Cla003836 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003836
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 7438683 .. 7439081 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTGAACATGTCACGCATAGAGAATCCGGAGGCGACGGAGGCACCAGGCCCCAAGGAGATGAGATCTATGACTCCGATTACCACCAGGAAACACCGGCGGAGAAAACGAAGCGCGTTGTTGCCTTCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCGGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAACAGACGGCGGAATCGGAACGATCGGTGAAAAGAAAGAGCGGATCTCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGGTACGTTATCGTTTGTCAGTTTCATGAATCTTCCGTATGA

mRNA sequence

ATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTGAACATGTCACGCATAGAGAATCCGGAGGCGACGGAGGCACCAGGCCCCAAGGAGATGAGATCTATGACTCCGATTACCACCAGGAAACACCGGCGGAGAAAACGAAGCGCGTTGTTGCCTTCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCGGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAACAGACGGCGGAATCGGAACGATCGGTGAAAAGAAAGAGCGGATCTCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGGTACGTTATCGTTTGTCAGTTTCATGAATCTTCCGTATGA

Coding sequence (CDS)

ATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTGAACATGTCACGCATAGAGAATCCGGAGGCGACGGAGGCACCAGGCCCCAAGGAGATGAGATCTATGACTCCGATTACCACCAGGAAACACCGGCGGAGAAAACGAAGCGCGTTGTTGCCTTCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCGGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAACAGACGGCGGAATCGGAACGATCGGTGAAAAGAAAGAGCGGATCTCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGGTACGTTATCGTTTGTCAGTTTCATGAATCTTCCGTATGA

Protein sequence

MKFLFEFVSCCVPVNMSRIENPEATEAPGPKEMRSMTPITTRKHRRRKRSALLPSAAKLAADWKPSLGAISEDKVVLVVMEREKSDEQTAESERSVKRKSGSRDGESRGVHGRNNSNDFRYVIVCQFHESSV

Homology

[Close]

BLAST of Cla003836 vs. TrEMBL
Match: A0A0A0L6G1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G094500 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.6e-53
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 1


Query: 1   MKFLFEFVSCCVPVNMSRIENPEATEAPGPKEMRSMTPITTRKHRRRKRSALLPSAA-KL 60
           MKFLFEFVSCCVPVNMSRI+NPE TEA G KEMRS+ PITTRKHRRRKRSALLPSAA KL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTAESERSVKRKSGSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSDEQT E ERSVKRKS SRDGESRGVHGRNNSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120

[Close]

BLAST of Cla003836 vs. TrEMBL
Match: M5WVR1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013389mg PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-10
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1


Query: 1   MKFLFEFVSCCVPVNMSRIENPEAT--EAPGPKEMRSMTPITTRKHRRRKRSALLPSAAK 60
           MKFL EFVSCC       I  P  T  +AP  +E  S+ P   R+ R+R R     S + 
Sbjct: 1   MKFLLEFVSCC------GIARPATTGEQAPLSEETSSLVPRRMRRRRKRGRPGNSGSTSP 60

Query: 61  LAADWKPSLGAISEDKVVLVVMEREKSDEQTAESERSVKRKSG 102
            + +W+PSL +ISED VV +V++R      TAE ER++KRKSG
Sbjct: 61  NSVEWRPSLTSISEDNVVAMVVDR------TAEVERAMKRKSG 91

[Close]

BLAST of Cla003836 vs. TrEMBL
Match: W9QQS7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021141 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-08
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 1   MKFLFEFVSCCVPVNMSRIENPEATEA----PGPKEMRSMTPITTRKHRRRKRSALLPSA 60
           M+FL  FVSCC P  M  +  PE++++    P  +E RS+  + +R++RRR +   L ++
Sbjct: 1   MRFLV-FVSCCGPTVMPAVR-PESSQSSSATPPAEETRSL--VRSRRYRRRPKRGRLGAS 60

Query: 61  --AKLAADWKPSLGAISEDKVVLVVMEREKSDEQ-------TAESERSVKRKSGSRDGES 109
             A +  +WKPSL +ISED VV+V    E+SD Q       TA  ER VKRKSGS  G S
Sbjct: 61  GSAPVPVEWKPSLCSISEDNVVMV----ERSDGQDRQDQYRTAGPERLVKRKSGS--GSS 111

[Close]

BLAST of Cla003836 vs. TrEMBL
Match: F6H2H6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g04780 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-08
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1


Query: 1   MKFLFEFVSCC-VPVNMSRIENPEATEAPGPKEMRSMTPITTRKHRRRKRSALLPSAAKL 60
           MKF+FEFVSCC +P    R   PE  E P P+E R+   +  R+  R++R     S++  
Sbjct: 1   MKFIFEFVSCCGMP---PRPAVPE--EVPLPEESRT---VELRRRYRKERVGSSRSSSS- 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTAESERSVKRKSGSRDGESRGVHGRNNSNDF 120
           + +W PSL +ISED +VL      + +E+ AESER+ KRK+ S    S  +H R+ + D+
Sbjct: 61  SVEWHPSLCSISEDNLVL------EKEERPAESERTPKRKAAS----STKIHVRSYNEDY 102

