMBL
Match: A5BPA4_VITVI (50S ribosomal protein L35 OS=Vitis vinifera GN=VIT_16s0115g00310 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-40
Identity = 104/158 (65.82%), Postives = 117/158 (74.05%), Query Frame = 1 

Query: 1   MASASMAVSFGLRFSPLCSRPS-FRVSHTSVGIASVNKVNSLKLSSSHNISGFG------ 60
           MASA++ +SF LR     S PS  RV +  V  +  ++  SLKLSSS NISGF       
Sbjct: 1   MASATLMLSFSLRLPSSFSSPSSVRVPNEVVQFSPFSRACSLKLSSSRNISGFAPILPLR 60

Query: 61  FNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLC 120
            ++L  PS   P+S      TV +AKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL 
Sbjct: 61  HSTLNSPSPSQPSS-----LTVVSAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLA 120

Query: 121 KKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           KKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNR+A+
Sbjct: 121 KKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNREAK 153

[Close]
BLAST of CSPI01G17980 vs. TrEMBL
Match: A9PBS9_POPTR (50S ribosomal protein L35 OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.9e-40
Identity = 105/151 (69.54%), Postives = 118/151 (78.15%), Query Frame = 1 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNS-LKLSSSHNISGFGFNSLQK 60
           MAS ++ +SF L+  PL S  S RVS+ S  +A +NKVNS L+LSS  NISG    S  K
Sbjct: 1   MASLTV-LSFNLKSCPLHSF-STRVSYGSAQLAPLNKVNSSLRLSSCRNISGSRSLSPLK 60

Query: 61  PSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120
           P  I+  +Q     TVFAAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQHLL KKN KR
Sbjct: 61  PCSITSLTQRFQSLTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKR 120

Query: 121 RLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           +LRLSKMHPVSRSDYDNVIGALPYLKVNR+A
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRKA 149

[Close]
BLAST of CSPI01G17980 vs. TAIR10
Match: AT2G24090.1 (AT2G24090.1 Ribosomal protein L35)

HSP 1 Score: 144.4 bits (363), Expect = 5.6e-35
Identity = 98/151 (64.90%), Postives = 107/151 (70.86%), Query Frame = 1 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MAS SMA S  + F       S +VS  S    SV+   SL  SSSH+ISG       K 
Sbjct: 1   MASLSMA-SVNVSFCHPLRSSSPKVSLRS----SVHFATSL--SSSHSISGLRAVLPLKI 60

Query: 61  SHI-SPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120
           S + SP SQ    FTVFA KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KR
Sbjct: 61  STVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKR 120

Query: 121 RLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           +LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 KLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]
BLAST of CSPI01G17980 vs. NCBI nr
Match: gi|449457865|ref|XP_004146668.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-75
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of CSPI01G17980 vs. NCBI nr
Match: gi|659086249|ref|XP_008443834.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 2.7e-71
Identity = 144/151 (95.36%), Postives = 146/151 (96.69%), Query Frame = 1 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVG+AS NKVNSLKLSSSHNISGFG N LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSK+HPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of CSPI01G17980 vs. NCBI nr
Match: gi|703155119|ref|XP_010111119.1| (50S ribosomal protein L35 [Morus notabilis])

HSP 1 Score: 180.6 bits (457), Expect = 2.0e-42
Identity = 102/150 (68.00%), Postives = 116/150 (77.33%), Query Frame = 1 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASA+MAVSFG  +SP C R +  +S  SV +A  +K  SLKLSSSH IS F     ++ 
Sbjct: 1   MASATMAVSFGFSYSPFCPRRT-PLSRGSVRLAPFHKAASLKLSSSHCISAFSSVLPRRL 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
             +SP+       T+F+AKGYK KTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KR+
Sbjct: 61  CSVSPSPCSPRSLTIFSAKGYKRKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNNKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNR+A
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRKA 149

