CsaV3_4G037120 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTCAATCTCGAGCTTCCATCTTCTTCATTCGATCCTTTCTGCAGTCGGAATTCGGTGATCAGTTGAAAGTGCAGAAGCCAATTATGGGAGGCGGTGGACATGGAGCTGGAACTACTTTCAAGGGCGTGACCATACACCCGCCAAAGCGATGGCACACCGTCACCGGCAAGGGACTGTGCGCCGTTATGTGGTATAAACCCTAGCTTCATTAGTTTCCGATCGACAAATTCTATTGAAGGAAACTAAATTTGATTTTCTCTTTTCAGCCAAATTGCCCCATAGTTAATTTCTTTACTTTCTTTCTCTGTTTTACAAGTCCTGCGTCTAGTCCGATCTGTCCTCATCGCATTATTCCAAATAAACGCATCGCGATCGAGTGGAGTTACAAGTTTTAATATTATCTTGATGCCAGATGCTATATTTGAGTTCATCGTCTCGTATGCAATTTGATGTTGAGTGGAAATTAAAAGAGCTTCAGAATCTGTAGGATTGACTATTGAGAAATTGGCATCTGGGTATTGACCAGATTTTTTATGACTGTCTTTCAGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGTAAAAATCACTGTTCCCTTAGTCGTAAATTACATTTCTACTTATTTTTGGTTAAAATCTCTAGATTTTCTGGCTGAAGTTCTTGAGGATATACATGTTAGAGGGCATCTTTTGGAGCGATTTTAAAATGGTTAAAATCATTTAGTTGTTTTCAAATTCAGTATGAAAAATTCAATTAGAAGTGTAAAATTGAACATTAAATTGATTTTAGGTGATTAAAGCTTAACTTTATGTTTCAAAGTTATTTTAAATATGACAAAAAGTGACGTTAACCATTTTCTGAACACTTGGTTGCCATTTTTAGCTTACATTGTATGTATTTTCTATTACAGAAAATCTTACTTTTGTAATATTTGTTACGATCAGGGCTGGAGACATCCATGGGAAGGTCATGGTCATGGTGATCATGGAAATGAGCACTAGGTACTGTTTTTATGATTTACCTCTCTTTCCAAATTTCCCCAATTAATTATCTGTTTTTATAGAGAGAAAAAGTCAAAACAAAGTGTGTCCTAGCTTTCTGATATAATTACAACACTGAACTATTAGCCACTTGACATCAGGTAATATGAGCGCTATCAGCTATGGGAACTTTTTTTCTTTGATTGGAGTACATTTCTATTGATAAGCTTTCCAGTTTACTTGTAGGCTTCCTGCTAATGGTGGGCGAAGGGGAAATGGCAAGGCCTCAGTTGCAGGTTCTCTATTTGAATGTTCAGAGTACCATATTTGCTAAGTTCTGTTCAAATAAGGATATTGTGATAGCCAAATGGATATAAACACCACTTCATCATTTTTATTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTAATTTGTGTTCAATCACCGCTGTTGTTGAGTTGAAGCAAAGATCAATTCCCTATTTCTGAATATAGGCTGTACTTTTATTTCACTATGTCTTTTGCATGGCGCATACCTTTCTTTTAAACTAAGGTTGTTCCATTTGGATAATTTGATCTGCTCAAACTGAAATTCATGTACCAATGGTGATGAAGTATTAGTGAATTGCTACCCTTGAATCTAGTGTCACAACAATGGGATTTTATTTGCCATGAGACAGTTACAGGCATTGTATTTGCATAATTCCTCTAGAAACTTAACTGAAGTGATACGAAGAATGCATA ATGGGAGGCGGTGGACATGGAGCTGGAACTACTTTCAAGGGCGTGACCATACACCCGCCAAAGCGATGGCACACCGTCACCGGCAAGGGACTGTGCGCCGTTATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGTCATGGTCATGGTGATCATGGAAATGAGCACTAG ATGGGAGGCGGTGGACATGGAGCTGGAACTACTTTCAAGGGCGTGACCATACACCCGCCAAAGCGATGGCACACCGTCACCGGCAAGGGACTGTGCGCCGTTATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGTCATGGTCATGGTGATCATGGAAATGAGCACTAG MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHGDHGNEH
BLAST of CsaV3_4G037120 vs. NCBI nr
Match: XP_004145533.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus] >XP_011654263.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus] >KGN55485.1 hypothetical protein Csa_4G653460 [Cucumis sativus]) HSP 1 Score: 162.9 bits (411), Expect = 3.9e-37 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of CsaV3_4G037120 vs. NCBI nr
Match: XP_008452937.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo] >XP_008452938.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo]) HSP 1 Score: 149.8 bits (377), Expect = 3.4e-33 Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0
BLAST of CsaV3_4G037120 vs. NCBI nr
Match: XP_022936519.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata] >XP_022936520.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata] >XP_022975909.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita maxima] >XP_022975910.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita maxima] >XP_023534987.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita pepo subsp. pepo] >XP_023534988.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 146.0 bits (367), Expect = 4.9e-32 Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 0
BLAST of CsaV3_4G037120 vs. NCBI nr
Match: XP_022132798.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Momordica charantia] >XP_022132809.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Momordica charantia] >XP_022132821.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Momordica charantia]) HSP 1 Score: 142.5 bits (358), Expect = 5.4e-31 Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0
BLAST of CsaV3_4G037120 vs. NCBI nr
Match: XP_002510641.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Ricinus communis] >EEF52828.1 conserved hypothetical protein [Ricinus communis]) HSP 1 Score: 139.0 bits (349), Expect = 6.0e-30 Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 0
BLAST of CsaV3_4G037120 vs. TAIR10
Match: AT1G76200.1 (unknown protein) HSP 1 Score: 136.7 bits (343), Expect = 5.4e-33 Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0
BLAST of CsaV3_4G037120 vs. Swiss-Prot
Match: sp|Q8LDK3|NDUB2_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At1g76200 PE=3 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 9.7e-32 Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0
BLAST of CsaV3_4G037120 vs. TrEMBL
Match: tr|A0A0A0L0L4|A0A0A0L0L4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653460 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of CsaV3_4G037120 vs. TrEMBL
Match: tr|A0A1S3BV22|A0A1S3BV22_CUCME (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103493798 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33 Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0
BLAST of CsaV3_4G037120 vs. TrEMBL
Match: tr|B9R8J8|B9R8J8_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1600460 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 3.9e-30 Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 0
BLAST of CsaV3_4G037120 vs. TrEMBL
Match: tr|A0A1R3K7H4|A0A1R3K7H4_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02628 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 6.7e-30 Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0
BLAST of CsaV3_4G037120 vs. TrEMBL
Match: tr|A0A1R3ISD8|A0A1R3ISD8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21601 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 6.7e-30 Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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