Carg10025 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10025
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription factor like
Location	Cucurbita_argyrosperma_scaffold_030 : 1039808 .. 1040857 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGTGTATACCCTTTAGGGTTTGGTGGTGGGACATTAACTCCATGTGCTTGCATGTGCTGTGTCTCTCTCTAAATGGCCCACCAATTCCCTCCTTTAACCACATAAATTGGTTTCTGCACATTCTTCTATTTCCCATGCTTCTTTCTCTCTCGGATCTCTAAATCTTCCCAACTAATAATCCTTTCTCTCATTAAACCACAAATTTCCCAGGTATGTTCTTTCTTTTTTTCTCATTTTTTTCATCAACTTTTCCATAATGTTCTATCTTTGATCCAATTTCCCATGACAATTCTTTGTTTTTTTGTTTTTAAATATTAGAATGCGCAATCCCAGTTGGTTGAAACGAGATTTTTTGAAGAAATGGCGGATGGGTCTTCAAATATACACAACCACCAACCGAAACATGACGGTCGCCGACAGAAAAAGGGCCATAAAGTTATCCGCTGATATTGCTTTGGCGTCCTCCAGAAACTGTGCCACTCGTTGGAGCCGAGCTGTCATCGCTGGCACCTCCGTTCACGATGGCAGCTTCCTGGTGGCTAACGGCGTATTGGGTCGTGCCGTATGCGAGAGAATCAAGGAAAGCAGTTCAAAAATCACGCGAAGTTCGTGGAGTAGTCGGAAGATTCTCAAACGGAGCCGCCGTGTGGGGCGGAGGAAAAAATGTAGGAAGCCGGCTGCTGAGTGGATTGCAAAAAGGTTGGTGCAAAAAAGAACAAGAACGCTTCGTGGGTTGGTTCCCGGAGGTGAATTTATGGATGAAGTTTCGTTAATTGAAGAAACCCTAGATTACATTTTGGCTCTTCAAACTCAGGTTGATGTCATGCGGTGTCTTGCAACGACTGCATACGTAGCGCCACCATCATTATGAGTATCCAAATTCATAGTTCTTTTTCGGCCAACATTGGTATGATGAATGGATGGTGAAAGTTATGGGCTTTTTTTTTTTTTAAACATATGTATAGCTAATTGGAAGCTAAATGTAGTGATAATTTGAAAACATGGTCTTGTACATATTAAATTTTATGTAAGTTAAGACATATA

mRNA sequence

ATGTATAGTGTATACCCTTTAGGAATGCGCAATCCCAGTTGGTTGAAACGAGATTTTTTGAAGAAATGGCGGATGGGTCTTCAAATATACACAACCACCAACCGAAACATGACGGTCGCCGACAGAAAAAGGGCCATAAAGTTATCCGCTGATATTGCTTTGGCGTCCTCCAGAAACTGTGCCACTCGTTGGAGCCGAGCTGTCATCGCTGGCACCTCCGTTCACGATGGCAGCTTCCTGGTGGCTAACGGCGTATTGGGTCGTGCCGTATGCGAGAGAATCAAGGAAAGCAGTTCAAAAATCACGCGAAGTTCGTGGAGTAGTCGGAAGATTCTCAAACGGAGCCGCCGTGTGGGGCGGAGGAAAAAATGTAGGAAGCCGGCTGCTGAGTGGATTGCAAAAAGGTTGGTGCAAAAAAGAACAAGAACGCTTCGTGGGTTGGTTCCCGGAGGTGAATTTATGGATGAAGTTTCGTTAATTGAAGAAACCCTAGATTACATTTTGGCTCTTCAAACTCAGGTTGATGTCATGCGGTGTCTTGCAACGACTGCATACGTAGCGCCACCATCATTATGAGTATCCAAATTCATAGTTCTTTTTCGGCCAACATTGGTATGATGAATGGATGGTGAAAGTTATGGGCTTTTTTTTTTTTTAAACATATGTATAGCTAATTGGAAGCTAAATGTAGTGATAATTTGAAAACATGGTCTTGTACATATTAAATTTTATGTAAGTTAAGACATATA

Coding sequence (CDS)

