MELO3C015990.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015990.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 32304353 .. 32304842 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCAACACAATTTTCTTCCTTGATTCTCATTTGTGATAACAGCTTGTGCCCTTCAACTACCATGGCCATGACAACAGGTTTCAAGGTTTTCCATATCCTTTTGTTAATGTTGGTCTGCCAATGTTATGCCAAGGTAGATACCAAACAAAAAGTCAATGGCTTTTTCGACGACTATGATCGTGGTGACTATGATAGATCATTTGGATCAGGTGGTGTTGGTGTTCTTTCGGGCAAGATTGGCACCACATTAATTCTAGATATGATCAACCCTCCAAAATTGGCACCAATCGGATCTAAAGTTCCAATAAATGCAGGTGACGAAGGCTCTGTTTTTGGTATGGGAAAAACTAAGAACACCGAAGGTGAAGTTGATTCTAAGGATCTAGAAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTGACAATGGAATAAATAATCGAAAGATCAAAGATGGGATTGTTTCAACTTTCAAGAGATGGTAA

mRNA sequence

AAACCCAACACAATTTTCTTCCTTGATTCTCATTTGTGATAACAGCTTGTGCCCTTCAACTACCATGGCCATGACAACAGGTTTCAAGGTTTTCCATATCCTTTTGTTAATGTTGGTCTGCCAATGTTATGCCAAGGTAGATACCAAACAAAAAGTCAATGGCTTTTTCGACGACTATGATCGTGGTGACTATGATAGATCATTTGGATCAGGTGGTGTTGGTGTTCTTTCGGGCAAGATTGGCACCACATTAATTCTAGATATGATCAACCCTCCAAAATTGGCACCAATCGGATCTAAAGTTCCAATAAATGCAGGTGACGAAGGCTCTGTTTTTGGTATGGGAAAAACTAAGAACACCGAAGGTGAAGTTGATTCTAAGGATCTAGAAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTGACAATGGAATAAATAATCGAAAGATCAAAGATGGGATTGTTTCAACTTTCAAGAGATGGTAA

Coding sequence (CDS)

ATGGCCATGACAACAGGTTTCAAGGTTTTCCATATCCTTTTGTTAATGTTGGTCTGCCAATGTTATGCCAAGGTAGATACCAAACAAAAAGTCAATGGCTTTTTCGACGACTATGATCGTGGTGACTATGATAGATCATTTGGATCAGGTGGTGTTGGTGTTCTTTCGGGCAAGATTGGCACCACATTAATTCTAGATATGATCAACCCTCCAAAATTGGCACCAATCGGATCTAAAGTTCCAATAAATGCAGGTGACGAAGGCTCTGTTTTTGGTATGGGAAAAACTAAGAACACCGAAGGTGAAGTTGATTCTAAGGATCTAGAAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTGACAATGGAATAAATAATCGAAAGATCAAAGATGGGATTGTTTCAACTTTCAAGAGATGGTAA

Protein sequence

MAMTTGFKVFHILLLMLVCQCYAKVDTKQKVNGFFDDYDRGDYDRSFGSGGVGVLSGKIGTTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEVDSKDLEVNLKNVGRIDVSDNGINNRKIKDGIVSTFKRW

Homology

[Close]

BLAST of MELO3C015990.2 vs. NCBI nr
Match: KGN44951.1 (hypothetical protein Csa_7G398130 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 9.6e-11
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 58  KIGTTLILDMINPPKL----APIGSKVPINAGDEGSVFGMGKTKNTEGEVDSKDLEVNLK 117
           KI TT +++  NPP+L    AP+  +VPINAGDEG VFG GK KN   EV  KD  VNLK
Sbjct: 29  KIDTTSVIETTNPPELASSIAPVKFEVPINAGDEGLVFGFGKIKNIGSEVIYKDHVVNLK 88

Query: 118 NVGRIDVS 122
           NVGRIDVS
Sbjct: 89  NVGRIDVS 96

[Close]

BLAST of MELO3C015990.2 vs. NCBI nr
Match: KGN44950.1 (hypothetical protein Csa_7G398120 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 4.9e-07
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MAMTTGFKVFHILLLMLVCQCYAKVD-TKQKVNGFFDDYDRGDYDRSFGSGGVGVLSG-K 60
           M++  G K+FH +LLML  Q  AKVD T + V GFF D++ G    SFGSGG G++ G K
Sbjct: 1   MSIAIGSKLFHTVLLMLAWQYCAKVDATFKDVTGFF-DFNLG----SFGSGGAGIMGGTK 60

Query: 61  IGTTLILDMINPPKLAPIGSKVPINAGDEG-SVFGMGKTKNTEGEVDSKD--LEVNLKNV 120
            G +        P +AP+G   P N  D G S F    +KN  G VD  +   ++NLK  
Sbjct: 61  NGGSPANAPEMAPGIAPVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSNGAHKLNLKGS 120

