MELO3C017010.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C017010.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
Locationchr07 : 447369 .. 449065 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCTTCCATCTTCTTCATTCGATCCTTTCTGCAGTCGGATTTTGGTGATCAATTGAAAGTGTAGAGGGCAATTATGGGAGGCGGTGGACATGGAGCTGGAACTACTTACAAGGGCGTGACCATACACCCACCAAAGCGATGGCACACCGTCACCGGCAAGGGGCTGTGCGCCATTATGTGGTATAAACCCTAGCTTCATTAGTTTCCGATCGAGCAATTCTATTGAAGGAACCTAATTTTGATTTTCCTGTTTCAGCCAAATTGCCTCATAGTTAATTTCTTTACTTTCTTTTTCTGTTTTACAAATCCTGCGTCTATTCCGATCTGTCCTCGTCGCATTATTCCAAATAAATGCATCGCGCTCGAGTGGAGTTACAAGTTTTAATAATATCTTGATGCCAGATGCTATATCCGAGTTCATCGTCTCGTATGCAATTTGATGTTGAGAATCAGTAGGATTGCTATTGAGAAATTGGCATCTGGGTATTGACCAAATTTTTTATGACTATCTTTCAGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGTAAAAATCACTGTTTCCTTAATCGTAAATTATATTTCTACTTATTATTGGTTAAAATCTCTAAATTTTCTGGCTGAAGTTCTTGAGGATATATATGTTATAGGGCAATCTTTGGAGCGATTTAAAATCATTTGTTGTTTTTAAATTTAGTAGAAAAATGTTGCAATCATTCAAAATCCATTATATTTCTAATAGTATGGAAAATTCAATTAGAAGTGTAAAATTAAACATTAAATTGATTTTAAGTGATTAAAGCCTAACCTTGTGTTTGGAAGTTATTTTAAATATGACAAAAAGTGACGTTAACCATTTTCAAAACATTTTGTTGCCATTTTTAGCTTACACAGTATGTATTTTCTATTCCAGAAAATCTAACTTTTGTAATATTTGTTACGATCAGGGCTGGAGACATCCATGGGAAGGCCATGGTCATGGTGACCATGGTGACCATGGGCATGGGCACTAGGTATTGTTTTTATTATTTACCTCTCTTTCCAAATTTCCCCAATTAATTATCTGTTTTTATAGAGAAAAAAAAGTCAAAACAAAGTGTGTCCTAGCATTCTGATATAATTACAACACTGAACTATTAGCTATTTGACATCAGGTAATATGAGCGCTATCAGCTATGGGCACTTTTTTTTTTTTTTTTGGTTGGAGTGCATTTCTATTGATAAGCTTTCCAGTTTACTTGTAGTGGCTCGATGCTAATGGTGGGCGAAGGGGAAATGGCAAGGCCTCAGTTGCAGGTTATCTATTTGAACGTTAAGAGTACCATATTTGCTAAGTTCTTTTCAAATAAGGATATTGTGATAGCCAAATGGATATAAACATCACTTCATCATTTTTATTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTAATTTGTGTTCAATCACAGCTGTGGTTGAGTTGAAGCAAAGATCAATGCGCTATTTCTGAATATAGGTTGTTCTTTTATTTCATTATGTCTTTTGCATGGCGCATACCTTTCTTTTAAATTAAGGTTATTCCATTTGAATAATTTGATCTGCTTAAACTGAAATTCACGTACCCTTCAATCTAGTGTCACAACAATGGGATTTTATTTGCCATGAGACAGTTACAGGCATTGTATTTGCATAAT