ATGTATAGTGTATACCCTTTAGGAATGCGCAATCCCAGTTGGTTGAAACGAGATTTTTTGAAGAAATGGCGGATGGGTCTTCAAATATACACAACCACCAACCGAAACATGACGGTCGCCGACAGAAAAAGGGCCATAAAGTTATCCGCTGATATTGCTTTGGCGTCCTCCAGAAACTGTGCCACTCGTTGGAGCCGAGCTGTCATCGCTGGCACCTCCGTTCACGATGGCAGCTTCCTGGTGGCTAACGGCGTATTGGGTCGTGCCGTATGCGAGAGAATCAAGGAAAGCAGTTCAAAAATCACGCGAAGTTCGTGGAGTAGTCGGAAGATTCTCAAACGGAGCCGCCGTGTGGGGCGGAGGAAAAAATGTAGGAAGCCGGCTGCTGAGTGGATTGCAAAAAGGTTGGTGCAAAAAAGAACAAGAACGCTTCGTGGGTTGGTTCCCGGAGGTGAATTTATGGATGAAGTTTCGTTAATTGAAGAAACCCTAGATTACATTTTGGCTCTTCAAACTCAGGTTGATGTCATGCGGTGTCTTGCAACGACTGCATACGTAGCGCCACCATCATTATGA

Protein sequence

MYSVYPLGMRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAVIAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPAAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAPPSL

Homology

[Close]

BLAST of Carg10025 vs. NCBI nr
Match: XP_022921880.1 (transcription factor IBH1-like 1 [Cucurbita moschata])

HSP 1 Score: 353.2 bits (905), Expect = 5.5e-94
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68
           MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 69  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPA 128
           IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPA
Sbjct: 61  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPA 120

Query: 129 AEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 188
           AEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP
Sbjct: 121 AEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180

Query: 189 PSL 192
           PSL
Sbjct: 181 PSL 183

[Close]

BLAST of Carg10025 vs. NCBI nr
Match: XP_022988593.1 (transcription factor IBH1-like 1 [Cucurbita maxima])

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68
           MRNPS LKRDFLKKW MGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 69  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPA 128
           IAGTSVHDGSFLVANG+LGRAVCERIK+SSSKITRSSWSS KILKRSRRVGRRKKCRKPA
Sbjct: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPA 120

Query: 129 AEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 188
           AEWIA+RLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP
Sbjct: 121 AEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180

Query: 189 PSL 192
           PSL
Sbjct: 181 PSL 183

[Close]

BLAST of Carg10025 vs. NCBI nr
Match: XP_023515816.1 (transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.1 bits (845), Expect = 5.0e-87
Identity = 174/183 (95.08%), Postives = 175/183 (95.63%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68
           M NP+ LKRDFLKKW MGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MSNPNSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 69  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPA 128
           IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSW S KILKRSRRVGRRKKCRK  
Sbjct: 61  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWCSGKILKRSRRVGRRKKCRKAG 120

Query: 129 AEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 188
           AEWIAKRLVQKRTR LRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP
Sbjct: 121 AEWIAKRLVQKRTRMLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180

Query: 189 PSL 192
           PSL
Sbjct: 181 PSL 183

[Close]

BLAST of Carg10025 vs. NCBI nr
Match: XP_022933891.1 (transcription factor IBH1-like 1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 240.0 bits (611), Expect = 6.8e-60
Identity = 134/183 (73.22%), Postives = 152/183 (83.06%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68
           MRNPS LKR+FLKKW MGL+IYTT+N+NMTV  RK AIKLSADIALASSRNCATRWS+A+
Sbjct: 1   MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 60

Query: 69  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGR-RKKCRKP 128
           IA TSV DGS LVA+ +LGR +       + KITR  WSS KI+KRSRRV R R+KC+KP
Sbjct: 61  IAATSVDDGSRLVADVLLGRTI-------NPKITRIMWSSGKIVKRSRRVQRMRRKCKKP 120

Query: 129 AAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVA 188
           AAE IAK+LV+KR + LRGLVPGGEFMDE+SLIEETLDYI ALQ QVDVMRCLA TAY+A
Sbjct: 121 AAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLA-TAYIA 175

Query: 189 PPS 191
             S
Sbjct: 181 SSS 175

[Close]

