Carg11450 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11450
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RPM1-interacting protein 4
Location	Cucurbita_argyrosperma_scaffold_083 : 4322 .. 6754 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTAAAGTTGTCTCTGATATTTTCCTGATCCAACGATCAAAAACGAACCAAAACCTCATCTTTGTCTTTCCCGTCAGACCCATCACTCTGTTCTTCTTCAATGGCGGTGAGTTCTTCTATTTTCATCATCTTCTTGTTCTTCCTGTTCTTTTGACTTTCCTTTCTGTTTGGTTGCTGAGAAAATCCGAGAAAAATTAAGAGAAAATTGGGATTTTGTTGTTTTTAACTGTTTTGTTCAGCGGCTGTTGTACGGTAGATCTGAAACTGAATTTGTTCTGTAGATCAGTTTTAATCCATCGTTTGAAGATGGGGTTTCTCTGTTCTTTGATTTAACCTTTTTGACTTTTTTTTTTTTTTTTTAACTCATGAAGTAATTGTTTATTTAAGTGTCTAAAGATTTTAGTTCTTTTTGTTATGAATCTCGAGAATAGTATGATGTTGTCTACTAATCTACACAATCGTATGGTGTTGTTTACTTTGATCGTGAGCTCTGATGGTTTTTGTTTTTGTTTATAAATTCATGATTATCCTCTAAATTAGTCGGTGAGATTCTCATCCGACAATTCTCTCCTCGAAAAAGTACATCATAGAGTCTCCTCTGATGCCTATAGAGCCCTTGAACAGTCTCTCCTTAGCTGAGACTCGATTCCTTTCTTTGGAGCCCTCACGCCCTTTGTTAGAGTCTCCCATGAGGCCTATAGTGCCCTCAAATAGCATCCCTTAATTGAGGCCGGACTCCTTTCTTTAGAGCCTTCGCACCTTTTGTTAGAGTCTCCTTTGAGACCTATAGATCCCTTGAAACTTGAGTCACTTTTTTTACTACACATTCGAGACTCATAGCTTTTTTTGTTTGATATTTGATGATTTTATTTGCATGGCTAAGTTAAAAGTATGACTCGATACAATGTTAGGAACCACAATTTACATGACTTCACGATATTATCCACTTTGAGCATAAACTCTCGTGATTTTGTTTTTGGTTTCTCCAAAATAACCTGTATCAATAAATATGTATTCTTTACTTATAATTTCATGATCATCCTCTAAATTAGCGAATGTGAAACTCCCTCCAAACAATTCTACAACACTTTCACATGTGTTAGATTCAGAATTCAATCAAATTTTGTTTTGAAAAATGGGTTTTGTTGGGACAGCAACGATCACACGTACCAGCTTTTGGAAATTGGGAAAACGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCAATCAGAAACCCAAACGATCCTGAGGAATATCCAGAGATGTTCGCCGACAACTCCCATGAAGCTCCTCCGGTTAAACCCAACATTCCGGCACCAAAACCCACCACCCACGAGAAGAAACAGAGCCGCGAAGACGACGGTTATCACCCCTACGCCAACTCCCCTGGCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGCTCAGAGTATAGCATCGACCGCTCTCCTCTCCACCGCCACACAAAGCCATCGGGAAGAGAGAGCCCTGTGGTGGAGGGCAAGGGCTTCGACGGCGGCCATGGCAACCGTGGGAAGACCAGAATGAAGCCGGATGCTGTAAGCTTTTTGCCTTTTTTAACTCCTTGTTCGATTATTCACAAATCAGAACAGAACCCACAAATAAATTTTAAATCTTTCTTCCTTCGGCGTTGTATTTTGAAATGGTACATTTTGGTGGTGCAGCCGGAAGGGACGGCGGTGCCGAAGTTTGGATCGTGGGATGTGAACAATCCGGCGTCGGCCGACGGTTTTACCCACATTTTTGGTAAAGTCAGGGAGGAGAAGATGGGGCCGGGAACCCCGCCGCCGCCGCATTCTTCTTCGCCGTACAACAATGTTCATAACCAAAGACCCGACGACAGCGCCAAGGTAATTCAGCTCCCTTTCTTTTCATTCTTATTAAATAAATTATAAATTATAAATTATAAATGGTATAATTAAATATTAAATAATATATTATGAGAAAATGAAATTCTTTATTATTCTTATTTCTTATTTTATTTTAATTTTTATAATATATTTGCAGGGAGGGTGCTTCCCATGTCTAAGAAGAAAATAAGTTTCTTGGCGTTGTTCTTATTATCCTCTATTTTCATTATTATTATTCAATTTATTTGGGAAGAAATACTTATTTACTTCTAAAATTACTTTTTGTTTAAAAAAAAAAAAATCGTGTAATTCTCTTTATGTCTTGCCATAGTTACAGTCTCGGGTAATTTTCTTATTTGGAAACAATATAAATATGCTTTTAGGATAAGCCGAAAGCATTCTAAAACGATTTACGAGAATGTGCAAAGAGTCGTTCGCTTCTTGACTTGTGATGAAGTAAAATTTTTGTGATTCATTTGTAAGGTCGTTAGGGCGTTGATTTGAGACACTTTTGTTTTGTTGTTGCTCTAAC