[Close]

BLAST of MELO3C015990.2 vs. NCBI nr
Match: XP_011659777.1 (PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 4.9e-07
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MAMTTGFKVFHILLLMLVCQCYAKVD-TKQKVNGFFDDYDRGDYDRSFGSGGVGVLSG-K 60
           M++  G K+FH +LLML  Q  AKVD T + V GFF D++ G    SFGSGG G++ G K
Sbjct: 1   MSIAIGSKLFHTVLLMLAWQYCAKVDATFKDVTGFF-DFNLG----SFGSGGAGIMGGTK 60

Query: 61  IGTTLILDMINPPKLAPIGSKVPINAGDEG-SVFGMGKTKNTEGEVDSKD--LEVNLKNV 120
            G +        P +AP+G   P N  D G S F    +KN  G VD  +   ++NLK  
Sbjct: 61  NGGSPANAPEMAPGIAPVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSNGAHKLNLKGS 120

[Close]

BLAST of MELO3C015990.2 vs. TrEMBL
Match: tr|A0A0A0KAY1|A0A0A0KAY1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398130 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.3e-11
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 58  KIGTTLILDMINPPKL----APIGSKVPINAGDEGSVFGMGKTKNTEGEVDSKDLEVNLK 117
           KI TT +++  NPP+L    AP+  +VPINAGDEG VFG GK KN   EV  KD  VNLK
Sbjct: 29  KIDTTSVIETTNPPELASSIAPVKFEVPINAGDEGLVFGFGKIKNIGSEVIYKDHVVNLK 88

Query: 118 NVGRIDVS 122
           NVGRIDVS
Sbjct: 89  NVGRIDVS 96

[Close]

BLAST of MELO3C015990.2 vs. TrEMBL
Match: tr|A0A0A0K5G8|A0A0A0K5G8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MAMTTGFKVFHILLLMLVCQCYAKVD-TKQKVNGFFDDYDRGDYDRSFGSGGVGVLSG-K 60
           M++  G K+FH +LLML  Q  AKVD T + V GFF D++ G    SFGSGG G++ G K
Sbjct: 1   MSIAIGSKLFHTVLLMLAWQYCAKVDATFKDVTGFF-DFNLG----SFGSGGAGIMGGTK 60

Query: 61  IGTTLILDMINPPKLAPIGSKVPINAGDEG-SVFGMGKTKNTEGEVDSKD--LEVNLKNV 120
            G +        P +AP+G   P N  D G S F    +KN  G VD  +   ++NLK  
Sbjct: 61  NGGSPANAPEMAPGIAPVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSNGAHKLNLKGS 120

The following BLAST results are available for this feature:

BLAST of MELO3C015990.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44951.1	9.6e-11	61.76	hypothetical protein Csa_7G398130 [Cucumis sativus]	[more]
KGN44950.1	4.9e-07	40.80	hypothetical protein Csa_7G398120 [Cucumis sativus]	[more]
XP_011659777.1	4.9e-07	40.80	PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis sativus]	[more]

BLAST of MELO3C015990.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015990.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015990.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAY1\|A0A0A0KAY1_CUCSA	6.3e-11	61.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398130 PE=4 SV=1	[more]
tr\|A0A0A0K5G8\|A0A0A0K5G8_CUCSA	3.3e-07	40.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015990.2.1	MELO3C015990.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015990.2	Csa7G398130	Cucumber (Chinese Long) v2	cumedB511
MELO3C015990.2	CSPI07G17580	Wild cucumber (PI 183967)	cpimedB525
MELO3C015990.2	Bhi09G000726	Wax gourd	medwgoB255
MELO3C015990.2	CsaV3_7G029380	Cucumber (Chinese Long) v3	cucmedB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015990.2	Cucumber (Gy14) v2	cgybmedB467
MELO3C015990.2	Cucumber (Gy14) v1	cgymedB368
MELO3C015990.2	Cucurbita maxima (Rimu)	cmamedB373
MELO3C015990.2	Cucurbita maxima (Rimu)	cmamedB930
MELO3C015990.2	Cucurbita moschata (Rifu)	cmomedB359
MELO3C015990.2	Cucurbita moschata (Rifu)	cmomedB920
MELO3C015990.2	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C015990.2	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C015990.2	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C015990.2	Watermelon (Charleston Gray)	medwcgB155
MELO3C015990.2	Watermelon (Charleston Gray)	medwcgB178
MELO3C015990.2	Watermelon (97103) v1	medwmB181
MELO3C015990.2	Watermelon (97103) v1	medwmB206
MELO3C015990.2	Silver-seed gourd	carmedB0112
MELO3C015990.2	Silver-seed gourd	carmedB0572
MELO3C015990.2	Watermelon (97103) v2	medwmbB194
MELO3C015990.2	Watermelon (97103) v2	medwmbB218