CsGy3G005730 (gene) Cucumber (Gy14) v2

NameCsGy3G005730
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionSpindle pole body component protein
LocationChr3 : 4750772 .. 4751988 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAATTGTGATTTCAGAAAAGGGGTTGAAGGATCATTTCGTAATGTTGCATAGACTGCTACAAATGTAGATACCGGGAATTCAATACCCAACCGTTTCTATAAATTGAGAACCAAGCCCTCTCCACTGAGGGAACTCACCACCGCCACCAATTACCGGAATTCTACGACGGAGCACAAAATGGACTCCCCTCCTATCACTCAATGCTTCCCATTCTAAATTTCTCCTACCTTCAACCTCTCGCTTCTTTCCTGGAGTCGGTTCAGTTCAGAGCCCTCCTTCTCGTTCTGACCACTCTTGAAACTCCCCGGAGCGCTTAACTTTCCAGATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTCAACATGTCGCGCATAGACAATCCGGAGGAGACAGAGGCGGCAGGCTCCAAGGAGATGAGATCTCTGCCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAGCAGACGACGGAATTGGAACGATCGGTGAAAAGAAAGAGTAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGGTACGTTAACGTTTTTGTCAGTTCATGAATCTTCCATATGATTTTCAAAACCGTAAGGATCCGTGAAATGAAAACCACATCTGAAATGAATCTTTCTGTTAAATTTTCCCCCCTCTCTGTCTCTCTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCGTTTTCTCCGGCTCCGTTCTTGTTCTGATGCAATTTAGGCTTCCTCTTTCCGATCAATCAGGGGTGTTTAGTATATGTAGATATCAATATATGTTATATGTATATATAGATTTATCAATTAGGATGGTTGAAGTGTAATATTTGTATAATTATTAATCATGATCTGGAAACAGAAAGTTTAGATTATCGAGAAAGAAAACTTTGTTCATGAAATTGGTAGCTTGTTTGAGTGGTTTCTTTGATGGAAACACTCGTCAATTTAATTGTTCCCATTTTTCTATATCATGCTTTGATTATTTCTCTCATCTTCATTCCGTTTCTTTAATGGAAACCCTAAGCTTAATTTTTGTTCTTCAA

mRNA sequence

GGAATTGTGATTTCAGAAAAGGGGTTGAAGGATCATTTCGTAATGTTGCATAGACTGCTACAAATGTAGATACCGGGAATTCAATACCCAACCGTTTCTATAAATTGAGAACCAAGCCCTCTCCACTGAGGGAACTCACCACCGCCACCAATTACCGGAATTCTACGACGGAGCACAAAATGGACTCCCCTCCTATCACTCAATGCTTCCCATTCTAAATTTCTCCTACCTTCAACCTCTCGCTTCTTTCCTGGAGTCGGTTCAGTTCAGAGCCCTCCTTCTCGTTCTGACCACTCTTGAAACTCCCCGGAGCGCTTAACTTTCCAGATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTCAACATGTCGCGCATAGACAATCCGGAGGAGACAGAGGCGGCAGGCTCCAAGGAGATGAGATCTCTGCCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAGCAGACGACGGAATTGGAACGATCGGTGAAAAGAAAGAGTAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCGTTTTCTCCGGCTCCGTTCTTGTTCTGATGCAATTTAGGCTTCCTCTTTCCGATCAATCAGGGGTGTTTAGTATATGTAGATATCAATATATGTTATATGTATATATAGATTTATCAATTAGGATGGTTGAAGTGTAATATTTGTATAATTATTAATCATGATCTGGAAACAGAAAGTTTAGATTATCGAGAAAGAAAACTTTGTTCATGAAATTGGTAGCTTGTTTGAGTGGTTTCTTTGATGGAAACACTCGTCAATTTAATTGTTCCCATTTTTCTATATCATGCTTTGATTATTTCTCTCATCTTCATTCCGTTTCTTTAATGGAAACCCTAAGCTTAATTTTTGTTCTTCAA

Coding sequence (CDS)

ATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTCAACATGTCGCGCATAGACAATCCGGAGGAGACAGAGGCGGCAGGCTCCAAGGAGATGAGATCTCTGCCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGAGCAGACGACGGAATTGGAACGATCGGTGAAAAGAAAGAGTAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCGTTTTCTCCGGCTCCGTTCTTGTTCTGA