mRNA sequence

TCTAAAGTTGTCTCTGATATTTTCCTGATCCAACGATCAAAAACGAACCAAAACCTCATCTTTGTCTTTCCCGTCAGACCCATCACTCTGTTCTTCTTCAATGGCGGCCAGAAAGGGCAGAGGCGGCGGACCAATCAGAAACCCAAACGATCCTGAGGAATATCCAGAGATGTTCGCCGACAACTCCCATGAAGCTCCTCCGGTTAAACCCAACATTCCGGCACCAAAACCCACCACCCACGAGAAGAAACAGAGCCGCGAAGACGACGGTTATCACCCCTACGCCAACTCCCCTGGCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGCTCAGAGTATAGCATCGACCGCTCTCCTCTCCACCGCCACACAAAGCCATCGGGAAGAGAGAGCCCTGTGGTGGAGGGCAAGGGCTTCGACGGCGGCCATGGCAACCGTGGGAAGACCAGAATGAAGCCGGATGCTGTAAGCTTTTTGCCTTTTTTAACTCCTTGTTCGATTATTCACAAATCAGAACAGAACCCACAAATAAATTTTAAATCTTTCTTCCTTCGGCGTTGTATTTTGAAATGGTACATTTTGGTGGTGCAGCCGGAAGGGACGGCGGTGCCGAAGTTTGGATCGTGGGATGTGAACAATCCGGCGTCGGCCGACGGTTTTACCCACATTTTTGGTAAAGTCAGGGAGGAGAAGATGGGGCCGGGAACCCCGCCGCCGCCGCATTCTTCTTCGCCGTACAACAATGTTCATAACCAAAGACCCGACGACAGCGCCAAGGGAGGGTGCTTCCCATGTCTAAGAAGAAAATAAGTTTCTTGGCGTTGTTCTTATTATCCTCTATTTTCATTATTATTATTCAATTTATTTGGGAAGAAATACTTATTTACTTCTAAAATTACTTTTTGTTTAAAAAAAAAAAAATCGTGTAATTCTCTTTATGTCTTGCCATAGTTACAGTCTCGGGTAATTTTCTTATTTGGAAACAATATAAATATGCTTTTAGGATAAGCCGAAAGCATTCTAAAACGATTTACGAGAATGTGCAAAGAGTCGTTCGCTTCTTGACTTGTGATGAAGTAAAATTTTTGTGATTCATTTGTAAGGTCGTTAGGGCGTTGATTTGAGACACTTTTGTTTTGTTGTTGCTCTAAC

Coding sequence (CDS)

ATGGCGGCCAGAAAGGGCAGAGGCGGCGGACCAATCAGAAACCCAAACGATCCTGAGGAATATCCAGAGATGTTCGCCGACAACTCCCATGAAGCTCCTCCGGTTAAACCCAACATTCCGGCACCAAAACCCACCACCCACGAGAAGAAACAGAGCCGCGAAGACGACGGTTATCACCCCTACGCCAACTCCCCTGGCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGCTCAGAGTATAGCATCGACCGCTCTCCTCTCCACCGCCACACAAAGCCATCGGGAAGAGAGAGCCCTGTGGTGGAGGGCAAGGGCTTCGACGGCGGCCATGGCAACCGTGGGAAGACCAGAATGAAGCCGGATGCTGTAAGCTTTTTGCCTTTTTTAACTCCTTGTTCGATTATTCACAAATCAGAACAGAACCCACAAATAAATTTTAAATCTTTCTTCCTTCGGCGTTGTATTTTGAAATGGTACATTTTGGTGGTGCAGCCGGAAGGGACGGCGGTGCCGAAGTTTGGATCGTGGGATGTGAACAATCCGGCGTCGGCCGACGGTTTTACCCACATTTTTGGTAAAGTCAGGGAGGAGAAGATGGGGCCGGGAACCCCGCCGCCGCCGCATTCTTCTTCGCCGTACAACAATGTTCATAACCAAAGACCCGACGACAGCGCCAAGGGAGGGTGCTTCCCATGTCTAAGAAGAAAATAA

