CsaV3_3G005700 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G005700
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionSpindle pole body component protein
Locationchr3 : 4888346 .. 4889561 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTGTGATTTCAGAAAAGAGGTTGAAGGATCATTTCGTAATGTTGCATAGACTGCTACAAATGTAGATACCGGGAATTCAATACCCAACGGTTTCTATAAATTGAGAACCAAGTCCTCTCCACTGAGGGAACTCACCACCGCCACCAATTACCGGAATTCTACGACGGAGCACAAAATGGTCTCCCCTCCTATCACTCAATGCTTCCCATTCTAAATTTCTCCTACCTTCAACCTCTCGCTTCTTTCCTGGAGTCGGTTCAGTTCAGAGCCCTCCTTCTCGTTCTGACCACTCTTGAAACTCCCCGGAGCGCTTAACTTTCCAGATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTCAACATGTCGCGCATAGACAATCCGGAGGAGACAGAGGCGGCAGGCTCCAAGGAGATGAGATCTCTGCCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAGCAGACGACGGAATTGGAACGATCGGTGAAAAGAAAGAGTAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGGTACGTTAACGTTTTTGTCAGTTCATGAATCTTCCATATGATTTTCAAAACCGTAAGGATCCGTGAAATGAAAACGACATCTGAAATGAATCTTTCTGTTAAATTTTTTCCCCTCTTGTCTCTCTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCGTTTTCTCCGGCTCCGTTCTTGTTCTGATGCAATTTAGGCTTCCTCTTTCCGATCAATCAGGGGTGTTTAGTATATGTAGATATCAATATATGTTATATGTATATATAGATTTATCAATTAGGATGGTTGAAGTGTAATATTTGTATAATTATTAATCATGATCTGGAAACAGAAAGTTTAGATTATGGAGAAAGAAAACTTTGTTCATGAAATTTGTAGCTTGTTTGAGTGGTTTCTTTAATGGAAACACTCGTCAATTTAATTGTTCCCATTTTTCTATATCATGCTTTGATTATTTCTCTCATCTTCATTCCGTTTCTTTAATGGAAACCCTAAGCTTAATTTTTGTTCTTC

mRNA sequence

ATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTCAACATGTCGCGCATAGACAATCCGGAGGAGACAGAGGCGGCAGGCTCCAAGGAGATGAGATCTCTGCCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAGCAGACGACGGAATTGGAACGATCGGTGAAAAGAAAGAGTAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCGTTTTCTCCGGCTCCGTTCTTGTTCTGA

Coding sequence (CDS)

ATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTCAACATGTCGCGCATAGACAATCCGGAGGAGACAGAGGCGGCAGGCTCCAAGGAGATGAGATCTCTGCCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAGCAGACGACGGAATTGGAACGATCGGTGAAAAGAAAGAGTAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCGTTTTCTCCGGCTCCGTTCTTGTTCTGA

Protein sequence

MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPAFSPAPFLF
BLAST of CsaV3_3G005700 vs. NCBI nr
Match: XP_004149939.2 (PREDICTED: uncharacterized protein LOC101213465 [Cucumis sativus] >KGN56182.1 hypothetical protein Csa_3G094500 [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 5.6e-67
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
           SLRQSPSAIPVVIPAFSPAPFLF
Sbjct: 121 SLRQSPSAIPVVIPAFSPAPFLF 143

BLAST of CsaV3_3G005700 vs. NCBI nr
Match: XP_008452335.1 (PREDICTED: uncharacterized protein LOC103493394 [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 4.3e-59
Identity = 127/143 (88.81%), Postives = 131/143 (91.61%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSRI+NPEETEAA SKEMR+L PITTRKH     SALLPSAAAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIENPEETEAAASKEMRTLAPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSD+Q  ELERSVKRKS SRDGESR VHGR NSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDDQAAELERSVKRKSGSRDGESR-VHGRKNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
           SLRQ+PSAIPVVIPAFSPAPFLF
Sbjct: 121 SLRQNPSAIPVVIPAFSPAPFLF 142

