Cp4.1LG17g11110 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g11110
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RPM1 interacting protein 4 transcript protein
Location	Cp4.1LG17 : 8424279 .. 8425639 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGAGCTATTCTATTTCTTCTTCTTGTTCTTGATTTTGCCGTTTCTGTTTGTTTGGTTGCTGAGAAAAAGAAAAAGAAAAAGAAAATTAGAAAGTATCTGTGATTTGATATTGTGGGTATTAACTTAAATCTGGAAATTATGGGCGATGCAATGGAGTTTCTCTGTTCTTTCTCTGTTCTTCGATCTCACCTGTTGACTTTTATGAAACTTTCTTGATGATTCATTCAAATTTGTATAGTTTTGATTTGTAAAATGTGTTTTGTTGGAACAGCAGCGGTCACATGTTCCAGCTTTTGGGAACTGGGAAAGTGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCCATCAGAAACCCCAACGATCCTGAGGAATATCCAGAAATGTTCGCCGCCGAAAACACACCCAAAAAGGACGATTCTCCAGCTCCGGCGCCGATACCCATGACCCACGAGAGGAGGCAGAGCCGTGAATACGGCAGCTCCCCTGCCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGAACAGAGTATAGCATCGACCGCTCGCCTCTCCACCGCCAGGCAAAGCCGTCGGGAAGAGAGAGCCCAATGGTGGAGAACAAGGGGTCCGATGGTGGCTATGGAAATCGCGGGAAATCTAGAACGAAGCCGCTTCAGGCGGAAGGGACGGCGGTGCCGAAATTTGGGTCGTGGGATGTGAACAATCCGGCGTCGGCGGACGGTTTTACTCACATATTTGGTGAAGTTCGGAAGGAGAAGTTGGGGCCGGGAACGCCGCCGCGGCAGCCGCATTCTTCTTCGCCGTACAACAATCTTAATAACCCAAAAGCCGACAACAGCGCCAAGGTATTTAATTAACCTTTTTTTTTTTTTTTTTTTAAATTATAAAAATAAAGTAAAAAAAAAAATTGAAAATTAAAATATTTTCCCCCCTAATTTTTGGTGGCAGGGATGTTGCTGCTTTCCATGGCTAAGTAAATAAGTTTGAACTGTGTGGGCTTTTACTGTGCGGACTGGGCTCTGTTTATGAACTATATGGGCTTTTACTGTGGGCTCTGTTTATCGACTGTGTGGGCTTTCACTGTGCAGACTGGGCTCTGTTTATGAACTATGTGGGCTTTTACTTTGGGCTCTGTTTATAGACTGTGTGGGCTTTTACTGTGCAGACTGGGCTCTGTTTATGAACTATGGGCTTTTACTGTGGGCTCTGTTTATAGACTGTGTGGGCTTTTACTGTGCAGACTGGGCTCTGTTTATGAACTGTGTGGGCTTTTTTGTATTTATTTTTATATATAAATTTCCTTAATTCTTTTGTAGCTCATGTAA

mRNA sequence

ATGGCGCAGCGGTCACATGTTCCAGCTTTTGGGAACTGGGAAAGTGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCCATCAGAAACCCCAACGATCCTGAGGAATATCCAGAAATGTTCGCCGCCGAAAACACACCCAAAAAGGACGATTCTCCAGCTCCGGCGCCGATACCCATGACCCACGAGAGGAGGCAGAGCCGTGAATACGGCAGCTCCCCTGCCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGAACAGAGTATAGCATCGACCGCTCGCCTCTCCACCGCCAGGCAAAGCCGTCGGGAAGAGAGAGCCCAATGGTGGAGAACAAGGGGTCCGATGGTGGCTATGGAAATCGCGGGAAATCTAGAACGAAGCCGCTTCAGGCGGAAGGGACGGCGGTGCCGAAATTTGGGTCGTGGGATGTGAACAATCCGGCGTCGGCGGACGGTTTTACTCACATATTTGGTGAAGTTCGGAAGGAGAAGTTGGGGCCGGGAACGCCGCCGCGGCAGCCGCATTCTTCTTCGCCGTACAACAATCTTAATAACCCAAAAGCCGACAACAGCGCCAAGCTCATGTAA