Protein sequence

MAARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHTKPSGRESPVVEGKGFDGGHGNRGKTRMKPDAVSFLPFLTPCSIIHKSEQNPQINFKSFFLRRCILKWYILVVQPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNQRPDDSAKGGCFPCLRRK

Homology

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BLAST of Carg11450 vs. NCBI nr
Match: XP_022953250.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022991999.1 RPM1-interacting protein 4-like [Cucurbita maxima])

HSP 1 Score: 367.1 bits (941), Expect = 4.5e-98
Identity = 183/234 (78.21%), Postives = 184/234 (78.63%), Query Frame = 0


Query: 3   ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHPYA 62
           ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHPYA
Sbjct: 28  ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHPYA 87

Query: 63  NSPGHRENPSRKQSGSEYSIDRSPLHRHTKPSGRESPVVEGKGFDGGHGNRGKTRMKPDA 122
           NSPGHRENPSRKQSGSEYSIDRSPLHRH KPSGRESPVVEGKGFDGGHGNRGKTRMKPDA
Sbjct: 88  NSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESPVVEGKGFDGGHGNRGKTRMKPDA 147

Query: 123 VSFLPFLTPCSIIHKSEQNPQINFKSFFLRRCILKWYILVVQPEGTAVPKFGSWDVNNPA 182
                                                     PEGTAVPKFGSWDVNNPA
Sbjct: 148 ------------------------------------------PEGTAVPKFGSWDVNNPA 207

Query: 183 SADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNQRPDDSAKGGCFPCLRRK 237
           SADGFTHIFGKVREEKMGPGTP       PYNNVHN+RPDDSAKGGCFPCLRRK
Sbjct: 208 SADGFTHIFGKVREEKMGPGTPXXXXXXXPYNNVHNRRPDDSAKGGCFPCLRRK 219

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BLAST of Carg11450 vs. NCBI nr
Match: XP_023547760.1 (RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.2 bits (931), Expect = 6.6e-97
Identity = 181/234 (77.35%), Postives = 183/234 (78.21%), Query Frame = 0


Query: 3   ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHPYA 62
           ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKP IPAPKPTTHEKKQSREDDG+HPYA
Sbjct: 28  ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPTIPAPKPTTHEKKQSREDDGFHPYA 87

Query: 63  NSPGHRENPSRKQSGSEYSIDRSPLHRHTKPSGRESPVVEGKGFDGGHGNRGKTRMKPDA 122
           NSPGHRENPSRKQSGSEYSIDRSPLHRH KPSGRESPVVEGKGFDGGHGNRGKTRMKPDA
Sbjct: 88  NSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESPVVEGKGFDGGHGNRGKTRMKPDA 147

Query: 123 VSFLPFLTPCSIIHKSEQNPQINFKSFFLRRCILKWYILVVQPEGTAVPKFGSWDVNNPA 182
                                                     PEGTAVPKFGSWDVNNPA
Sbjct: 148 ------------------------------------------PEGTAVPKFGSWDVNNPA 207

Query: 183 SADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNQRPDDSAKGGCFPCLRRK 237
           SADGFTHIFGKVREEKMGPGTP       PYNNVHN+RPDDSAKGGCFPCLRRK
Sbjct: 208 SADGFTHIFGKVREEKMGPGTPXXXXXXXPYNNVHNRRPDDSAKGGCFPCLRRK 219

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BLAST of Carg11450 vs. NCBI nr
Match: XP_004139625.2 (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus] >KGN44613.1 hypothetical protein Csa_7G343300 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 6.8e-70
Identity = 144/239 (60.25%), Postives = 163/239 (68.20%), Query Frame = 0


Query: 3   ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPN----IPAPKPTTHEKKQSREDDGY 62
           ARKGRGGGPIRNPNDPEEYP++F DNSHEAPP KP+            HE++QSRED G+
Sbjct: 28  ARKGRGGGPIRNPNDPEEYPDIFMDNSHEAPPSKPSPKDXXXXXXXXXHERRQSREDGGF 87

Query: 63  HPYANSPGHRENPSRKQSGSEYSIDRSPLHRHTKPSGRESPVVEGKGFDGGHGNRGKTRM 122
            PYANSPG+REN  R+QSGSEYSIDRSPLHR  KPS R+S + EGK F+G + NRGKT+ 
Sbjct: 88  RPYANSPGNRENQGRRQSGSEYSIDRSPLHRQAKPSARDSSMTEGKSFEGNYDNRGKTKT 147