BLAST of CsaV3_3G005700 vs. NCBI nr
Match: XP_022932132.1 (uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 uncharacterized protein LOC111783825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50
Identity = 112/143 (78.32%), Postives = 124/143 (86.71%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSR++NPE T A G +EM+SL PITTRKH      ALLPS AAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPITTRKHRRRKRGALLPS-AAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLV+ EREKSD+QT E ERSVKRKS SRDGE+RGV+GR+NSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVLREREKSDDQTAESERSVKRKSGSRDGEARGVNGRSNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
             R+SP++IPVVIPAFSP PFLF
Sbjct: 121 --RRSPASIPVVIPAFSPTPFLF 140

BLAST of CsaV3_3G005700 vs. NCBI nr
Match: XP_022985273.1 (uncharacterized protein LOC111483313 [Cucurbita maxima])

HSP 1 Score: 203.0 bits (515), Expect = 6.9e-49
Identity = 110/143 (76.92%), Postives = 122/143 (85.31%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSR++NPE T A G +EM+SL PI TRKH      ALLPS AAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPIATRKHRRRKRGALLPS-AAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLV+ EREKSD+QT   ERSVKRKS SRDGE+RGV+GR+NSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVLREREKSDDQTAGSERSVKRKSGSRDGEARGVNGRSNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
             R+SP++IPVVIPAFSP PFLF
Sbjct: 121 --RRSPASIPVVIPAFSPTPFLF 140

BLAST of CsaV3_3G005700 vs. NCBI nr
Match: XP_022942037.1 (uncharacterized protein LOC111447225 [Cucurbita moschata])

HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44
Identity = 102/143 (71.33%), Postives = 120/143 (83.92%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFL EFVSCCVPV++SR++NPE TEA G++E+RSL PITTR H      AL  S AAK+
Sbjct: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPITTRIHRRRRRGALYTS-AAKM 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           A DW PSLGAISED VVLVVMER+KS+++T E ERSVKRKS S++G++RGVHGRNNSNDF
Sbjct: 61  AGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSQNGKARGVHGRNNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
             R+SP+AIPVVIPAFSP PFLF
Sbjct: 121 --RRSPAAIPVVIPAFSPTPFLF 140

BLAST of CsaV3_3G005700 vs. TrEMBL
Match: tr|A0A0A0L6G1|A0A0A0L6G1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.7e-67
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
           SLRQSPSAIPVVIPAFSPAPFLF
Sbjct: 121 SLRQSPSAIPVVIPAFSPAPFLF 143

BLAST of CsaV3_3G005700 vs. TrEMBL
Match: tr|A0A1S3BTM8|A0A1S3BTM8_CUCME (uncharacterized protein LOC103493394 OS=Cucumis melo OX=3656 GN=LOC103493394 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.9e-59
Identity = 127/143 (88.81%), Postives = 131/143 (91.61%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSRI+NPEETEAA SKEMR+L PITTRKH     SALLPSAAAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIENPEETEAAASKEMRTLAPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSD+Q  ELERSVKRKS SRDGESR VHGR NSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDDQAAELERSVKRKSGSRDGESR-VHGRKNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
           SLRQ+PSAIPVVIPAFSPAPFLF
Sbjct: 121 SLRQNPSAIPVVIPAFSPAPFLF 142

BLAST of CsaV3_3G005700 vs. TrEMBL
Match: tr|A0A2P5C424|A0A2P5C424_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_185680 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 61/145 (42.07%), Postives = 79/145 (54.48%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSA--LLPSAAA 60
           MKFL EFVSCC P             A   +E RSL        XXXXX    L  S + 
Sbjct: 1   MKFL-EFVSCCGPALTPSGPTVRPEPARRPEETRSLXXXXXXXXXXXXXXXGWLGASGSV 60

Query: 61  KLAADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSN 120
             +A+W+PSL +ISED VV V+ ++ + + +T   ER VKRKS SR    R  +G + S+
Sbjct: 61  SASAEWRPSLCSISEDNVV-VIEKKGEENNRTAGSERMVKRKSGSR--SPRRTNGVSYSD 120