[Close]

BLAST of Cla003836 vs. TrEMBL
Match: A0A067KSA1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00769 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-06
Identity = 40/121 (33.06%), Postives = 58/121 (47.93%), Query Frame = 1


Query: 8   VSCCVPV-------NMSRIENPEATEAPGPKEMRSMTPITTRKHRRRKRSALLPSAAKLA 67
           +SCC P        +M  +    + E        ++  +TT + RRRKR    PS+A + 
Sbjct: 1   MSCCGPTGGEVNQKDMPELYGRRSEETRALVSSLTLRSLTTSRSRRRKRGTTSPSSATVV 60

Query: 68  ADWKPSLGAISEDKVVLVVMEREKSDEQTAESERSVKRKSGSRDGESRGVHGRNNSNDFR 122
           A WKP+L +ISED VV+VV E          +ER VKRKS    G        + + D+R
Sbjct: 61  AVWKPTLCSISEDNVVMVVEE---------GTERVVKRKSSGGGGSRNIASVASFNEDYR 112

[Close]

BLAST of Cla003836 vs. NCBI nr
Match: gi|778676197|ref|XP_004149939.2| (PREDICTED: uncharacterized protein LOC101213465 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-52
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 1


Query: 1   MKFLFEFVSCCVPVNMSRIENPEATEAPGPKEMRSMTPITTRKHRRRKRSALLPSAA-KL 60
           MKFLFEFVSCCVPVNMSRI+NPE TEA G KEMRS+ PITTRKHRRRKRSALLPSAA KL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTAESERSVKRKSGSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSDEQT E ERSVKRKS SRDGESRGVHGRNNSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120

[Close]

BLAST of Cla003836 vs. NCBI nr
Match: gi|659102830|ref|XP_008452335.1| (PREDICTED: uncharacterized protein LOC103493394 [Cucumis melo])

HSP 1 Score: 204.9 bits (520), Expect = 8.6e-50
Identity = 107/120 (89.17%), Postives = 110/120 (91.67%), Query Frame = 1


Query: 1   MKFLFEFVSCCVPVNMSRIENPEATEAPGPKEMRSMTPITTRKHRRRKRSALLPSAA-KL 60
           MKFLFEFVSCCVPVNMSRIENPE TEA   KEMR++ PITTRKHRRRKRSALLPSAA KL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIENPEETEAAASKEMRTLAPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTAESERSVKRKSGSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSD+Q AE ERSVKRKSGSRDGESR VHGR NSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDDQAAELERSVKRKSGSRDGESR-VHGRKNSNDF 119

[Close]

BLAST of Cla003836 vs. NCBI nr
Match: gi|595877258|ref|XP_007212234.1| (hypothetical protein PRUPE_ppa013389mg [Prunus persica])

HSP 1 Score: 72.0 bits (175), Expect = 8.7e-10
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1


Query: 1   MKFLFEFVSCCVPVNMSRIENPEAT--EAPGPKEMRSMTPITTRKHRRRKRSALLPSAAK 60
           MKFL EFVSCC       I  P  T  +AP  +E  S+ P   R+ R+R R     S + 
Sbjct: 1   MKFLLEFVSCC------GIARPATTGEQAPLSEETSSLVPRRMRRRRKRGRPGNSGSTSP 60

Query: 61  LAADWKPSLGAISEDKVVLVVMEREKSDEQTAESERSVKRKSG 102
            + +W+PSL +ISED VV +V++R      TAE ER++KRKSG
Sbjct: 61  NSVEWRPSLTSISEDNVVAMVVDR------TAEVERAMKRKSG 91

[Close]

BLAST of Cla003836 vs. NCBI nr
Match: gi|802586957|ref|XP_012070707.1| (PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas])

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-09
Identity = 45/128 (35.16%), Postives = 63/128 (49.22%), Query Frame = 1


Query: 1   MKFLFEFVSCCVPV-------NMSRIENPEATEAPGPKEMRSMTPITTRKHRRRKRSALL 60
           MKF  EF+SCC P        +M  +    + E        ++  +TT + RRRKR    
Sbjct: 1   MKFFLEFMSCCGPTGGEVNQKDMPELYGRRSEETRALVSSLTLRSLTTSRSRRRKRGTTS 60