Query: 123 KPDAVSFLPFLTPCSIIHKSEQNPQINFKSFFLRRCILKWYILVVQPEGTAVPKFGSWDV 182
           K ++                                          PEGTA+PKFGSWDV
Sbjct: 148 KNNS-----------------------------------------PPEGTALPKFGSWDV 207

Query: 183 NNPASADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNQRPDDSAK-GGCFPCLRRK 237
           NNPASADGFTHIFGKVREE++GPGT  P HSSSPYNN +N RPDDSAK GGCFPCLRRK
Sbjct: 208 NNPASADGFTHIFGKVREERLGPGT--PQHSSSPYNNANNGRPDDSAKGGGCFPCLRRK 223

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BLAST of Carg11450 vs. NCBI nr
Match: XP_022145992.1 (RPM1-interacting protein 4-like [Momordica charantia])

HSP 1 Score: 263.5 bits (672), Expect = 7.1e-67
Identity = 143/243 (58.85%), Postives = 158/243 (65.02%), Query Frame = 0


Query: 3   ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPK---------PTTHEKKQSR 62
           ARKGRGGGPIRNPNDPEEYP++F+DNSH   P  P++P PK         PT HE+++SR
Sbjct: 30  ARKGRGGGPIRNPNDPEEYPDVFSDNSHSHEP-PPSMPMPKDDPQTLKPTPTAHERRRSR 89

Query: 63  EDD-GYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHTKPSGRESPVVEGKGFDGGHGN 122
           ED     PYANS          QSGSEYSIDRSPLHRH KP+GRESPV EGK  DGGHGN
Sbjct: 90  EDGASRQPYANSXXXXXXXXXXQSGSEYSIDRSPLHRHAKPTGRESPVAEGKSLDGGHGN 149

Query: 123 RGKTRMKPDAVSFLPFLTPCSIIHKSEQNPQINFKSFFLRRCILKWYILVVQPEGTAVPK 182
           RGKTRMKP                                       +    PEGTAVPK
Sbjct: 150 RGKTRMKP--------------------------------------VLRDDAPEGTAVPK 209

Query: 183 FGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNQRPDDSAKGGCFPC 236
           FG WDVNNPASADGFTHIFGKVREE++GPGTPP  HSSSPYNNVHNQ+ D +AKG CFP 
Sbjct: 210 FGXWDVNNPASADGFTHIFGKVREERIGPGTPPVVHSSSPYNNVHNQKTDHNAKGCCFPW 233

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BLAST of Carg11450 vs. NCBI nr
Match: XP_022960209.1 (RPM1-interacting protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 257.3 bits (656), Expect = 5.1e-65
Identity = 142/235 (60.43%), Postives = 159/235 (67.66%), Query Frame = 0


Query: 3   ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHPYA 62
           ARKGRGGGPIRNPNDPEEYPEMFA ++       P  PAP PTTHE++QSRE      Y 
Sbjct: 27  ARKGRGGGPIRNPNDPEEYPEMFAADNTPKKDDSP-APAPIPTTHERRQSRE------YG 86

Query: 63  NSPGHRENPSRKQSGSEYSIDRSPLHRHTKPSGRESPVVEGKGFDGGHGNRGKTRMKPDA 122
           +SP HRENPSRKQSG+EYSIDRSPLHR  KPSGRESP+VE KG DGG+GNRGK+R KP  
Sbjct: 87  SSPAHRENPSRKQSGTEYSIDRSPLHRQAKPSGRESPMVENKGSDGGYGNRGKSRTKP-- 146

Query: 123 VSFLPFLTPCSIIHKSEQNPQINFKSFFLRRCILKWYILVVQPEGTAVPKFGSWDVNNPA 182
                                                   +Q EGTAVPKFGSWDVNNPA
Sbjct: 147 ----------------------------------------LQAEGTAVPKFGSWDVNNPA 206

Query: 183 SADGFTHIFGKVREEKMGPGTPP-PPHSSSPYNNVHNQRPDDSAKG-GCFPCLRR 236
           SADGFTHIFG+VR+EK+GPGTPP  PHSSSPYNN+ N + D+SAKG  CFP L +
Sbjct: 207 SADGFTHIFGEVRKEKLGPGTPPRQPHSSSPYNNLKNPKADNSAKGCCCFPWLSK 212