[Close]
BLAST of CSPI01G17980 vs. NCBI nr
Match: gi|1009109751|ref|XP_015891890.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 180.3 bits (456), Expect = 2.6e-42
Identity = 101/151 (66.89%), Postives = 118/151 (78.15%), Query Frame = 1 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASA+M VSFGLR+SP C     R+S  S+ +A  NK +SL+LSSS +ISGF   SL+  
Sbjct: 1   MASATMTVSFGLRYSPFCPSSPTRLSRASLQLAPFNKQSSLRLSSSQSISGFP--SLKLS 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           +   P   +R+  TV +AKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQHLL KKN KR+
Sbjct: 61  TMTPPPPGLRS-LTVVSAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSK+HPV RSDYDNVI ALPYLKVNR A+
Sbjct: 121 LRLSKLHPVDRSDYDNVIKALPYLKVNRNAK 148

[Close]
BLAST of CSPI01G17980 vs. NCBI nr
Match: gi|470148804|ref|XP_004309940.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 178.7 bits (452), Expect = 7.6e-42
Identity = 102/150 (68.00%), Postives = 115/150 (76.67%), Query Frame = 1 

Query: 2   ASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPS 61
           A+ +M VSFGLR+SPLCS    RV   SV +A +N+ NSL+LSSSH ISGF      +  
Sbjct: 4   ATVTMTVSFGLRYSPLCS---CRVGQASVQLAQLNRPNSLRLSSSHTISGFRSLLPLRLC 63

Query: 62  HISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRL 121
            I+ T      FT+ A KGYKMKTHKAS+KRFRVTGRGKIVRRRA KQHLL KKNAKRR 
Sbjct: 64  TITSTPLRLRSFTIVAHKGYKMKTHKASSKRFRVTGRGKIVRRRARKQHLLVKKNAKRRN 123

Query: 122 RLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           RLSKMH VSRSDYDNVIGALPYLKVNR+A+
Sbjct: 124 RLSKMHAVSRSDYDNVIGALPYLKVNRKAE 150

The following BLAST results are available for this feature:
BLAST of CSPI01G17980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK35_ARATH9.9e-3464.9050S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana GN=RPL35 PE=2 S... [more]
RK35_SPIOL2.7e-3156.8850S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1[more]
RL35_SYNE73.8e-0954.8450S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmI P... [more]
RL35_SYNP63.8e-0954.8450S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / S... [more]
RL35_NOSS13.8e-0955.5650S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpmI PE... [more]
BLAST of CSPI01G17980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYX0_CUCSA7.3e-76100.0050S ribosomal protein L35 OS=Cucumis sativus GN=Csa_1G257920 PE=3 SV=1[more]
W9SHK1_9ROSA1.4e-4268.0050S ribosomal protein L35 OS=Morus notabilis GN=L484_008496 PE=3 SV=1[more]
B9IMA0_POPTR5.8e-4169.5450S ribosomal protein L35 OS=Populus trichocarpa GN=POPTR_0018s11170g PE=3 SV=2[more]
A5BPA4_VITVI1.7e-4065.8250S ribosomal protein L35 OS=Vitis vinifera GN=VIT_16s0115g00310 PE=3 SV=1[more]
A9PBS9_POPTR2.9e-4069.5450S ribosomal protein L35 OS=Populus trichocarpa PE=2 SV=1[more]
BLAST of CSPI01G17980 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G24090.15.6e-3564.90 Ribosomal protein L35[more]
BLAST of CSPI01G17980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457865|ref|XP_004146668.1|1.0e-75100.00PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis sativus][more]
gi|659086249|ref|XP_008443834.1|2.7e-7195.36PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo][more]
gi|703155119|ref|XP_010111119.1|2.0e-4268.0050S ribosomal protein L35 [Morus notabilis][more]
gi|1009109751|ref|XP_015891890.1|2.6e-4266.89PREDICTED: 50S ribosomal protein L35, chloroplastic [Ziziphus jujuba][more]
gi|470148804|ref|XP_004309940.1|7.6e-4268.00PREDICTED: 50S ribosomal protein L35, chloroplastic [Fragaria vesca subsp. vesca... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001706Ribosomal_L35_non-mt
IPR018265Ribosomal_L35_CS
IPR021137Ribosomal_L35
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006098 pentose-phosphate shunt
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0009507 chloroplast
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G17980.1CSPI01G17980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001706Ribosomal protein L35, non-mitochondrialPRINTSPR00064RIBOSOMALL35coord: 100..114
score: 2.0E-17coord: 82..99
score: 2.0E-17coord: 115..133
score: 2.0
IPR001706Ribosomal protein L35, non-mitochondrialHAMAPMF_00514Ribosomal_L35coord: 80..143
score: 15
IPR001706Ribosomal protein L35, non-mitochondrialTIGRFAMsTIGR00001TIGR00001coord: 81..143
score: 3.2
IPR018265Ribosomal protein L35, conserved sitePROSITEPS00936RIBOSOMAL_L35coord: 84..110
scor
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 81..137
score: 2.8
NoneNo IPR availablePANTHERPTHR33343FAMILY NOT NAMEDcoord: 32..151
score: 3.5
NoneNo IPR availableunknownSSF143034L35p-likecoord: 81..143
score: 2.49