Query: 61  PSAAKLAADWKPSLGAISEDKVVLVVMEREKSDEQTAESERSVKRKSGSRDGESRGVHGR 120
           PS+A + A WKP+L +ISED VV+VV E          +ER VKRKS    G        
Sbjct: 61  PSSATVVAVWKPTLCSISEDNVVMVVEE---------GTERVVKRKSSGGGGSRNIASVA 119

Query: 121 NNSNDFRY 122
           + + D+R+
Sbjct: 121 SFNEDYRH 119

[Close]

BLAST of Cla003836 vs. NCBI nr
Match: gi|1009110802|ref|XP_015897698.1| (PREDICTED: uncharacterized protein LOC107431323 [Ziziphus jujuba])

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 1


Query: 1   MKFLFEFVSCC-VPV-NMSRIENPEATEAPGPKEMRSMTPITTRKHRRRKRSALLPS--- 60
           MKF FEFV+C  +P+ + S +    A+ A    +   ++  + RK  RRKR  L  S   
Sbjct: 32  MKFFFEFVACWGLPITDRSSVPAAPASRADDAAKPLVVSSSSLRKRHRRKRGRLGHSGSA 91

Query: 61  ---AAKLAADWKPSLGAISEDKVVLVVMEREKSDEQTAESERSVKRKSGSRDGESRGVHG 120
              AA +A +WKPSLG+I EDKVV +   + K D     +ER VKRKS +++     VH 
Sbjct: 92  SVAAAAVAVEWKPSLGSICEDKVVAM---KGKEDRTAGGAERIVKRKSETKNAR---VHV 151

Query: 121 RNNSNDFRYVIV 125
           R  + D+  V V
Sbjct: 152 RTFNEDYGRVSV 157

The following BLAST results are available for this feature:

BLAST of Cla003836 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6G1_CUCSA	7.6e-53	91.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G094500 PE=4 SV=1	[more]
M5WVR1_PRUPE	6.1e-10	43.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013389mg PE=4 SV=1	[more]
W9QQS7_9ROSA	4.3e-08	42.98	Uncharacterized protein OS=Morus notabilis GN=L484_021141 PE=4 SV=1	[more]
F6H2H6_VITVI	9.7e-08	39.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g04780 PE=4 SV=...	[more]
A0A067KSA1_JATCU	3.1e-06	33.06	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00769 PE=4 SV=1	[more]

BLAST of Cla003836 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676197\|ref\|XP_004149939.2\|	1.1e-52	91.67	PREDICTED: uncharacterized protein LOC101213465 [Cucumis sativus]	[more]
gi\|659102830\|ref\|XP_008452335.1\|	8.6e-50	89.17	PREDICTED: uncharacterized protein LOC103493394 [Cucumis melo]	[more]
gi\|595877258\|ref\|XP_007212234.1\|	8.7e-10	43.69	hypothetical protein PRUPE_ppa013389mg [Prunus persica]	[more]
gi\|802586957\|ref\|XP_012070707.1\|	3.3e-09	35.16	PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]	[more]
gi\|1009110802\|ref\|XP_015897698.1\|	2.8e-08	37.88	PREDICTED: uncharacterized protein LOC107431323 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016829	lyase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU45027	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003836	Cla003836.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU45027	WMU45027	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35318	FAMILY NOT NAMED	coord: 2..120 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003836	Cla97C10G190200	Watermelon (97103) v2	wmwmbB052
Cla003836	Csa3G094500	Cucumber (Chinese Long) v2	cuwmB194
Cla003836	MELO3C016602	Melon (DHL92) v3.5.1	mewmB455
Cla003836	ClCG10G006150	Watermelon (Charleston Gray)	wcgwmB052
Cla003836	CSPI03G05600	Wild cucumber (PI 183967)	cpiwmB193
Cla003836	Cucsa.074230	Cucumber (Gy14) v1	cgywmB075
Cla003836	CmaCh16G008330	Cucurbita maxima (Rimu)	cmawmB298
Cla003836	CmoCh16G009290	Cucurbita moschata (Rifu)	cmowmB289
Cla003836	Lsi05G006510	Bottle gourd (USVL1VR-Ls)	lsiwmB348
Cla003836	Cp4.1LG00g00290	Cucurbita pepo (Zucchini)	cpewmB002
Cla003836	CsGy3G005730	Cucumber (Gy14) v2	cgybwmB183
Cla003836	MELO3C016602.2	Melon (DHL92) v3.6.1	medwmB437
Cla003836	Carg24838	Silver-seed gourd	carwmB0791
Cla003836	CsaV3_3G005700	Cucumber (Chinese Long) v3	cucwmB204
Cla003836	Bhi11G000552	Wax gourd	wgowmB009

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003836	Silver-seed gourd	carwmB0659
Cla003836	Cucurbita maxima (Rimu)	cmawmB659
Cla003836	Cucurbita moschata (Rifu)	cmowmB653
Cla003836	Cucurbita pepo (Zucchini)	cpewmB386