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BLAST of Carg11450 vs. TAIR10
Match: AT3G25070.1 (RPM1 interacting protein 4)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-12
Identity = 69/245 (28.16%), Postives = 106/245 (43.27%), Query Frame = 0


Query: 3   ARKGRG-GGPIRNPNDPEEYPEMFADNSHEAPP------VKPNIPAPKPTTHEKKQSRED 62
           ARK R  G  I NPND    PE  +D+  +APP       KP        + E  +SRE+
Sbjct: 27  ARKTRAPGSKIMNPND----PEYNSDSQSQAPPHPPSSRTKPEQVDTVRRSREHMRSREE 86

Query: 63  DGYHPYANSPGHRENPSRKQSG-----SEYSIDRSPLHRHTKPSGRESPVVEGKGFDGGH 122
                + ++ G     + K+ G     + Y  ++SPLH+++              +DG  
Sbjct: 87  SELKQFGDAGGSSNEAANKRQGRASQNNSYD-NKSPLHKNS--------------YDG-- 146

Query: 123 GNRGKTRMKPDAVSFLPFLTPCSIIHKSEQNPQINFKSFFLRRCILKWYILVVQPEGTAV 182
              GK+R KP  +             +++++P+                      + T V
Sbjct: 147 --TGKSRPKPTNL-------------RADESPE----------------------KVTVV 206

Query: 183 PKFGSWDVNNPASADGFTHIFGKVREEK-----MGPGTPPPPHSSSPYNNVHNQRPDDSA 231
           PKFG WD NNP+SADG+THIF KVREE+     +   +  P H SS       + P++++
Sbjct: 207 PKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSS-------RNPNNTS 206

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BLAST of Carg11450 vs. TAIR10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-09
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 166 EGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNQRPDDSA 225
           +G  +PKFG WDVN+P+SA+GFT IF K R EK G G    P    P  N + +  +  A
Sbjct: 4   KGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLEKPA 63

Query: 226 KGGCFPCLR 235
           K   F C+R
Sbjct: 64  K-KWFCCIR 71

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BLAST of Carg11450 vs. TAIR10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-09
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 162 VVQPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEK-------MGPGT--PPPPHSSSP 221
           + + +G  +PKFG WDVNNPASA+GFT IF K  +EK        GP +   P  + +S 
Sbjct: 1   MAENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSD 60

Query: 222 YNNVH-NQRPDDSAKGGCF 231
            NN H +Q P    K  CF
Sbjct: 61  QNNNHSSQNPKAKNKWFCF 79

[Close]

BLAST of Carg11450 vs. TAIR10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-09
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 166 EGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSS 212
           +G  +PKFG WDVN+PASA+GFT IF K R+EK   G P  P  SS
Sbjct: 20  KGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSS 65

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BLAST of Carg11450 vs. TAIR10
Match: AT2G17660.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-07
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 167 GTAVPKFGSWDVNNPASADGFTHIFGKVREEK 199
           G A+PKFG WDVN+PA+ADGFT IF K  E+K
Sbjct: 7   GRALPKFGEWDVNDPATADGFTVIFSKAGEDK 38

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BLAST of Carg11450 vs. Swiss-Prot
Match: sp|Q8GYN5|RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-10
Identity = 69/245 (28.16%), Postives = 106/245 (43.27%), Query Frame = 0


Query: 3   ARKGRG-GGPIRNPNDPEEYPEMFADNSHEAPP------VKPNIPAPKPTTHEKKQSRED 62
           ARK R  G  I NPND    PE  +D+  +APP       KP        + E  +SRE+
Sbjct: 27  ARKTRAPGSKIMNPND----PEYNSDSQSQAPPHPPSSRTKPEQVDTVRRSREHMRSREE 86

Query: 63  DGYHPYANSPGHRENPSRKQSG-----SEYSIDRSPLHRHTKPSGRESPVVEGKGFDGGH 122
                + ++ G     + K+ G     + Y  ++SPLH+++              +DG  
Sbjct: 87  SELKQFGDAGGSSNEAANKRQGRASQNNSYD-NKSPLHKNS--------------YDG-- 146

Query: 123 GNRGKTRMKPDAVSFLPFLTPCSIIHKSEQNPQINFKSFFLRRCILKWYILVVQPEGTAV 182
              GK+R KP  +             +++++P+                      + T V
Sbjct: 147 --TGKSRPKPTNL-------------RADESPE----------------------KVTVV 206

Query: 183 PKFGSWDVNNPASADGFTHIFGKVREEK-----MGPGTPPPPHSSSPYNNVHNQRPDDSA 231
           PKFG WD NNP+SADG+THIF KVREE+     +   +  P H SS       + P++++
Sbjct: 207 PKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSS-------RNPNNTS 206