BLAST of Carg10025 vs. NCBI nr
Match: XP_008443801.1 (PREDICTED: uncharacterized protein LOC103487305 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 4.4e-59
Identity = 134/179 (74.86%), Postives = 152/179 (84.92%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68
           M+NP+ LK++FLKKW MGLQIYTTTN NMTVA+RK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNPNSLKQEFLKKWMMGLQIYTTTNENMTVAERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 69  IAGTSVHDGSFLVANGVLGRAVCERIKE-SSSKITRSSWSSRKILKRSRRVGRR----KK 128
           IA +SV + S LVANGVLGR +CER+K+ S+ KITRSSWSS KI+KRSRRV RR     K
Sbjct: 61  IARSSVDNRSCLVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRXXXXNK 120

Query: 129 CRKPAAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLAT 183
           C   AA  IA+RLVQ+RT+ LRGLVPGGEFMDE+SLIEETLDY+ ALQ QVDVMR LA+
Sbjct: 121 CM--AAVTIARRLVQRRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLAS 177

[Close]

BLAST of Carg10025 vs. TAIR10
Match: AT4G30410.2 (sequence-specific DNA binding transcription factors)

HSP 1 Score: 114.8 bits (286), Expect = 6.0e-26
Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68
           M+  S +  +FLKKW+MGLQI+  +  N +V +RK+AIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 69  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRS-RRVGRRKKCRKP 128
           I  T+  D +FLV   + G      I   + K+ + +   RKI++RS             
Sbjct: 61  IEKTATED-NFLVRQMLSGIKAETLI---NKKLPKKTVCHRKIVRRSXXXXXXXXXXXXX 120

Query: 129 AAEWIAKRLVQKRTRTLRGLVPGGEFM-DEVSLIEETLDYILALQTQVDVMRCLATTA 185
                AKRLV++RT+ LR +VPGGE M ++V L++ETLDYI++LQTQV+VMR +   A
Sbjct: 121 XXXXXAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDAA 174

[Close]

BLAST of Carg10025 vs. TAIR10
Match: AT5G57780.1 (EXPRESSED IN: 18 plant structures)

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-17
Identity = 64/176 (36.36%), Postives = 98/176 (55.68%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIY-TTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRA 68
           M   + +K++F+KKW   L +  ++    + V +RK AI+LS+D+A+A++RN +T WSRA
Sbjct: 2   MNTYNMVKQEFIKKWINTLHMLDSSIEHPLNVTERKNAIRLSSDLAMAAARNGSTVWSRA 61

Query: 69  VIAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSR-RVGRRKKCRK 128
           +I+                           S   T +   +R+ILK++R R+  R    +
Sbjct: 62  LIS--------------------------RSGNKTANKPMARRILKKARNRMKNRCNILR 121

Query: 129 PAAEWIAKRLVQKRTRTLRGLVPGGEFMDEVS-LIEETLDYILALQTQVDVMRCLA 182
               + AK  V+KRT  L+ LVPGGE +D+   LI ETLDYI+ L+ QVDVMR +A
Sbjct: 122 RNGNFTAKTWVRKRTDLLKSLVPGGELIDDKDYLIRETLDYIVYLRAQVDVMRTVA 151

[Close]

BLAST of Carg10025 vs. TAIR10
Match: AT1G09250.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-06
Identity = 49/162 (30.25%), Postives = 73/162 (45.06%), Query Frame = 0


Query: 31  TTTNRNMT---VADRKRAIKLSADIALASSRNCATRWSRAVIAGTSVHDGSFLVANGVLG 90
           +TT+ N T   V+   R I+ +AD  LA+S    TRWSRA++A                 
Sbjct: 69  STTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILA----------------S 128

Query: 91  RAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPAAEWIAKRLVQKRTRTLRGL 150
           R   +  K   +K +  +  SRK L  + R+      + PA        V+++ + L  L
Sbjct: 129 RVRAKLKKHRKAKKSTGNCKSRKGLTETNRI------KLPA--------VERKLKILGRL 188

Query: 151 VPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAPP 190
           VPG   +   +L++E  DYI AL+ QV  M  LA     A P
Sbjct: 189 VPGCRKVSVPNLLDEATDYIAALEMQVRAMEALAELLTAAAP 200

[Close]

BLAST of Carg10025 vs. TAIR10
Match: AT2G43060.1 (ILI1 binding bHLH 1)

HSP 1 Score: 45.1 bits (105), Expect = 5.8e-05
Identity = 45/140 (32.14%), Postives = 62/140 (44.29%), Query Frame = 0


