CsaV3_7G029380 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G029380
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 18599361 .. 18599895 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACAGGTTTCAAGCTTTTCTATACCCTTTTCTTAGTGTTGGTCTGCTAATATTGTGCCAAGGTAGGTGCCACTAAAAACGTCGATGGCTTTTTCGACGACTATGATCGTGGGGGCGACTATGATGGATCATTTGGATCAGGTGGTGTTGGAGTTCTTACAGGCAAGAAAGATTGACACCACATCAGTTATAGAAACGACCAACCCTCCAGAATTGGCATCAAGTATTGCCCCCGTCAAGTTTGAAGTTCCAATTAATGCGGGTGACGAAGGTTTGGTGTTTGGTTTTGGAAAAATCAAGAACATTGGGAGTGAAGTTATTTATAAGGATCACGTAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTCTGGAATAAATAATGGAAAGATCAAAGATGGTGGTAAAAATGGTGTAAAGGAGCCAAGGGAGAATTGTTGGATACAATATCAAAATTGGGTTAATGAGCAATGACATTAAATTCACTAGTGATGGGAATCAAATCAGACATCATACCCTTTCTCATTAA

mRNA sequence

ATGGCTTTTTCGACGACTATGATCGTGGGGGCGACTATGATGGATCATTTGGATCAGGTGGTGTTGGAGTTCTTACAGGCAAGAAAGATTGACACCACATCAGTTATAGAAACGACCAACCCTCCAGAATTGGCATCAAGTATTGCCCCCGTCAAGTTTGAAGTTCCAATTAATGCGGGTGACGAAGGTTTGGTGTTTGGTTTTGGAAAAATCAAGAACATTGGGAGTGAAGTTATTTATAAGGATCACGTAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTCTGGAATAA

Coding sequence (CDS)

ATGGCTTTTTCGACGACTATGATCGTGGGGGCGACTATGATGGATCATTTGGATCAGGTGGTGTTGGAGTTCTTACAGGCAAGAAAGATTGACACCACATCAGTTATAGAAACGACCAACCCTCCAGAATTGGCATCAAGTATTGCCCCCGTCAAGTTTGAAGTTCCAATTAATGCGGGTGACGAAGGTTTGGTGTTTGGTTTTGGAAAAATCAAGAACATTGGGAGTGAAGTTATTTATAAGGATCACGTAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTCTGGAATAA

Protein sequence

MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAGDEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE
Homology
[Close]
BLAST of CsaV3_7G029380 vs. NCBI nr
Match: KGN44951.1 (hypothetical protein Csa_7G398130 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 8.4e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60
          MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG
Sbjct: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60

Query: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 99
          DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE
Sbjct: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 98

[Close]
BLAST of CsaV3_7G029380 vs. TrEMBL
Match: tr|A0A0A0KAY1|A0A0A0KAY1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398130 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.6e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60
          MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG
Sbjct: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60

Query: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 99
          DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE
Sbjct: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 98

The following BLAST results are available for this feature:
BLAST of CsaV3_7G029380 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44951.18.4e-46100.00hypothetical protein Csa_7G398130 [Cucumis sativus][more]
BLAST of CsaV3_7G029380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G029380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G029380 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KAY1|A0A0A0KAY1_CUCSA5.6e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398130 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G029380.1CsaV3_7G029380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G029380CSPI07G17580Wild cucumber (PI 183967)cpicucB414
CsaV3_7G029380MELO3C015990Melon (DHL92) v3.5.1cucmeB550
CsaV3_7G029380MELO3C015990.2Melon (DHL92) v3.6.1cucmedB538
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G029380Cucumber (Chinese Long) v3cuccucB185
CsaV3_7G029380Silver-seed gourdcarcucB0128
CsaV3_7G029380Silver-seed gourdcarcucB0601
CsaV3_7G029380Silver-seed gourdcarcucB0858
CsaV3_7G029380Cucumber (Gy14) v2cgybcucB195
CsaV3_7G029380Cucumber (Gy14) v2cgybcucB347
CsaV3_7G029380Cucumber (Gy14) v1cgycucB108
CsaV3_7G029380Cucumber (Gy14) v1cgycucB330
CsaV3_7G029380Cucurbita maxima (Rimu)cmacucB0462
CsaV3_7G029380Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G029380Cucurbita moschata (Rifu)cmocucB0455
CsaV3_7G029380Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G029380Cucurbita pepo (Zucchini)cpecucB0188
CsaV3_7G029380Cucurbita pepo (Zucchini)cpecucB0422
CsaV3_7G029380Wild cucumber (PI 183967)cpicucB246
CsaV3_7G029380Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G029380Bottle gourd (USVL1VR-Ls)cuclsiB550
CsaV3_7G029380Melon (DHL92) v3.5.1cucmeB584
CsaV3_7G029380Melon (DHL92) v3.6.1cucmedB571
CsaV3_7G029380Watermelon (Charleston Gray)cucwcgB541
CsaV3_7G029380Watermelon (Charleston Gray)cucwcgB548
CsaV3_7G029380Watermelon (Charleston Gray)cucwcgB555
CsaV3_7G029380Watermelon (97103) v1cucwmB584
CsaV3_7G029380Watermelon (97103) v1cucwmB593
CsaV3_7G029380Watermelon (97103) v1cucwmB601
CsaV3_7G029380Watermelon (97103) v2cucwmbB536
CsaV3_7G029380Watermelon (97103) v2cucwmbB587
CsaV3_7G029380Watermelon (97103) v2cucwmbB594
CsaV3_7G029380Wax gourdcucwgoB672
CsaV3_7G029380Wax gourdcucwgoB716