[Close]

BLAST of Carg11450 vs. Swiss-Prot
Match: sp|O22633|NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.6e-08
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 166 EGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSS 212
           +G  +PKFG WDVN+PASA+GFT IF K R+EK   G P  P  SS
Sbjct: 4   KGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSS 49

[Close]

BLAST of Carg11450 vs. TrEMBL
Match: tr|A0A0A0K570|A0A0A0K570_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G343300 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 4.5e-70
Identity = 144/239 (60.25%), Postives = 163/239 (68.20%), Query Frame = 0


Query: 3   ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPN----IPAPKPTTHEKKQSREDDGY 62
           ARKGRGGGPIRNPNDPEEYP++F DNSHEAPP KP+            HE++QSRED G+
Sbjct: 28  ARKGRGGGPIRNPNDPEEYPDIFMDNSHEAPPSKPSPKDXXXXXXXXXHERRQSREDGGF 87

Query: 63  HPYANSPGHRENPSRKQSGSEYSIDRSPLHRHTKPSGRESPVVEGKGFDGGHGNRGKTRM 122
            PYANSPG+REN  R+QSGSEYSIDRSPLHR  KPS R+S + EGK F+G + NRGKT+ 
Sbjct: 88  RPYANSPGNRENQGRRQSGSEYSIDRSPLHRQAKPSARDSSMTEGKSFEGNYDNRGKTKT 147

Query: 123 KPDAVSFLPFLTPCSIIHKSEQNPQINFKSFFLRRCILKWYILVVQPEGTAVPKFGSWDV 182
           K ++                                          PEGTA+PKFGSWDV
Sbjct: 148 KNNS-----------------------------------------PPEGTALPKFGSWDV 207

Query: 183 NNPASADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNQRPDDSAK-GGCFPCLRRK 237
           NNPASADGFTHIFGKVREE++GPGT  P HSSSPYNN +N RPDDSAK GGCFPCLRRK
Sbjct: 208 NNPASADGFTHIFGKVREERLGPGT--PQHSSSPYNNANNGRPDDSAKGGGCFPCLRRK 223

[Close]

BLAST of Carg11450 vs. TrEMBL
Match: tr|A0A1S3C6U9|A0A1S3C6U9_CUCME (RPM1-interacting protein 4 OS=Cucumis melo OX=3656 GN=LOC103497569 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.4e-65
Identity = 135/239 (56.49%), Postives = 154/239 (64.44%), Query Frame = 0


Query: 3   ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI----PAPKPTTHEKKQSREDDGY 62
           ARKGRGGGPIRNPNDPEEYP++  DNSHEAPP KP++    P   PTTHE++ SRED G+
Sbjct: 28  ARKGRGGGPIRNPNDPEEYPDILIDNSHEAPPSKPSLKDDTPXXXPTTHERRHSREDGGF 87

Query: 63  HPYANSPGHRENPSRKQSGSEYSIDRSPLHRHTKPSGRESPVVEGKGFDGGHGNRGKTRM 122
            PYANSPG+RENP R+QSGS+YSIDRSPLHR  KPS R+S + EGK F+G + NRGKT+ 
Sbjct: 88  RPYANSPGNRENPGRRQSGSDYSIDRSPLHRQAKPSARDSSMTEGKSFEGSYDNRGKTKT 147

Query: 123 KPDAVSFLPFLTPCSIIHKSEQNPQINFKSFFLRRCILKWYILVVQPEGTAVPKFGSWDV 182
           K ++                                          PEGTAVPKFGSWDV
Sbjct: 148 KNNS-----------------------------------------PPEGTAVPKFGSWDV 207

Query: 183 NNPASADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNQRPDDSAK-GGCFPCLRRK 237
           NNPASADGFTHIFGKVREE++GPGTPP                 DS K GGCFPCLRRK
Sbjct: 208 NNPASADGFTHIFGKVREERLGPGTPPXXXXXXXXXXXXXXXXXDSVKGGGCFPCLRRK 225

[Close]

BLAST of Carg11450 vs. TrEMBL
Match: tr|M5VNG2|M5VNG2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G199800 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.6e-35
Identity = 103/265 (38.87%), Postives = 136/265 (51.32%), Query Frame = 0


Query: 3   ARKGR--GGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHP 62
           ARKGR   GG + NPNDP++  +M +D S  A         P+   HE+++SRED+    
Sbjct: 28  ARKGRTGPGGKMINPNDPQQNQDMLSDISSSASSPPKVRAEPERPVHERRRSREDNDLRQ 87

