CsaV3_7G029380.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G029380.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 18599361 .. 18599895 (+)
Sequence length297
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACAGGTTTCAAGCTTTTCTATACCCTTTTCTTAGTGTTGGTCTGCTAATATTGTGCCAAGGTAGGTGCCACTAAAAACGTCGATGGCTTTTTCGACGACTATGATCGTGGGGGCGACTATGATGGATCATTTGGATCAGGTGGTGTTGGAGTTCTTACAGGCAAGAAAGATTGACACCACATCAGTTATAGAAACGACCAACCCTCCAGAATTGGCATCAAGTATTGCCCCCGTCAAGTTTGAAGTTCCAATTAATGCGGGTGACGAAGGTTTGGTGTTTGGTTTTGGAAAAATCAAGAACATTGGGAGTGAAGTTATTTATAAGGATCACGTAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTCTGGAATAAATAATGGAAAGATCAAAGATGGTGGTAAAAATGGTGTAAAGGAGCCAAGGGAGAATTGTTGGATACAATATCAAAATTGGGTTAATGAGCAATGACATTAAATTCACTAGTGATGGGAATCAAATCAGACATCATACCCTTTCTCATTAA

mRNA sequence

ATGGCTTTTTCGACGACTATGATCGTGGGGGCGACTATGATGGATCATTTGGATCAGGTGGTGTTGGAGTTCTTACAGGCAAGAAAGATTGACACCACATCAGTTATAGAAACGACCAACCCTCCAGAATTGGCATCAAGTATTGCCCCCGTCAAGTTTGAAGTTCCAATTAATGCGGGTGACGAAGGTTTGGTGTTTGGTTTTGGAAAAATCAAGAACATTGGGAGTGAAGTTATTTATAAGGATCACGTAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTCTGGAATAA

Coding sequence (CDS)

ATGGCTTTTTCGACGACTATGATCGTGGGGGCGACTATGATGGATCATTTGGATCAGGTGGTGTTGGAGTTCTTACAGGCAAGAAAGATTGACACCACATCAGTTATAGAAACGACCAACCCTCCAGAATTGGCATCAAGTATTGCCCCCGTCAAGTTTGAAGTTCCAATTAATGCGGGTGACGAAGGTTTGGTGTTTGGTTTTGGAAAAATCAAGAACATTGGGAGTGAAGTTATTTATAAGGATCACGTAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTCTGGAATAA

Protein sequence

MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAGDEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE
Homology
[Close]
BLAST of CsaV3_7G029380.1 vs. NCBI nr
Match: KGN44951.1 (hypothetical protein Csa_7G398130 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 8.4e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60
          MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG
Sbjct: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60

Query: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 99
          DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE
Sbjct: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 98

[Close]
BLAST of CsaV3_7G029380.1 vs. TrEMBL
Match: tr|A0A0A0KAY1|A0A0A0KAY1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398130 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.6e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60
          MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG
Sbjct: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60

Query: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 99
          DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE
Sbjct: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 98

The following BLAST results are available for this feature:
BLAST of CsaV3_7G029380.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44951.18.4e-46100.00hypothetical protein Csa_7G398130 [Cucumis sativus][more]
BLAST of CsaV3_7G029380.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G029380.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G029380.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KAY1|A0A0A0KAY1_CUCSA5.6e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398130 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G029380CsaV3_7G029380gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G029380.1.exon1CsaV3_7G029380.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G029380.1.cds1CsaV3_7G029380.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G029380.1CsaV3_7G029380.1-proteinpolypeptide