Coding sequence (CDS)

ATGGCGCAGCGGTCACATGTTCCAGCTTTTGGGAACTGGGAAAGTGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCCATCAGAAACCCCAACGATCCTGAGGAATATCCAGAAATGTTCGCCGCCGAAAACACACCCAAAAAGGACGATTCTCCAGCTCCGGCGCCGATACCCATGACCCACGAGAGGAGGCAGAGCCGTGAATACGGCAGCTCCCCTGCCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGAACAGAGTATAGCATCGACCGCTCGCCTCTCCACCGCCAGGCAAAGCCGTCGGGAAGAGAGAGCCCAATGGTGGAGAACAAGGGGTCCGATGGTGGCTATGGAAATCGCGGGAAATCTAGAACGAAGCCGCTTCAGGCGGAAGGGACGGCGGTGCCGAAATTTGGGTCGTGGGATGTGAACAATCCGGCGTCGGCGGACGGTTTTACTCACATATTTGGTGAAGTTCGGAAGGAGAAGTTGGGGCCGGGAACGCCGCCGCGGCAGCCGCATTCTTCTTCGCCGTACAACAATCTTAATAACCCAAAAGCCGACAACAGCGCCAAGCTCATGTAA

Protein sequence

MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFAAENTPKKDDSPAPAPIPMTHERRQSREYGSSPAHRENPSRKQSGTEYSIDRSPLHRQAKPSGRESPMVENKGSDGGYGNRGKSRTKPLQAEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSSSPYNNLNNPKADNSAKLM

Homology

[Close]

BLAST of Cp4.1LG17g11110 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-23
Identity = 83/208 (39.90%), Postives = 102/208 (49.04%), Query Frame = 1


Query: 4   RSHVPAFGNWESEGNVPYTVFFDKARKGRG-GGPIRNPNDPEEYPEMFAAENTPKKDDSP 63
           RS+VP FGNWE+E NVPYT +FDKARK R  G  I NPNDPE         N+  +  +P
Sbjct: 3   RSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEY--------NSDSQSQAP 62

Query: 64  APAPIPMTHER-----RQSREYGSSPAHRENPSRKQSGTEY-SIDRSPLHRQAKPSGRES 123
              P   T        R+SRE+  S   RE    KQ G    S + +   RQ + S   S
Sbjct: 63  PHPPSSRTKPEQVDTVRRSREHMRS---REESELKQFGDAGGSSNEAANKRQGRASQNNS 122

Query: 124 PMVENKGSDGGYGNRGKSRTKPLQAEG-------TAVPKFGSWDVNNPASADGFTHIFGE 183
              ++      Y   GKSR KP            T VPKFG WD NNP+SADG+THIF +
Sbjct: 123 YDNKSPLHKNSYDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNK 182

Query: 184 VRKEK------LGPGTPPRQPHSSSPYN 192
           VR+E+       G    P    S +P N
Sbjct: 183 VREERSSGANVSGSSRTPTHQSSRNPNN 199

[Close]

BLAST of Cp4.1LG17g11110 vs. Swiss-Prot
Match: NOIL_ELAOL (NOI-like protein OS=Elaeis oleifera PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06
Identity = 35/94 (37.23%), Postives = 48/94 (51.06%), Query Frame = 1


Query: 1  MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRG-GGPIRNPNDPEEYPEMFAAENTPKKD 60
          MAQ +HVP FGNW+ E N+ YT +F+   + +G G  I NPNDPEE P+ F    T  +D
Sbjct: 1  MAQPAHVPKFGNWDGE-NISYTTYFETVHRDKGDGSKIFNPNDPEENPQAF-YPRTVAQD 60

Query: 61 DSPAPAPIPMTHERRQSREYGSSPAHRENPSRKQ 94
             +       H    S +Y     HR    R++
Sbjct: 61 HQHSE-----KHHNDTSTDYHVVKQHRRKHHRRE 87

