CsaV3_3G005700 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAATTGTGATTTCAGAAAAGAGGTTGAAGGATCATTTCGTAATGTTGCATAGACTGCTACAAATGTAGATACCGGGAATTCAATACCCAACGGTTTCTATAAATTGAGAACCAAGTCCTCTCCACTGAGGGAACTCACCACCGCCACCAATTACCGGAATTCTACGACGGAGCACAAAATGGTCTCCCCTCCTATCACTCAATGCTTCCCATTCTAAATTTCTCCTACCTTCAACCTCTCGCTTCTTTCCTGGAGTCGGTTCAGTTCAGAGCCCTCCTTCTCGTTCTGACCACTCTTGAAACTCCCCGGAGCGCTTAACTTTCCAGATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTCAACATGTCGCGCATAGACAATCCGGAGGAGACAGAGGCGGCAGGCTCCAAGGAGATGAGATCTCTGCCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAGCAGACGACGGAATTGGAACGATCGGTGAAAAGAAAGAGTAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGGTACGTTAACGTTTTTGTCAGTTCATGAATCTTCCATATGATTTTCAAAACCGTAAGGATCCGTGAAATGAAAACGACATCTGAAATGAATCTTTCTGTTAAATTTTTTCCCCTCTTGTCTCTCTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCGTTTTCTCCGGCTCCGTTCTTGTTCTGATGCAATTTAGGCTTCCTCTTTCCGATCAATCAGGGGTGTTTAGTATATGTAGATATCAATATATGTTATATGTATATATAGATTTATCAATTAGGATGGTTGAAGTGTAATATTTGTATAATTATTAATCATGATCTGGAAACAGAAAGTTTAGATTATGGAGAAAGAAAACTTTGTTCATGAAATTTGTAGCTTGTTTGAGTGGTTTCTTTAATGGAAACACTCGTCAATTTAATTGTTCCCATTTTTCTATATCATGCTTTGATTATTTCTCTCATCTTCATTCCGTTTCTTTAATGGAAACCCTAAGCTTAATTTTTGTTCTTC ATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTCAACATGTCGCGCATAGACAATCCGGAGGAGACAGAGGCGGCAGGCTCCAAGGAGATGAGATCTCTGCCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAGCAGACGACGGAATTGGAACGATCGGTGAAAAGAAAGAGTAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCGTTTTCTCCGGCTCCGTTCTTGTTCTGA ATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTCAACATGTCGCGCATAGACAATCCGGAGGAGACAGAGGCGGCAGGCTCCAAGGAGATGAGATCTCTGCCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAGCAGACGACGGAATTGGAACGATCGGTGAAAAGAAAGAGTAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCGTTTTCTCCGGCTCCGTTCTTGTTCTGA MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPAFSPAPFLF
BLAST of CsaV3_3G005700 vs. NCBI nr
Match: XP_004149939.2 (PREDICTED: uncharacterized protein LOC101213465 [Cucumis sativus] >KGN56182.1 hypothetical protein Csa_3G094500 [Cucumis sativus]) HSP 1 Score: 263.1 bits (671), Expect = 5.6e-67 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of CsaV3_3G005700 vs. NCBI nr
Match: XP_008452335.1 (PREDICTED: uncharacterized protein LOC103493394 [Cucumis melo]) HSP 1 Score: 236.9 bits (603), Expect = 4.3e-59 Identity = 127/143 (88.81%), Postives = 131/143 (91.61%), Query Frame = 0
BLAST of CsaV3_3G005700 vs. NCBI nr
Match: XP_022932132.1 (uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 uncharacterized protein LOC111783825 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50 Identity = 112/143 (78.32%), Postives = 124/143 (86.71%), Query Frame = 0
BLAST of CsaV3_3G005700 vs. NCBI nr
Match: XP_022985273.1 (uncharacterized protein LOC111483313 [Cucurbita maxima]) HSP 1 Score: 203.0 bits (515), Expect = 6.9e-49 Identity = 110/143 (76.92%), Postives = 122/143 (85.31%), Query Frame = 0
BLAST of CsaV3_3G005700 vs. NCBI nr
Match: XP_022942037.1 (uncharacterized protein LOC111447225 [Cucurbita moschata]) HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44 Identity = 102/143 (71.33%), Postives = 120/143 (83.92%), Query Frame = 0
BLAST of CsaV3_3G005700 vs. TrEMBL
Match: tr|A0A0A0L6G1|A0A0A0L6G1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 3.7e-67 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of CsaV3_3G005700 vs. TrEMBL
Match: tr|A0A1S3BTM8|A0A1S3BTM8_CUCME (uncharacterized protein LOC103493394 OS=Cucumis melo OX=3656 GN=LOC103493394 PE=4 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 2.9e-59 Identity = 127/143 (88.81%), Postives = 131/143 (91.61%), Query Frame = 0
BLAST of CsaV3_3G005700 vs. TrEMBL
Match: tr|A0A2P5C424|A0A2P5C424_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_185680 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07 Identity = 61/145 (42.07%), Postives = 79/145 (54.48%), Query Frame = 0
BLAST of CsaV3_3G005700 vs. TrEMBL
Match: tr|W9QQS7|W9QQS7_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021141 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07 Identity = 62/155 (40.00%), Postives = 82/155 (52.90%), Query Frame = 0
BLAST of CsaV3_3G005700 vs. TrEMBL
Match: tr|A0A2P5CHI9|A0A2P5CHI9_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_284730 PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07 Identity = 61/146 (41.78%), Postives = 74/146 (50.68%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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