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G17980Cla018755Watermelon (97103) v1cpiwmB086
CSPI01G17980Csa1G257920Cucumber (Chinese Long) v2cpicuB004
CSPI01G17980MELO3C010199Melon (DHL92) v3.5.1cpimeB057
CSPI01G17980ClCG06G012650Watermelon (Charleston Gray)cpiwcgB071
CSPI01G17980MELO3C010199.2Melon (DHL92) v3.6.1cpimedB051
CSPI01G17980CsaV3_1G029200Cucumber (Chinese Long) v3cpicucB000
CSPI01G17980Cla97C06G121870Watermelon (97103) v2cpiwmbB068
CSPI01G17980Bhi02G000659Wax gourdcpiwgoB099
CSPI01G17980Cucsa.170750Cucumber (Gy14) v1cgycpiB268
CSPI01G17980CmaCh10G004470Cucurbita maxima (Rimu)cmacpiB059
CSPI01G17980CmaCh11G004410Cucurbita maxima (Rimu)cmacpiB097
CSPI01G17980CmoCh11G004410Cucurbita moschata (Rifu)cmocpiB090
CSPI01G17980CmoCh10G004810Cucurbita moschata (Rifu)cmocpiB051
CSPI01G17980Cp4.1LG18g05810Cucurbita pepo (Zucchini)cpecpiB351
CSPI01G17980CsGy1G018050Cucumber (Gy14) v2cgybcpiB002
CSPI01G17980Carg14072Silver-seed gourdcarcpiB0539
CSPI01G17980Carg10014Silver-seed gourdcarcpiB0138
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G17980Cucumber (Chinese Long) v3cpicucB020
CSPI01G17980Wax gourdcpiwgoB006
CSPI01G17980Wild cucumber (PI 183967)cpicpiB006
CSPI01G17980Cucumber (Gy14) v1cgycpiB096
CSPI01G17980Cucurbita maxima (Rimu)cmacpiB164
CSPI01G17980Cucurbita moschata (Rifu)cmocpiB149
CSPI01G17980Cucumber (Chinese Long) v2cpicuB014
CSPI01G17980Melon (DHL92) v3.5.1cpimeB075
CSPI01G17980Cucurbita pepo (Zucchini)cpecpiB640
CSPI01G17980Bottle gourd (USVL1VR-Ls)cpilsiB010
CSPI01G17980Bottle gourd (USVL1VR-Ls)cpilsiB064
CSPI01G17980Melon (DHL92) v3.6.1cpimedB067
CSPI01G17980Cucumber (Gy14) v2cgybcpiB050
CSPI01G17980Silver-seed gourdcarcpiB0951