[Close]

BLAST of Cp4.1LG17g11110 vs. TrEMBL
Match: A0A0A0K570_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G343300 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74
Identity = 151/215 (70.23%), Postives = 168/215 (78.14%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFA--AENTPKK 60
           MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYP++F   +   P  
Sbjct: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPDIFMDNSHEAPPS 60

Query: 61  DDSP---APAPIPMTHERRQSRE------YGSSPAHRENPSRKQSGTEYSIDRSPLHRQA 120
             SP    P P P THERRQSRE      Y +SP +REN  R+QSG+EYSIDRSPLHRQA
Sbjct: 61  KPSPKDDTPPPKPTTHERRQSREDGGFRPYANSPGNRENQGRRQSGSEYSIDRSPLHRQA 120

Query: 121 KPSGRESPMVENKGSDGGYGNRGKSRTK-PLQAEGTAVPKFGSWDVNNPASADGFTHIFG 180
           KPS R+S M E K  +G Y NRGK++TK     EGTA+PKFGSWDVNNPASADGFTHIFG
Sbjct: 121 KPSARDSSMTEGKSFEGNYDNRGKTKTKNNSPPEGTALPKFGSWDVNNPASADGFTHIFG 180

Query: 181 EVRKEKLGPGTPPRQPHSSSPYNNLNNPKADNSAK 204
           +VR+E+LGPGTP    HSSSPYNN NN + D+SAK
Sbjct: 181 KVREERLGPGTP---QHSSSPYNNANNGRPDDSAK 212

[Close]

BLAST of Cp4.1LG17g11110 vs. TrEMBL
Match: M5VNG2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010450mg PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 115/248 (46.37%), Postives = 147/248 (59.27%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGR--GGGPIRNPNDPEEYPEMF----AAEN 60
           M QRSHVP FGNWE E NVPYT +FDKARKGR   GG + NPNDP++  +M     ++ +
Sbjct: 1   MTQRSHVPKFGNWEGEENVPYTAYFDKARKGRTGPGGKMINPNDPQQNQDMLSDISSSAS 60

Query: 61  TPKKDDSPAPAPIPMTHERRQSRE------YGSSPAHREN-------------------- 120
           +P K  +    P+   HERR+SRE      + +SPAHREN                    
Sbjct: 61  SPPKVRAEPERPV---HERRRSREDNDLRQFANSPAHRENLGRRTSGEAANQPNRGRGVS 120

Query: 121 -------PSRKQSGTEYSIDRSPLHRQAKPSGRESPMVENKGS-DGGYGNRGKSRTKPLQ 180
                  P+R  SG+EYS++RSPLHR A+ SGR+SP  E K S +  +G  G+SR KP  
Sbjct: 121 SGETHRKPARPSSGSEYSVERSPLHRNARVSGRDSPSWEGKPSYESSHGTPGRSRLKPRD 180

Query: 181 ---AEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLG--PGTPPRQPHSSSPYNNLNN 204
               +G AVPKFG WD N+PASADGFTHIF +VR+EK G  PGTP     S S Y++   
Sbjct: 181 ESPEKGAAVPKFGEWDENDPASADGFTHIFNKVREEKAGKVPGTP-----SQSSYHDARK 240

[Close]

BLAST of Cp4.1LG17g11110 vs. TrEMBL
Match: A0A061DV43_THECC (RPM1 interacting protein 4, putative OS=Theobroma cacao GN=TCM_002874 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.0e-40
Identity = 111/254 (43.70%), Postives = 134/254 (52.76%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMF---------- 60
           MAQ SHVP FGNWESE NVPYT +FDKARKGR GG I NPNDP+E P++           
Sbjct: 1   MAQHSHVPKFGNWESEENVPYTAYFDKARKGRTGGKIVNPNDPQESPDLHYDYVAPTRAS 60