Query: 121 DFSLRQSPSAIPVVIPAFSPAPFLF 144
           D+      S+ P VIPAFSP PF+F
Sbjct: 121 DY----GRSSFPTVIPAFSPTPFMF 137

BLAST of CsaV3_3G005700 vs. TrEMBL
Match: tr|W9QQS7|W9QQS7_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021141 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 62/155 (40.00%), Postives = 82/155 (52.90%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAG----SKEMRSLPPITTRKHXXXXXSALL-PS 60
           M+FL  FVSCC P  M  +  PE ++++     ++E RSL  + +R++        L  S
Sbjct: 1   MRFLV-FVSCCGPTVMPAV-RPESSQSSSATPPAEETRSL--VRSRRYRRRPKRGRLGAS 60

Query: 61  AAAKLAADWKPSLGAISEDKVVLVVMEREKSDEQ-------TTELERSVKRKSRSRDGES 120
            +A +  +WKPSL +ISED VV+V    E+SD Q       T   ER VKRKS S  G S
Sbjct: 61  GSAPVPVEWKPSLCSISEDNVVMV----ERSDGQDRQDQYRTAGPERLVKRKSGS--GSS 120

Query: 121 RGVHGRNNSNDFSLRQSPSAIPVVIPAFSPAPFLF 144
           R     N    F      S+ P VIPAFSP PF+F
Sbjct: 121 R----MNVVASFGDDYGRSSFPTVIPAFSPTPFMF 141

BLAST of CsaV3_3G005700 vs. TrEMBL
Match: tr|A0A2P5CHI9|A0A2P5CHI9_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_284730 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 61/146 (41.78%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSL---PPITTRKHXXXXXSALLPSAA 60
           MKFL EFVSCC P             A   +E RSL           XXXXX        
Sbjct: 1   MKFL-EFVSCCGPALTPSGPTVRPEPARRPEETRSLVQXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  AKLAADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNS 120
              +A+W+PSL +ISED VV V+ +R + D +T   ER VKRKS SR    R   G + S
Sbjct: 61  VSASAEWRPSLCSISEDNVV-VIEKRGEEDNRTAGSERMVKRKSGSR--SPRRTSGGSYS 120

Query: 121 NDFSLRQSPSAIPVVIPAFSPAPFLF 144
            D+      S+ P VIPAFSP PF+F
Sbjct: 121 EDY----GRSSFPTVIPAFSPTPFMF 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004149939.25.6e-67100.00PREDICTED: uncharacterized protein LOC101213465 [Cucumis sativus] >KGN56182.1 hy... [more]
XP_008452335.14.3e-5988.81PREDICTED: uncharacterized protein LOC103493394 [Cucumis melo][more]
XP_022932132.12.8e-5078.32uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 unchar... [more]
XP_022985273.16.9e-4976.92uncharacterized protein LOC111483313 [Cucurbita maxima][more]
XP_022942037.12.3e-4471.33uncharacterized protein LOC111447225 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L6G1|A0A0A0L6G1_CUCSA3.7e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1[more]
tr|A0A1S3BTM8|A0A1S3BTM8_CUCME2.9e-5988.81uncharacterized protein LOC103493394 OS=Cucumis melo OX=3656 GN=LOC103493394 PE=... [more]
tr|A0A2P5C424|A0A2P5C424_PARAD1.1e-0742.07Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_185680 PE... [more]
tr|W9QQS7|W9QQS7_9ROSA1.5e-0740.00Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021141 PE=4 SV=1[more]
tr|A0A2P5CHI9|A0A2P5CHI9_9ROSA4.3e-0741.78Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_284730 PE=4 S... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G005700.1CsaV3_3G005700.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..112
NoneNo IPR availablePANTHERPTHR35318FAMILY NOT NAMEDcoord: 1..143

The following gene(s) are paralogous to this gene:

None