Protein sequence

MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPAFSPAPFLF
BLAST of CsGy3G005730 vs. NCBI nr
Match: XP_004149939.2 (PREDICTED: uncharacterized protein LOC101213465 [Cucumis sativus] >KGN56182.1 hypothetical protein Csa_3G094500 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 1.2e-66
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
           SLRQSPSAIPVVIPAFSPAPFLF
Sbjct: 121 SLRQSPSAIPVVIPAFSPAPFLF 143

BLAST of CsGy3G005730 vs. NCBI nr
Match: XP_008452335.1 (PREDICTED: uncharacterized protein LOC103493394 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 7.3e-59
Identity = 127/143 (88.81%), Postives = 131/143 (91.61%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSRI+NPEETEAA SKEMR+L PITTRKH     SALLPSAAAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIENPEETEAAASKEMRTLAPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSD+Q  ELERSVKRKS SRDGESR VHGR NSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDDQAAELERSVKRKSGSRDGESR-VHGRKNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
           SLRQ+PSAIPVVIPAFSPAPFLF
Sbjct: 121 SLRQNPSAIPVVIPAFSPAPFLF 142

BLAST of CsGy3G005730 vs. NCBI nr
Match: XP_022932132.1 (uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 uncharacterized protein LOC111783825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 4.8e-50
Identity = 112/143 (78.32%), Postives = 124/143 (86.71%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSR++NPE T A G +EM+SL PITTRKH      ALLPS AAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPITTRKHRRRKRGALLPS-AAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLV+ EREKSD+QT E ERSVKRKS SRDGE+RGV+GR+NSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVLREREKSDDQTAESERSVKRKSGSRDGEARGVNGRSNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
             R+SP++IPVVIPAFSP PFLF
Sbjct: 121 --RRSPASIPVVIPAFSPTPFLF 140

BLAST of CsGy3G005730 vs. NCBI nr
Match: XP_022985273.1 (uncharacterized protein LOC111483313 [Cucurbita maxima])

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 110/143 (76.92%), Postives = 122/143 (85.31%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSR++NPE T A G +EM+SL PI TRKH      ALLPS AAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPIATRKHRRRKRGALLPS-AAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLV+ EREKSD+QT   ERSVKRKS SRDGE+RGV+GR+NSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVLREREKSDDQTAGSERSVKRKSGSRDGEARGVNGRSNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
             R+SP++IPVVIPAFSP PFLF
Sbjct: 121 --RRSPASIPVVIPAFSPTPFLF 140

BLAST of CsGy3G005730 vs. NCBI nr
Match: XP_022942037.1 (uncharacterized protein LOC111447225 [Cucurbita moschata])

HSP 1 Score: 187.2 bits (474), Expect = 3.9e-44
Identity = 102/143 (71.33%), Postives = 120/143 (83.92%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFL EFVSCCVPV++SR++NPE TEA G++E+RSL PITTR H      AL  S AAK+
Sbjct: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPITTRIHRRRRRGALYTS-AAKM 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           A DW PSLGAISED VVLVVMER+KS+++T E ERSVKRKS S++G++RGVHGRNNSNDF
Sbjct: 61  AGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSQNGKARGVHGRNNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
             R+SP+AIPVVIPAFSP PFLF
Sbjct: 121 --RRSPAAIPVVIPAFSPTPFLF 140

BLAST of CsGy3G005730 vs. TrEMBL
Match: tr|A0A0A0L6G1|A0A0A0L6G1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 8.3e-67
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
           SLRQSPSAIPVVIPAFSPAPFLF
Sbjct: 121 SLRQSPSAIPVVIPAFSPAPFLF 143

BLAST of CsGy3G005730 vs. TrEMBL
Match: tr|A0A1S3BTM8|A0A1S3BTM8_CUCME (uncharacterized protein LOC103493394 OS=Cucumis melo OX=3656 GN=LOC103493394 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.8e-59
Identity = 127/143 (88.81%), Postives = 131/143 (91.61%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSALLPSAAAKL 60
           MKFLFEFVSCCVPVNMSRI+NPEETEAA SKEMR+L PITTRKH     SALLPSAAAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIENPEETEAAASKEMRTLAPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSD+Q  ELERSVKRKS SRDGESR VHGR NSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDDQAAELERSVKRKSGSRDGESR-VHGRKNSNDF 120