mRNA sequence

AAGCTTCCATCTTCTTCATTCGATCCTTTCTGCAGTCGGATTTTGGTGATCAATTGAAAGTGTAGAGGGCAATTATGGGAGGCGGTGGACATGGAGCTGGAACTACTTACAAGGGCGTGACCATACACCCACCAAAGCGATGGCACACCGTCACCGGCAAGGGGCTGTGCGCCATTATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGCCATGGTCATGGTGACCATGGTGACCATGGGCATGGGCACTAGAGAAAAAAAAGTCAAAACAAAGTGTGTCCTAGCATTCTGATATAATTACAACACTGAACTATTAGCTATTTGACATCAGTTTACTTGTAGTGGCTCGATGCTAATGGTGGGCGAAGGGGAAATGGCAAGGCCTCAGTTGCAGGTTATCTATTTGAACGTTAAGAGTACCATATTTGCTAAGTTCTTTTCAAATAAGGATATTGTGATAGCCAAATGGATATAAACATCACTTCATCATTTTTATTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTAATTTGTGTTCAATCACAGCTGTGGTTGAGTTGAAGCAAAGATCAATGCGCTATTTCTGAATATAGGTTGTTCTTTTATTTCATTATGTCTTTTGCATGGCGCATACCTTTCTTTTAAATTAAGGTTATTCCATTTGAATAATTTGATCTGCTTAAACTGAAATTCACGTACCCTTCAATCTAGTGTCACAACAATGGGATTTTATTTGCCATGAGACAGTTACAGGCATTGTATTTGCATAAT

Coding sequence (CDS)

ATGGGAGGCGGTGGACATGGAGCTGGAACTACTTACAAGGGCGTGACCATACACCCACCAAAGCGATGGCACACCGTCACCGGCAAGGGGCTGTGCGCCATTATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGCCATGGTCATGGTGACCATGGTGACCATGGGCATGGGCACTAG

Protein sequence

MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGHGHGDHGDHGHGH
BLAST of MELO3C017010.2 vs. NCBI nr
Match: XP_008452937.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo] >XP_008452938.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 3.7e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDXXXXXHGH 73
          GHGDXXXXXHGH
Sbjct: 61 GHGDXXXXXHGH 72

BLAST of MELO3C017010.2 vs. NCBI nr
Match: XP_004145533.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus] >XP_011654263.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus] >KGN55485.1 hypothetical protein Csa_4G653460 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-33
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTT+KGVTIHPPKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGD 65
          GHGD
Sbjct: 61 GHGD 64

BLAST of MELO3C017010.2 vs. NCBI nr
Match: XP_022936519.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata] >XP_022936520.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata] >XP_022975909.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita maxima] >XP_022975910.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita maxima] >XP_023534987.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita pepo subsp. pepo] >XP_023534988.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.9 bits (346), Expect = 1.4e-29
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTT+KG+TIH PKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDXXXXXHGH 73
          G        HGH
Sbjct: 61 G-------DHGH 65

BLAST of MELO3C017010.2 vs. NCBI nr
Match: OMO85481.1 (hypothetical protein COLO4_21601 [Corchorus olitorius] >OMP02996.1 hypothetical protein CCACVL1_02628 [Corchorus capsularis])

HSP 1 Score: 137.5 bits (345), Expect = 1.8e-29
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEG- 60
          MGGGGHG  TTYKGVT+H PKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEG 
Sbjct: 1  MGGGGHGGSTTYKGVTLHHPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 --HGHGD 65
            HGHGD
Sbjct: 61 DDHGHGD 67

BLAST of MELO3C017010.2 vs. NCBI nr
Match: XP_024989510.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cynara cardunculus var. scolymus])

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-29
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 0

Query: 4  GGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGHGHG 63
          GGHG GTTYKGVT+H PKRWHTVTGKG+CA+MWFW+LYRAKQDGPVVLGWRHPWEGHGHG
Sbjct: 3  GGHGHGTTYKGVTLHQPKRWHTVTGKGMCAMMWFWILYRAKQDGPVVLGWRHPWEGHGHG 62

Query: 64 D 65
          D
Sbjct: 63 D 63

BLAST of MELO3C017010.2 vs. TAIR10
Match: AT1G76200.1 (unknown protein)