Query: 61  -AAENTPKKDDSPAPAPIPMTHERRQSRE------YGSSPAHREN--------------- 120
            A+   P+ D+     P    HER +SRE      Y  SP+H +N               
Sbjct: 61  PASRAKPELDEPVGHGPTRRAHERGRSREEGELKQYADSPSHHDNVNRRASGDSTPSRYG 120

Query: 121 -----------PSRKQSGTEYSIDRSPLHRQAK--PSGRESPMVENKGS-DGGYGNRGKS 180
                      P+R   G+E SIDRSPLH QA+       SP  E K S D  +G  G+S
Sbjct: 121 RGVNVGEAPKRPARSSIGSENSIDRSPLHHQARVGRGSMASPAWEGKNSYDSSHGTPGRS 180

Query: 181 RTKPLQA------EGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSSS 203
           R +P         +G AVPKFG WD NNPASADG+THIF +VR+E+   G  P  P   S
Sbjct: 181 RMRPSTRGDESPDKGAAVPKFGDWDENNPASADGYTHIFNKVREERNNGGRVPGMPGEQS 240

[Close]

BLAST of Cp4.1LG17g11110 vs. TrEMBL
Match: V7AKN6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G021200g PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39
Identity = 106/221 (47.96%), Postives = 128/221 (57.92%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFAAENTPKKDD 60
           MAQRSHVP FGNW+S  NVPYT +FDKARKGR G  I NPNDPEE  ++    + P  + 
Sbjct: 1   MAQRSHVPKFGNWDSGDNVPYTAYFDKARKGRTGAKIINPNDPEENSDL--GLDNPSSEH 60

Query: 61  SPAPAP------------------------IPMTHE----RRQSREYGSSPA-HRENPSR 120
            P P P                         P  H+    R  SR +G  PA +R  PS 
Sbjct: 61  LPPPKPRVSSEDPSGKGSLHLEDDPKPFIDSPARHDNASNRSGSRSHGVPPADNRRRPSM 120

Query: 121 KQSGTEYSIDRSPLHRQAKPSGRESPMVENKGS-DGGYGNRGKSRTKPLQA------EGT 180
           + +G+E+SIDRSPLHRQA+P GR+SP+ E K S D   G  G+SR +          +G 
Sbjct: 121 QSAGSEHSIDRSPLHRQARPPGRDSPLWEPKNSYDNIQGTPGRSRLRQANRGDETPDKGA 180

[Close]

BLAST of Cp4.1LG17g11110 vs. TrEMBL
Match: C6TH04_SOYBN (RINb protein OS=Glycine max GN=RIN4b PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-39
Identity = 110/236 (46.61%), Postives = 134/236 (56.78%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFAAENTPKKDD 60
           MAQRSHVP FGNW+S  NVPYT +FDKARKGR G  I NPNDPEE  ++  + + P  D+
Sbjct: 1   MAQRSHVPKFGNWDSGENVPYTAYFDKARKGRTGTRIINPNDPEENADL--SFDNPSSDN 60

Query: 61  SPAPAP------------------------IPMTHE----RRQSREYG-SSPAHRENPSR 120
            P   P                         P  H+    R  SR +G  S  +R   S 
Sbjct: 61  LPPTRPRTNSEDQSGKGSLHLEDDPKNFIESPARHDNVSSRSGSRSHGVGSADNRRRHST 120

Query: 121 KQSGTEYSIDRSPLHRQAKPSGRESPMVENKGS-DGGYGNRGKSRTKPLQA------EGT 180
           + +G+EYSI+RSPLHRQA+  GR+SP  E K S D   G  G+SR +P         +G 
Sbjct: 121 QSTGSEYSIERSPLHRQARAPGRDSPQWEPKNSYDSSQGTPGRSRLRPANRGDETPDKGA 180

Query: 181 AVPKFGSWDVNNPASADGFTHIFGEVRKEKLG-----PGTPPRQPHSSSPYNNLNN 196
           AVPKFG WDVNNPASADGFTHIF +VR+E+ G     PGTP  +P    P N L+N
Sbjct: 181 AVPKFGDWDVNNPASADGFTHIFNKVREERQGGPGQVPGTPNERP---QPINGLSN 231