Query: 63  YANSPGHREN---------------------------PSRKQSGSEYSIDRSPLHRHTKP 122
           +ANSP HREN                           P+R  SGSEYS++RSPLHR+ + 
Sbjct: 88  FANSPAHRENLGRRTSGEAANQPNRGRGVSSGETHRKPARPSSGSEYSVERSPLHRNARV 147

Query: 123 SGRESPVVEGK-GFDGGHGNRGKTRMKPDAVSFLPFLTPCSIIHKSEQNPQINFKSFFLR 182
           SGR+SP  EGK  ++  HG  G++R+KP                  +++P+         
Sbjct: 148 SGRDSPSWEGKPSYESSHGTPGRSRLKP-----------------RDESPE--------- 207

Query: 183 RCILKWYILVVQPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMG--PGTPPPPHSS 236
                        +G AVPKFG WD N+PASADGFTHIF KVREEK G  PGTP    S 
Sbjct: 208 -------------KGAAVPKFGEWDENDPASADGFTHIFNKVREEKAGKVPGTP----SQ 249

[Close]

BLAST of Carg11450 vs. TrEMBL
Match: tr|A0A2P5CEA4|A0A2P5CEA4_9ROSA (RIN4, pathogenic type III effector avirulence factor Avr cleavage site OS=Trema orientalis OX=63057 GN=TorRG33x02_288730 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.0e-34
Identity = 102/271 (37.64%), Postives = 130/271 (47.97%), Query Frame = 0


Query: 3   ARKGRGGGPIRNPNDPEEYPEMFAD--NSHEAPPVKPNIPAPKP--------TTHEKKQS 62
           ARKGR G  I NPNDPEE P++ +D  +S E    K      KP        + HE+++S
Sbjct: 28  ARKGRTGAKIINPNDPEENPDVLSDYSSSAETSLTKEKADGGKPVVQHGGVRSAHERQRS 87

Query: 63  REDDGYHPYANSPGHREN----------------------------PSRKQSGSEYSIDR 122
           +ED+    Y+NSP H  N                            P+R+ +GSE SI+R
Sbjct: 88  KEDNDLRQYSNSPAHNNNVGRRVSNDLNQRLGGAGRGASPGDNHRRPARQSAGSEQSIER 147

Query: 123 SPLHRHTKPSGRESPVVEGKGFDGGHGNRGKTRMKPDAVSFLPFLTPCSIIHKSEQNPQI 182
           SPLHR  K +GR+SP  EGK ++G HG  G++R++P                + ++ P  
Sbjct: 148 SPLHRQAKATGRDSPSWEGKSYEGSHGTPGRSRLRP----------------RGDETPD- 207

Query: 183 NFKSFFLRRCILKWYILVVQPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKM-GPGT 235
                                 G AVPKFG WD  NPASADGFTHIF KVREE+  G G 
Sbjct: 208 ---------------------HGAAVPKFGEWDETNPASADGFTHIFNKVREERQTGAGR 258

[Close]

BLAST of Carg11450 vs. TrEMBL
Match: tr|A0A2P5AHM0|A0A2P5AHM0_PARAD (RIN4, pathogenic type III effector avirulence factor Avr cleavage site OS=Parasponia andersonii OX=3476 GN=PanWU01x14_331370 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.6e-33
Identity = 100/271 (36.90%), Postives = 129/271 (47.60%), Query Frame = 0


Query: 3   ARKGRGGGPIRNPNDPEEYPEMFAD--NSHEAPPVKPNIPAPKP--------TTHEKKQS 62
           ARKGR G  I NPNDPEE P++ +D  +S E    K      KP        + HE+++S
Sbjct: 28  ARKGRTGAKITNPNDPEENPDVLSDYSSSAETSLTKEKADGGKPVGQPGGVRSAHERQRS 87

Query: 63  REDDGYHPYANSPGHREN----------------------------PSRKQSGSEYSIDR 122
           +ED+    Y+NSP +  N                            P+R+ +GSE SI+R
Sbjct: 88  KEDNDLRQYSNSPAYHNNVGRRVSNDLNQRLGGAGRGAIPVDNHRRPARQSAGSEQSIER 147

Query: 123 SPLHRHTKPSGRESPVVEGKGFDGGHGNRGKTRMKPDAVSFLPFLTPCSIIHKSEQNPQI 182
           SPLHR  K +GR+SP  EGK ++G HG  G++R++P                + ++ P  
Sbjct: 148 SPLHRQAKATGRDSPTWEGKSYEGSHGTPGRSRLRP----------------RGDETPD- 207