Query: 42  RKRAIKLSADIALASSRNCATR-WSRAVIAGTSVHDGSFLVANGVLGRAVCERIKESSSK 101
           R R IK +A +++A +   ++R WSRA++                       R  +  +K
Sbjct: 44  RVRKIKKAAYVSMARAAGGSSRLWSRALL----------------------RRADKDDNK 103

Query: 102 ITRSSWSSRKILKRSRRVGRRKKCRKPAAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLI 161
           I R S    KI  + RR  +R    + AAE             LR LVPGG  M+   L+
Sbjct: 104 IVRFSRRKWKISSKRRRSNQRAPVVEEAAE------------RLRNLVPGGGGMETSKLM 149

Query: 162 EETLDYILALQTQVDVMRCL 181
           EET  YI  L  QV VM+CL
Sbjct: 164 EETAHYIKCLSMQVKVMQCL 149

[Close]

BLAST of Carg10025 vs. Swiss-Prot
Match: sp|Q9M0B9|IBL1_ARATH (Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68
           M+  S +  +FLKKW+MGLQI+  +  N +V +RK+AIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 69  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRS-RRVGRRKKCRKP 128
           I  T+  D +FLV   + G      I   + K+ + +   RKI++RS             
Sbjct: 61  IEKTATED-NFLVRQMLSGIKAETLI---NKKLPKKTVCHRKIVRRSXXXXXXXXXXXXX 120

Query: 129 AAEWIAKRLVQKRTRTLRGLVPGGEFM-DEVSLIEETLDYILALQTQVDVMRCLATTA 185
                AKRLV++RT+ LR +VPGGE M ++V L++ETLDYI++LQTQV+VMR +   A
Sbjct: 121 XXXXXAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDAA 174

[Close]

BLAST of Carg10025 vs. Swiss-Prot
Match: sp|O80482|BH149_ARATH (Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 49/162 (30.25%), Postives = 73/162 (45.06%), Query Frame = 0


Query: 31  TTTNRNMT---VADRKRAIKLSADIALASSRNCATRWSRAVIAGTSVHDGSFLVANGVLG 90
           +TT+ N T   V+   R I+ +AD  LA+S    TRWSRA++A                 
Sbjct: 69  STTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILA----------------S 128

Query: 91  RAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPAAEWIAKRLVQKRTRTLRGL 150
           R   +  K   +K +  +  SRK L  + R+      + PA        V+++ + L  L
Sbjct: 129 RVRAKLKKHRKAKKSTGNCKSRKGLTETNRI------KLPA--------VERKLKILGRL 188

Query: 151 VPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAPP 190
           VPG   +   +L++E  DYI AL+ QV  M  LA     A P
Sbjct: 189 VPGCRKVSVPNLLDEATDYIAALEMQVRAMEALAELLTAAAP 200

[Close]

BLAST of Carg10025 vs. TrEMBL
Match: tr|A0A1S3B8V1|A0A1S3B8V1_CUCME (uncharacterized protein LOC103487305 OS=Cucumis melo OX=3656 GN=LOC103487305 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.9e-59
Identity = 134/179 (74.86%), Postives = 152/179 (84.92%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68
           M+NP+ LK++FLKKW MGLQIYTTTN NMTVA+RK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNPNSLKQEFLKKWMMGLQIYTTTNENMTVAERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 69  IAGTSVHDGSFLVANGVLGRAVCERIKE-SSSKITRSSWSSRKILKRSRRVGRR----KK 128
           IA +SV + S LVANGVLGR +CER+K+ S+ KITRSSWSS KI+KRSRRV RR     K
Sbjct: 61  IARSSVDNRSCLVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRXXXXNK 120

Query: 129 CRKPAAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLAT 183
           C   AA  IA+RLVQ+RT+ LRGLVPGGEFMDE+SLIEETLDY+ ALQ QVDVMR LA+
Sbjct: 121 CM--AAVTIARRLVQRRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLAS 177

[Close]

BLAST of Carg10025 vs. TrEMBL
Match: tr|A0A0A0LWQ3|A0A0A0LWQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294080 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.9e-58
Identity = 131/177 (74.01%), Postives = 149/177 (84.18%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68
           M+N + LK++F KKW MGLQIYTTTN NMTV +RK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 69  IAGTSVHDGSFLVANGVLGRAVCERIKE-SSSKITRSSWSSRKILKRSRRVGRRKKCRKP 128
           IA +SV + S  VANGVLGR +CER+K+ S+ KITRSSWSS KI+KRSRRV RR++ R  
Sbjct: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 129 --AAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLAT 183
             AA  IA+RLVQKRT+ LRGLVPGGEFMDE+SLIEETLDY+ ALQ QVDVMR LAT
Sbjct: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLAT 177