[Close]

BLAST of Cp4.1LG17g11110 vs. TAIR10
Match: AT3G25070.1 (AT3G25070.1 RPM1 interacting protein 4)

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-24
Identity = 83/208 (39.90%), Postives = 102/208 (49.04%), Query Frame = 1


Query: 4   RSHVPAFGNWESEGNVPYTVFFDKARKGRG-GGPIRNPNDPEEYPEMFAAENTPKKDDSP 63
           RS+VP FGNWE+E NVPYT +FDKARK R  G  I NPNDPE         N+  +  +P
Sbjct: 3   RSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEY--------NSDSQSQAP 62

Query: 64  APAPIPMTHER-----RQSREYGSSPAHRENPSRKQSGTEY-SIDRSPLHRQAKPSGRES 123
              P   T        R+SRE+  S   RE    KQ G    S + +   RQ + S   S
Sbjct: 63  PHPPSSRTKPEQVDTVRRSREHMRS---REESELKQFGDAGGSSNEAANKRQGRASQNNS 122

Query: 124 PMVENKGSDGGYGNRGKSRTKPLQAEG-------TAVPKFGSWDVNNPASADGFTHIFGE 183
              ++      Y   GKSR KP            T VPKFG WD NNP+SADG+THIF +
Sbjct: 123 YDNKSPLHKNSYDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNK 182

Query: 184 VRKEK------LGPGTPPRQPHSSSPYN 192
           VR+E+       G    P    S +P N
Sbjct: 183 VREERSSGANVSGSSRTPTHQSSRNPNN 199

[Close]

BLAST of Cp4.1LG17g11110 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-07
Identity = 28/62 (45.16%), Postives = 35/62 (56.45%), Query Frame = 1


Query: 142 EGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSSSPYNNLNNPKADNS 201
           +G  +PKFG WDVN+P+SA+GFT IF + R EK G G     P    P  N N    +  
Sbjct: 4   KGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSD-SPGKDEPGYNKNGEVLEKP 63

Query: 202 AK 204
           AK
Sbjct: 64  AK 64

[Close]

BLAST of Cp4.1LG17g11110 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-07
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1


Query: 142 EGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSS 188
           +G  +PKFG WDVN+PASA+GFT IF + R EK   G P     SS
Sbjct: 20  KGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSS 65

[Close]

BLAST of Cp4.1LG17g11110 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-07
Identity = 32/70 (45.71%), Postives = 40/70 (57.14%), Query Frame = 1


Query: 142 EGTAVPKFGSWDVNNPASADGFTHIFGEVRKEK-------LGPGT--PPRQPHSSSPYNN 201
           +G  +PKFG WDVNNPASA+GFT IF +   EK        GP +   P++  +S   NN
Sbjct: 5   KGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQNNN 64

[Close]

BLAST of Cp4.1LG17g11110 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-06
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 1


Query: 134 SRTKPLQAEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEK 175
           S  +  Q +   +PKFG WDVN+PASA+GFT IF + R +K
Sbjct: 3   SNNQQRQQQDRPLPKFGEWDVNDPASAEGFTVIFAKARDDK 43

[Close]

BLAST of Cp4.1LG17g11110 vs. NCBI nr
Match: gi|659116341|ref|XP_008458026.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 5.4e-75
Identity = 153/217 (70.51%), Postives = 171/217 (78.80%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMF------AAEN 60
           MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYP++       A  +
Sbjct: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPDILIDNSHEAPPS 60

Query: 61  TPK-KDDSPAPAPIPMTHERRQSRE------YGSSPAHRENPSRKQSGTEYSIDRSPLHR 120
            P  KDD+P P   P THERR SRE      Y +SP +RENP R+QSG++YSIDRSPLHR
Sbjct: 61  KPSLKDDTPPPK--PTTHERRHSREDGGFRPYANSPGNRENPGRRQSGSDYSIDRSPLHR 120