Query: 183 NFKSFFLRRCILKWYILVVQPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKM-GPGT 235
                                 G AVPKFG WD  NPASADGFTHIF KVREE+  G G 
Sbjct: 208 ---------------------HGAAVPKFGEWDETNPASADGFTHIFNKVREERQTGAGR 258

The following BLAST results are available for this feature:

BLAST of Carg11450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953250.1	4.5e-98	78.21	RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022991999.1 RPM1-intera...	[more]
XP_023547760.1	6.6e-97	77.35	RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_004139625.2	6.8e-70	60.25	PREDICTED: RPM1-interacting protein 4 [Cucumis sativus] >KGN44613.1 hypothetical...	[more]
XP_022145992.1	7.1e-67	58.85	RPM1-interacting protein 4-like [Momordica charantia]	[more]
XP_022960209.1	5.1e-65	60.43	RPM1-interacting protein 4-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg11450 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25070.1	7.9e-12	28.16	RPM1 interacting protein 4	[more]
AT2G04410.1	1.7e-09	44.93	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	3.7e-09	43.04	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	3.7e-09	58.70	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G17660.1	2.0e-07	68.75	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of Carg11450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GYN5\|RIN4_ARATH	1.4e-10	28.16	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]
sp\|O22633\|NOI4_ARATH	6.6e-08	58.70	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]

BLAST of Carg11450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K570\|A0A0A0K570_CUCSA	4.5e-70	60.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G343300 PE=4 SV=1	[more]
tr\|A0A1S3C6U9\|A0A1S3C6U9_CUCME	4.4e-65	56.49	RPM1-interacting protein 4 OS=Cucumis melo OX=3656 GN=LOC103497569 PE=4 SV=1	[more]
tr\|M5VNG2\|M5VNG2_PRUPE	3.6e-35	38.87	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G199800 PE=4 SV=1	[more]
tr\|A0A2P5CEA4\|A0A2P5CEA4_9ROSA	4.0e-34	37.64	RIN4, pathogenic type III effector avirulence factor Avr cleavage site OS=Trema ...	[more]
tr\|A0A2P5AHM0\|A0A2P5AHM0_PARAD	2.6e-33	36.90	RIN4, pathogenic type III effector avirulence factor Avr cleavage site OS=Parasp...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11450-RA	Carg11450-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 166..198 e-value: 1.0E-19 score: 69.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..236
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 166..232
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 3..75
None	No IPR available	PANTHER	PTHR33159:SF6	RPM1-INTERACTING PROTEIN 4	coord: 3..75
None	No IPR available	PANTHER	PTHR33159:SF6	RPM1-INTERACTING PROTEIN 4	coord: 166..232

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11450	Cla014936	Watermelon (97103) v1	carwmB0014
Carg11450	Csa7G343300	Cucumber (Chinese Long) v2	carcuB0013
Carg11450	MELO3C021057	Melon (DHL92) v3.5.1	carmeB0011
Carg11450	ClCG09G008810	Watermelon (Charleston Gray)	carwcgB0012
Carg11450	CSPI07G14420	Wild cucumber (PI 183967)	carcpiB0013
Carg11450	Cucsa.078160	Cucumber (Gy14) v1	carcgyB0011
Carg11450	CmaCh08G002250	Cucurbita maxima (Rimu)	carcmaB0021
Carg11450	CmaCh17G012710	Cucurbita maxima (Rimu)	carcmaB0020
Carg11450	CmoCh08G002240	Cucurbita moschata (Rifu)	carcmoB0022
Carg11450	CmoCh17G012410	Cucurbita moschata (Rifu)	carcmoB0021
Carg11450	Lsi02G021000	Bottle gourd (USVL1VR-Ls)	carlsiB012
Carg11450	Cp4.1LG12g11050	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11450	Cp4.1LG17g11110	Cucurbita pepo (Zucchini)	carcpeB0020
Carg11450	CsGy7G012990	Cucumber (Gy14) v2	carcgybB0012
Carg11450	MELO3C021057.2	Melon (DHL92) v3.6.1	carmedB0012
Carg11450	CsaV3_7G026140	Cucumber (Chinese Long) v3	carcucB0013
Carg11450	Cla97C09G171610	Watermelon (97103) v2	carwmbB0012
Carg11450	Bhi09G001111	Wax gourd	carwgoB0015

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11450	Carg05048	Silver-seed gourd	carcarB009

The following block(s) are covering this gene:

None