HSP 1 Score: 133.7 bits (335), Expect = 4.7e-32
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0

Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEG- 60
          MGGGGHG G TYKGVT+H PK WHTVTGKGLCA+MWFW+LYRAKQDGPVV+GWRHPW+G 
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWDGH 60

Query: 61 --HGHGD 65
            HGHGD
Sbjct: 61 GDHGHGD 67

BLAST of MELO3C017010.2 vs. Swiss-Prot
Match: sp|Q8LDK3|NDUB2_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At1g76200 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.4e-31
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0

Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEG- 60
          MGGGGHG G TYKGVT+H PK WHTVTGKGLCA+MWFW+LYRAKQDGPVV+GWRHPW+G 
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWDGH 60

Query: 61 --HGHGD 65
            HGHGD
Sbjct: 61 GDHGHGD 67

BLAST of MELO3C017010.2 vs. TrEMBL
Match: tr|A0A1S3BV22|A0A1S3BV22_CUCME (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103493798 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.5e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDXXXXXHGH 73
          GHGDXXXXXHGH
Sbjct: 61 GHGDXXXXXHGH 72

BLAST of MELO3C017010.2 vs. TrEMBL
Match: tr|A0A0A0L0L4|A0A0A0L0L4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653460 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-33
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTT+KGVTIHPPKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGD 65
          GHGD
Sbjct: 61 GHGD 64

BLAST of MELO3C017010.2 vs. TrEMBL
Match: tr|A0A1R3K7H4|A0A1R3K7H4_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02628 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEG- 60
          MGGGGHG  TTYKGVT+H PKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEG 
Sbjct: 1  MGGGGHGGSTTYKGVTLHHPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 --HGHGD 65
            HGHGD
Sbjct: 61 DDHGHGD 67

BLAST of MELO3C017010.2 vs. TrEMBL
Match: tr|A0A1R3ISD8|A0A1R3ISD8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21601 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEG- 60
          MGGGGHG  TTYKGVT+H PKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEG 
Sbjct: 1  MGGGGHGGSTTYKGVTLHHPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 --HGHGD 65
            HGHGD
Sbjct: 61 DDHGHGD 67

BLAST of MELO3C017010.2 vs. TrEMBL
Match: tr|I3T978|I3T978_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.5e-29
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0

Query: 3  GGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGHG- 62
          GGGHG GTTYKGVT+H PKRWH VTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEGHG 
Sbjct: 2  GGGHGGGTTYKGVTVHTPKRWHAVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGD 61

Query: 63 HGD 65
          HGD
Sbjct: 62 HGD 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008452937.13.7e-35100.00PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis ... [more]
XP_004145533.14.5e-3396.88PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis ... [more]
XP_022936519.11.4e-2983.33NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata]... [more]
OMO85481.11.8e-2988.06hypothetical protein COLO4_21601 [Corchorus olitorius] >OMP02996.1 hypothetical ... [more]
XP_024989510.12.3e-2990.16NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cynara cardunculus ... [more]
Match NameE-valueIdentityDescription
AT1G76200.14.7e-3282.09unknown protein[more]
Match NameE-valueIdentityDescription
sp|Q8LDK3|NDUB2_ARATH8.4e-3182.09NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thali... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BV22|A0A1S3BV22_CUCME2.5e-35100.00NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucumis melo OX=3... [more]
tr|A0A0A0L0L4|A0A0A0L0L4_CUCSA3.0e-3396.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653460 PE=4 SV=1[more]
tr|A0A1R3K7H4|A0A1R3K7H4_COCAP1.2e-2988.06Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02628 PE=4 ... [more]
tr|A0A1R3ISD8|A0A1R3ISD8_9ROSI1.2e-2988.06Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21601 PE=4 SV=1[more]
tr|I3T978|I3T978_LOTJA4.5e-2990.48Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005739 mitochondrion
cellular_component GO:0070469 respiratory chain
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C017010.2.1MELO3C017010.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36987FAMILY NOT NAMEDcoord: 4..69