Query: 121 QAKPSGRESPMVENKGSDGGYGNRGKSRTK-PLQAEGTAVPKFGSWDVNNPASADGFTHI 180
           QAKPS R+S M E K  +G Y NRGK++TK     EGTAVPKFGSWDVNNPASADGFTHI
Sbjct: 121 QAKPSARDSSMTEGKSFEGSYDNRGKTKTKNNSPPEGTAVPKFGSWDVNNPASADGFTHI 180

Query: 181 FGEVRKEKLGPGTPPRQPHSSSPYNNLNNPKADNSAK 204
           FG+VR+E+LGPGTPP Q HSSSPYNN NN + D+S K
Sbjct: 181 FGKVREERLGPGTPPPQ-HSSSPYNNANNRRPDDSVK 214

[Close]

BLAST of Cp4.1LG17g11110 vs. NCBI nr
Match: gi|778726982|ref|XP_004139625.2| (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 2.0e-74
Identity = 151/215 (70.23%), Postives = 168/215 (78.14%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFA--AENTPKK 60
           MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYP++F   +   P  
Sbjct: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPDIFMDNSHEAPPS 60

Query: 61  DDSP---APAPIPMTHERRQSRE------YGSSPAHRENPSRKQSGTEYSIDRSPLHRQA 120
             SP    P P P THERRQSRE      Y +SP +REN  R+QSG+EYSIDRSPLHRQA
Sbjct: 61  KPSPKDDTPPPKPTTHERRQSREDGGFRPYANSPGNRENQGRRQSGSEYSIDRSPLHRQA 120

Query: 121 KPSGRESPMVENKGSDGGYGNRGKSRTK-PLQAEGTAVPKFGSWDVNNPASADGFTHIFG 180
           KPS R+S M E K  +G Y NRGK++TK     EGTA+PKFGSWDVNNPASADGFTHIFG
Sbjct: 121 KPSARDSSMTEGKSFEGNYDNRGKTKTKNNSPPEGTALPKFGSWDVNNPASADGFTHIFG 180

Query: 181 EVRKEKLGPGTPPRQPHSSSPYNNLNNPKADNSAK 204
           +VR+E+LGPGTP    HSSSPYNN NN + D+SAK
Sbjct: 181 KVREERLGPGTP---QHSSSPYNNANNGRPDDSAK 212

[Close]

BLAST of Cp4.1LG17g11110 vs. NCBI nr
Match: gi|595797017|ref|XP_007201227.1| (hypothetical protein PRUPE_ppa010450mg [Prunus persica])

HSP 1 Score: 181.4 bits (459), Expect = 1.6e-42
Identity = 115/248 (46.37%), Postives = 147/248 (59.27%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGR--GGGPIRNPNDPEEYPEMF----AAEN 60
           M QRSHVP FGNWE E NVPYT +FDKARKGR   GG + NPNDP++  +M     ++ +
Sbjct: 1   MTQRSHVPKFGNWEGEENVPYTAYFDKARKGRTGPGGKMINPNDPQQNQDMLSDISSSAS 60

Query: 61  TPKKDDSPAPAPIPMTHERRQSRE------YGSSPAHREN-------------------- 120
           +P K  +    P+   HERR+SRE      + +SPAHREN                    
Sbjct: 61  SPPKVRAEPERPV---HERRRSREDNDLRQFANSPAHRENLGRRTSGEAANQPNRGRGVS 120

Query: 121 -------PSRKQSGTEYSIDRSPLHRQAKPSGRESPMVENKGS-DGGYGNRGKSRTKPLQ 180
                  P+R  SG+EYS++RSPLHR A+ SGR+SP  E K S +  +G  G+SR KP  
Sbjct: 121 SGETHRKPARPSSGSEYSVERSPLHRNARVSGRDSPSWEGKPSYESSHGTPGRSRLKPRD 180

Query: 181 ---AEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLG--PGTPPRQPHSSSPYNNLNN 204
               +G AVPKFG WD N+PASADGFTHIF +VR+EK G  PGTP     S S Y++   
Sbjct: 181 ESPEKGAAVPKFGEWDENDPASADGFTHIFNKVREEKAGKVPGTP-----SQSSYHDARK 240