[Close]

BLAST of Carg10025 vs. TrEMBL
Match: tr|A0A2C9ULV2|A0A2C9ULV2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G147700 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.9e-35
Identity = 89/173 (51.45%), Postives = 127/173 (73.41%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68
           MR P  LK++FLKKW +GLQ+  +TN+NM++ +RK+AIKLSADIA+AS+RN  T WSRA+
Sbjct: 1   MRAPQSLKQEFLKKWMVGLQLCESTNQNMSILERKKAIKLSADIAMASTRNGMTCWSRAL 60

Query: 69  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPA 128
           +A TS   G+ ++ + +L  +  E++K   + I R     +KIL++S R  R+ +  +  
Sbjct: 61  VAKTSTDFGNKVLVDNILLASQSEKLKNKRTIIRR-----KKILRKSHR-ARKARGGRVV 120

Query: 129 AEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLA 182
           A  +AK +V+KRT+ L+ LVPGGEFMD+VSLIEETLDYI++L+ QVDVMR LA
Sbjct: 121 ARSLAKEMVKKRTQVLKSLVPGGEFMDDVSLIEETLDYIVSLRAQVDVMRTLA 167

[Close]

BLAST of Carg10025 vs. TrEMBL
Match: tr|A0A2R6Q8T7|A0A2R6Q8T7_ACTCH (Transcription factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc20159 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 90/176 (51.14%), Postives = 129/176 (73.30%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68
           MRNPS LK++ LKKW MGLQI +++ + MT+ +RK+AIKLSADIA+AS+RN +  WSRA+
Sbjct: 1   MRNPSSLKQEILKKWVMGLQICSSSTKEMTILERKKAIKLSADIAMASARNASNYWSRAL 60

Query: 69  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPA 128
           I+  S  D +  + + +LG    E+IK+ SS +   S   +KI+ RS+++ +++      
Sbjct: 61  ISNASKKDENKALLDHILG-CDLEKIKKKSSIV---SIKRKKIVLRSKKILKKRVKNIGV 120

Query: 129 AEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTA 185
           A +IAKRLV+KRT+ L+ LVPGGE MDE+SL+EETLDYI++L+ QVDVMR LA  +
Sbjct: 121 ASYIAKRLVKKRTQLLKRLVPGGESMDELSLMEETLDYIVSLRAQVDVMRHLANAS 172

[Close]

BLAST of Carg10025 vs. TrEMBL
Match: tr|A0A2N9EMZ2|A0A2N9EMZ2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3841 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.2e-34
Identity = 97/181 (53.59%), Postives = 128/181 (70.72%), Query Frame = 0


Query: 9   MRNPSWLKRDFLKKWRMGLQIYTTTN-RNMTVADRKRAIKLSADIALASSRNCATRWSRA 68
           MR+PS LK++FLKKW MGLQ  T+++ + MT+ +RK+AIKLSAD+A+AS+RN  T WSRA
Sbjct: 1   MRHPSSLKQEFLKKWIMGLQRCTSSSKKTMTILERKKAIKLSADLAMASARNGTTCWSRA 60

Query: 69  VIAGTSVHDGSFLVANGVLGRAVCERIKESSSK---ITRSSWSSRKILKRS---RRVGRR 128
           +IA  S    S ++A  +LG    E +K++S+           S+KILKRS   RRV + 
Sbjct: 61  LIANASRDHDSRILAEKILG-PESESLKKASTMSLIFNNRRIRSKKILKRSCSVRRVRKS 120

Query: 129 KKCRKPAAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLA 183
              +K  A  IAKRLV+KRT  L+ LVPGGE+MDE+SLIEETLDYI  L+ QVDVMRC+A
Sbjct: 121 LPHQKVFANSIAKRLVKKRTHILKSLVPGGEYMDEISLIEETLDYIAYLRAQVDVMRCVA 180

The following BLAST results are available for this feature:

BLAST of Carg10025 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921880.1	5.5e-94	100.00	transcription factor IBH1-like 1 [Cucurbita moschata]	[more]
XP_022988593.1	1.1e-89	96.72	transcription factor IBH1-like 1 [Cucurbita maxima]	[more]
XP_023515816.1	5.0e-87	95.08	transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022933891.1	6.8e-60	73.22	transcription factor IBH1-like 1 isoform X2 [Cucurbita moschata]	[more]
XP_008443801.1	4.4e-59	74.86	PREDICTED: uncharacterized protein LOC103487305 [Cucumis melo]	[more]

BLAST of Carg10025 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30410.2	6.0e-26	43.82	sequence-specific DNA binding transcription factors	[more]
AT5G57780.1	2.3e-17	36.36	EXPRESSED IN: 18 plant structures	[more]
AT1G09250.1	6.9e-06	30.25	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G43060.1	5.8e-05	32.14	ILI1 binding bHLH 1	[more]

BLAST of Carg10025 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M0B9\|IBL1_ARATH	1.1e-24	43.82	Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV...	[more]
sp\|O80482\|BH149_ARATH	1.2e-04	30.25	Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=...	[more]

BLAST of Carg10025 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B8V1\|A0A1S3B8V1_CUCME	2.9e-59	74.86	uncharacterized protein LOC103487305 OS=Cucumis melo OX=3656 GN=LOC103487305 PE=...	[more]
tr\|A0A0A0LWQ3\|A0A0A0LWQ3_CUCSA	1.9e-58	74.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294080 PE=4 SV=1	[more]
tr\|A0A2C9ULV2\|A0A2C9ULV2_MANES	2.9e-35	51.45	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G147700 PE=4 SV=...	[more]
tr\|A0A2R6Q8T7\|A0A2R6Q8T7_ACTCH	1.5e-34	51.14	Transcription factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE...	[more]
tr\|A0A2N9EMZ2\|A0A2N9EMZ2_FAGSY	4.2e-34	53.59	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3841 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036638	HLH_DNA-bd_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10025-RA	Carg10025-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF5	SUBFAMILY NOT NAMED	coord: 15..183
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 15..183
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 139..183

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10025	Cla018780	Watermelon (97103) v1	carwmB0126
Carg10025	Csa2G047790	Cucumber (Chinese Long) v2	carcuB0140
Carg10025	Csa1G294080	Cucumber (Chinese Long) v2	carcuB0133
Carg10025	MELO3C010170	Melon (DHL92) v3.5.1	carmeB0131
Carg10025	ClCG06G012890	Watermelon (Charleston Gray)	carwcgB0125
Carg10025	CSPI02G05530	Wild cucumber (PI 183967)	carcpiB0144
Carg10025	CSPI01G18260	Wild cucumber (PI 183967)	carcpiB0138
Carg10025	Cucsa.089810	Cucumber (Gy14) v1	carcgyB0151
Carg10025	CmaCh11G004260	Cucurbita maxima (Rimu)	carcmaB0169
Carg10025	CmaCh10G004330	Cucurbita maxima (Rimu)	carcmaB0166
Carg10025	CmoCh11G004260	Cucurbita moschata (Rifu)	carcmoB0175
Carg10025	CmoCh10G004630	Cucurbita moschata (Rifu)	carcmoB0172
Carg10025	Lsi11G007180	Bottle gourd (USVL1VR-Ls)	carlsiB112
Carg10025	Cp4.1LG04g12680	Cucurbita pepo (Zucchini)	carcpeB0186
Carg10025	Cp4.1LG18g05890	Cucurbita pepo (Zucchini)	carcpeB0185
Carg10025	CsGy1G018320	Cucumber (Gy14) v2	carcgybB0132
Carg10025	CsGy2G005670	Cucumber (Gy14) v2	carcgybB0138
Carg10025	MELO3C010170.2	Melon (DHL92) v3.6.1	carmedB0135
Carg10025	CsaV3_2G007890	Cucumber (Chinese Long) v3	carcucB0148
Carg10025	CsaV3_1G029460	Cucumber (Chinese Long) v3	carcucB0142
Carg10025	Cla97C06G122170	Watermelon (97103) v2	carwmbB0133
Carg10025	Bhi06G001184	Wax gourd	carwgoB0156
Carg10025	Bhi02G000631	Wax gourd	carwgoB0165

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg10025	Carg14055	Silver-seed gourd	carcarB151

The following block(s) are covering this gene:

None