Query: 121 SLRQSPSAIPVVIPAFSPAPFLF 144
           SLRQ+PSAIPVVIPAFSPAPFLF
Sbjct: 121 SLRQNPSAIPVVIPAFSPAPFLF 142

BLAST of CsGy3G005730 vs. TrEMBL
Match: tr|A0A2P5C424|A0A2P5C424_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_185680 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-07
Identity = 61/145 (42.07%), Postives = 79/145 (54.48%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHXXXXXSA--LLPSAAA 60
           MKFL EFVSCC P             A   +E RSL        XXXXX    L  S + 
Sbjct: 1   MKFL-EFVSCCGPALTPSGPTVRPEPARRPEETRSLXXXXXXXXXXXXXXXGWLGASGSV 60

Query: 61  KLAADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSN 120
             +A+W+PSL +ISED VV V+ ++ + + +T   ER VKRKS SR    R  +G + S+
Sbjct: 61  SASAEWRPSLCSISEDNVV-VIEKKGEENNRTAGSERMVKRKSGSR--SPRRTNGVSYSD 120

Query: 121 DFSLRQSPSAIPVVIPAFSPAPFLF 144
           D+      S+ P VIPAFSP PF+F
Sbjct: 121 DY----GRSSFPTVIPAFSPTPFMF 137

BLAST of CsGy3G005730 vs. TrEMBL
Match: tr|W9QQS7|W9QQS7_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021141 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 62/155 (40.00%), Postives = 82/155 (52.90%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAG----SKEMRSLPPITTRKHXXXXXSALL-PS 60
           M+FL  FVSCC P  M  +  PE ++++     ++E RSL  + +R++        L  S
Sbjct: 1   MRFLV-FVSCCGPTVMPAV-RPESSQSSSATPPAEETRSL--VRSRRYRRRPKRGRLGAS 60

Query: 61  AAAKLAADWKPSLGAISEDKVVLVVMEREKSDEQ-------TTELERSVKRKSRSRDGES 120
            +A +  +WKPSL +ISED VV+V    E+SD Q       T   ER VKRKS S  G S
Sbjct: 61  GSAPVPVEWKPSLCSISEDNVVMV----ERSDGQDRQDQYRTAGPERLVKRKSGS--GSS 120

Query: 121 RGVHGRNNSNDFSLRQSPSAIPVVIPAFSPAPFLF 144
           R     N    F      S+ P VIPAFSP PF+F
Sbjct: 121 R----MNVVASFGDDYGRSSFPTVIPAFSPTPFMF 141

BLAST of CsGy3G005730 vs. TrEMBL
Match: tr|A0A2P5CHI9|A0A2P5CHI9_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_284730 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.3e-07
Identity = 61/146 (41.78%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSL---PPITTRKHXXXXXSALLPSAA 60
           MKFL EFVSCC P             A   +E RSL           XXXXX        
Sbjct: 1   MKFL-EFVSCCGPALTPSGPTVRPEPARRPEETRSLVQXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  AKLAADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNS 120
              +A+W+PSL +ISED VV V+ +R + D +T   ER VKRKS SR    R   G + S
Sbjct: 61  VSASAEWRPSLCSISEDNVV-VIEKRGEEDNRTAGSERMVKRKSGSR--SPRRTSGGSYS 120

Query: 121 NDFSLRQSPSAIPVVIPAFSPAPFLF 144
            D+      S+ P VIPAFSP PF+F
Sbjct: 121 EDY----GRSSFPTVIPAFSPTPFMF 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004149939.21.2e-66100.00PREDICTED: uncharacterized protein LOC101213465 [Cucumis sativus] >KGN56182.1 hy... [more]
XP_008452335.17.3e-5988.81PREDICTED: uncharacterized protein LOC103493394 [Cucumis melo][more]
XP_022932132.14.8e-5078.32uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 unchar... [more]
XP_022985273.11.2e-4876.92uncharacterized protein LOC111483313 [Cucurbita maxima][more]
XP_022942037.13.9e-4471.33uncharacterized protein LOC111447225 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L6G1|A0A0A0L6G1_CUCSA8.3e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1[more]
tr|A0A1S3BTM8|A0A1S3BTM8_CUCME4.8e-5988.81uncharacterized protein LOC103493394 OS=Cucumis melo OX=3656 GN=LOC103493394 PE=... [more]
tr|A0A2P5C424|A0A2P5C424_PARAD1.9e-0742.07Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_185680 PE... [more]
tr|W9QQS7|W9QQS7_9ROSA2.5e-0740.00Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021141 PE=4 SV=1[more]
tr|A0A2P5CHI9|A0A2P5CHI9_9ROSA7.3e-0741.78Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_284730 PE=4 S... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G005730.1CsGy3G005730.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..124
NoneNo IPR availablePANTHERPTHR35318FAMILY NOT NAMEDcoord: 1..143