[Close]

BLAST of Cp4.1LG17g11110 vs. NCBI nr
Match: gi|645259630|ref|XP_008235453.1| (PREDICTED: RPM1-interacting protein 4-like [Prunus mume])

HSP 1 Score: 179.9 bits (455), Expect = 4.6e-42
Identity = 115/248 (46.37%), Postives = 146/248 (58.87%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGR--GGGPIRNPNDPEEYPEMF----AAEN 60
           MAQRSHVP FGNWE E NVPYT +FDKARKGR   GG + NPNDP++  +M     ++ +
Sbjct: 1   MAQRSHVPKFGNWEGEENVPYTAYFDKARKGRTGPGGKMINPNDPQQNQDMLSDISSSAS 60

Query: 61  TPKKDDSPAPAPIPMTHERRQSRE------YGSSPAHREN-------------------- 120
           +P K  +    P+    ERR+SRE      + +SPAHREN                    
Sbjct: 61  SPPKFRAEPERPV---DERRRSREDNDLRQFANSPAHRENLGRRTSGEAANQPNRGRGVS 120

Query: 121 -------PSRKQSGTEYSIDRSPLHRQAKPSGRESPMVENKGS-DGGYGNRGKSRTKPLQ 180
                  P+R  SG+EYS++RSPLHR A+ SGR+SP  E K S +  +G  G+SR KP  
Sbjct: 121 SGETHRKPARPSSGSEYSVERSPLHRNARVSGRDSPSWEGKASYESSHGTPGRSRLKPRD 180

Query: 181 ---AEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLG--PGTPPRQPHSSSPYNNLNN 204
               +G AVPKFG WD N+PASADGFTHIF +VR+EK G  PGTP     S S Y +   
Sbjct: 181 ESPEKGAAVPKFGEWDENDPASADGFTHIFNKVREEKAGKAPGTP-----SQSSYQDARK 240

[Close]

BLAST of Cp4.1LG17g11110 vs. NCBI nr
Match: gi|590713743|ref|XP_007049721.1| (RPM1 interacting protein 4, putative [Theobroma cacao])

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 111/254 (43.70%), Postives = 134/254 (52.76%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMF---------- 60
           MAQ SHVP FGNWESE NVPYT +FDKARKGR GG I NPNDP+E P++           
Sbjct: 1   MAQHSHVPKFGNWESEENVPYTAYFDKARKGRTGGKIVNPNDPQESPDLHYDYVAPTRAS 60

Query: 61  -AAENTPKKDDSPAPAPIPMTHERRQSRE------YGSSPAHREN--------------- 120
            A+   P+ D+     P    HER +SRE      Y  SP+H +N               
Sbjct: 61  PASRAKPELDEPVGHGPTRRAHERGRSREEGELKQYADSPSHHDNVNRRASGDSTPSRYG 120

Query: 121 -----------PSRKQSGTEYSIDRSPLHRQAK--PSGRESPMVENKGS-DGGYGNRGKS 180
                      P+R   G+E SIDRSPLH QA+       SP  E K S D  +G  G+S
Sbjct: 121 RGVNVGEAPKRPARSSIGSENSIDRSPLHHQARVGRGSMASPAWEGKNSYDSSHGTPGRS 180

Query: 181 RTKPLQA------EGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSSS 203
           R +P         +G AVPKFG WD NNPASADG+THIF +VR+E+   G  P  P   S
Sbjct: 181 RMRPSTRGDESPDKGAAVPKFGDWDENNPASADGYTHIFNKVREERNNGGRVPGMPGEQS 240

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g11110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIN4_ARATH	4.8e-23	39.90	RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1	[more]
NOIL_ELAOL	1.8e-06	37.23	NOI-like protein OS=Elaeis oleifera PE=2 SV=1	[more]

BLAST of Cp4.1LG17g11110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K570_CUCSA	1.4e-74	70.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G343300 PE=4 SV=1	[more]
M5VNG2_PRUPE	1.1e-42	46.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010450mg PE=4 SV=1	[more]
A0A061DV43_THECC	1.0e-40	43.70	RPM1 interacting protein 4, putative OS=Theobroma cacao GN=TCM_002874 PE=4 SV=1	[more]
V7AKN6_PHAVU	1.1e-39	47.96	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G021200g PE=4 SV=1	[more]
C6TH04_SOYBN	1.5e-39	46.61	RINb protein OS=Glycine max GN=RIN4b PE=2 SV=1	[more]

BLAST of Cp4.1LG17g11110 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25070.1	2.7e-24	39.90	RPM1 interacting protein 4	[more]
AT2G04410.1	3.0e-07	45.16	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	3.9e-07	54.35	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	3.9e-07	45.71	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	2.5e-06	51.22	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of Cp4.1LG17g11110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116341\|ref\|XP_008458026.1\|	5.4e-75	70.51	PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]	[more]
gi\|778726982\|ref\|XP_004139625.2\|	2.0e-74	70.23	PREDICTED: RPM1-interacting protein 4 [Cucumis sativus]	[more]
gi\|595797017\|ref\|XP_007201227.1\|	1.6e-42	46.37	hypothetical protein PRUPE_ppa010450mg [Prunus persica]	[more]
gi\|645259630\|ref\|XP_008235453.1\|	4.6e-42	46.37	PREDICTED: RPM1-interacting protein 4-like [Prunus mume]	[more]
gi\|590713743\|ref\|XP_007049721.1\|	1.5e-40	43.70	RPM1 interacting protein 4, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0045087	innate immune response
biological_process	GO:0051301	cell division
biological_process	GO:0008283	cell proliferation
biological_process	GO:0006306	DNA methylation
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0048229	gametophyte development
biological_process	GO:0051567	histone H3-K9 methylation
biological_process	GO:0006279	premeiotic DNA replication
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g11110.1	Cp4.1LG17g11110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 141..174 score: 3.3
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 1..174 score: 1.6
None	No IPR available	PANTHER	PTHR33159:SF6	RPM1-INTERACTING PROTEIN 4	coord: 1..174 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g11110	Cucsa.078160	Cucumber (Gy14) v1	cgycpeB0134
Cp4.1LG17g11110	CmaCh17G012710	Cucurbita maxima (Rimu)	cmacpeB379
Cp4.1LG17g11110	CmaCh08G002250	Cucurbita maxima (Rimu)	cmacpeB914
Cp4.1LG17g11110	CmoCh08G002240	Cucurbita moschata (Rifu)	cmocpeB851
Cp4.1LG17g11110	CmoCh17G012410	Cucurbita moschata (Rifu)	cmocpeB343
Cp4.1LG17g11110	Cla014936	Watermelon (97103) v1	cpewmB317
Cp4.1LG17g11110	Csa7G343300	Cucumber (Chinese Long) v2	cpecuB337
Cp4.1LG17g11110	MELO3C021057	Melon (DHL92) v3.5.1	cpemeB294
Cp4.1LG17g11110	ClCG09G008810	Watermelon (Charleston Gray)	cpewcgB285
Cp4.1LG17g11110	CSPI07G14420	Wild cucumber (PI 183967)	cpecpiB338
Cp4.1LG17g11110	MELO3C021057.2	Melon (DHL92) v3.6.1	cpemedB342
Cp4.1LG17g11110	CsaV3_7G026140	Cucumber (Chinese Long) v3	cpecucB0416
Cp4.1LG17g11110	Bhi09G001111	Wax gourd	cpewgoB0421
Cp4.1LG17g11110	CsGy7G012990	Cucumber (Gy14) v2	cgybcpeB925
Cp4.1LG17g11110	Carg05048	Silver-seed gourd	carcpeB0125
Cp4.1LG17g11110	Carg11450	Silver-seed gourd	carcpeB0020

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG17g11110	Cp4.1LG12g11050	Cucurbita pepo (Zucchini)	cpecpeB160

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g11110	Bottle gourd (USVL1VR-Ls)	cpelsiB258