Cp4.1LG17g11110.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g11110.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RPM1 interacting protein 4 transcript protein
Location	Cp4.1LG17 : 8424279 .. 8425639 (+)
Sequence length	618

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGAGCTATTCTATTTCTTCTTCTTGTTCTTGATTTTGCCGTTTCTGTTTGTTTGGTTGCTGAGAAAAAGAAAAAGAAAAAGAAAATTAGAAAGTATCTGTGATTTGATATTGTGGGTATTAACTTAAATCTGGAAATTATGGGCGATGCAATGGAGTTTCTCTGTTCTTTCTCTGTTCTTCGATCTCACCTGTTGACTTTTATGAAACTTTCTTGATGATTCATTCAAATTTGTATAGTTTTGATTTGTAAAATGTGTTTTGTTGGAACAGCAGCGGTCACATGTTCCAGCTTTTGGGAACTGGGAAAGTGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCCATCAGAAACCCCAACGATCCTGAGGAATATCCAGAAATGTTCGCCGCCGAAAACACACCCAAAAAGGACGATTCTCCAGCTCCGGCGCCGATACCCATGACCCACGAGAGGAGGCAGAGCCGTGAATACGGCAGCTCCCCTGCCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGAACAGAGTATAGCATCGACCGCTCGCCTCTCCACCGCCAGGCAAAGCCGTCGGGAAGAGAGAGCCCAATGGTGGAGAACAAGGGGTCCGATGGTGGCTATGGAAATCGCGGGAAATCTAGAACGAAGCCGCTTCAGGCGGAAGGGACGGCGGTGCCGAAATTTGGGTCGTGGGATGTGAACAATCCGGCGTCGGCGGACGGTTTTACTCACATATTTGGTGAAGTTCGGAAGGAGAAGTTGGGGCCGGGAACGCCGCCGCGGCAGCCGCATTCTTCTTCGCCGTACAACAATCTTAATAACCCAAAAGCCGACAACAGCGCCAAGGTATTTAATTAACCTTTTTTTTTTTTTTTTTTTAAATTATAAAAATAAAGTAAAAAAAAAAATTGAAAATTAAAATATTTTCCCCCCTAATTTTTGGTGGCAGGGATGTTGCTGCTTTCCATGGCTAAGTAAATAAGTTTGAACTGTGTGGGCTTTTACTGTGCGGACTGGGCTCTGTTTATGAACTATATGGGCTTTTACTGTGGGCTCTGTTTATCGACTGTGTGGGCTTTCACTGTGCAGACTGGGCTCTGTTTATGAACTATGTGGGCTTTTACTTTGGGCTCTGTTTATAGACTGTGTGGGCTTTTACTGTGCAGACTGGGCTCTGTTTATGAACTATGGGCTTTTACTGTGGGCTCTGTTTATAGACTGTGTGGGCTTTTACTGTGCAGACTGGGCTCTGTTTATGAACTGTGTGGGCTTTTTTGTATTTATTTTTATATATAAATTTCCTTAATTCTTTTGTAGCTCATGTAA

mRNA sequence

ATGGCGCAGCGGTCACATGTTCCAGCTTTTGGGAACTGGGAAAGTGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCCATCAGAAACCCCAACGATCCTGAGGAATATCCAGAAATGTTCGCCGCCGAAAACACACCCAAAAAGGACGATTCTCCAGCTCCGGCGCCGATACCCATGACCCACGAGAGGAGGCAGAGCCGTGAATACGGCAGCTCCCCTGCCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGAACAGAGTATAGCATCGACCGCTCGCCTCTCCACCGCCAGGCAAAGCCGTCGGGAAGAGAGAGCCCAATGGTGGAGAACAAGGGGTCCGATGGTGGCTATGGAAATCGCGGGAAATCTAGAACGAAGCCGCTTCAGGCGGAAGGGACGGCGGTGCCGAAATTTGGGTCGTGGGATGTGAACAATCCGGCGTCGGCGGACGGTTTTACTCACATATTTGGTGAAGTTCGGAAGGAGAAGTTGGGGCCGGGAACGCCGCCGCGGCAGCCGCATTCTTCTTCGCCGTACAACAATCTTAATAACCCAAAAGCCGACAACAGCGCCAAGCTCATGTAA

Coding sequence (CDS)

ATGGCGCAGCGGTCACATGTTCCAGCTTTTGGGAACTGGGAAAGTGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCCATCAGAAACCCCAACGATCCTGAGGAATATCCAGAAATGTTCGCCGCCGAAAACACACCCAAAAAGGACGATTCTCCAGCTCCGGCGCCGATACCCATGACCCACGAGAGGAGGCAGAGCCGTGAATACGGCAGCTCCCCTGCCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGAACAGAGTATAGCATCGACCGCTCGCCTCTCCACCGCCAGGCAAAGCCGTCGGGAAGAGAGAGCCCAATGGTGGAGAACAAGGGGTCCGATGGTGGCTATGGAAATCGCGGGAAATCTAGAACGAAGCCGCTTCAGGCGGAAGGGACGGCGGTGCCGAAATTTGGGTCGTGGGATGTGAACAATCCGGCGTCGGCGGACGGTTTTACTCACATATTTGGTGAAGTTCGGAAGGAGAAGTTGGGGCCGGGAACGCCGCCGCGGCAGCCGCATTCTTCTTCGCCGTACAACAATCTTAATAACCCAAAAGCCGACAACAGCGCCAAGCTCATGTAA

Protein sequence

MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFAAENTPKKDDSPAPAPIPMTHERRQSREYGSSPAHRENPSRKQSGTEYSIDRSPLHRQAKPSGRESPMVENKGSDGGYGNRGKSRTKPLQAEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSSSPYNNLNNPKADNSAKLM

Homology

[Close]

BLAST of Cp4.1LG17g11110.1 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-23
Identity = 83/208 (39.90%), Postives = 102/208 (49.04%), Query Frame = 1


Query: 4   RSHVPAFGNWESEGNVPYTVFFDKARKGRG-GGPIRNPNDPEEYPEMFAAENTPKKDDSP 63
           RS+VP FGNWE+E NVPYT +FDKARK R  G  I NPNDPE         N+  +  +P
Sbjct: 3   RSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEY--------NSDSQSQAP 62

Query: 64  APAPIPMTHER-----RQSREYGSSPAHRENPSRKQSGTEY-SIDRSPLHRQAKPSGRES 123
              P   T        R+SRE+  S   RE    KQ G    S + +   RQ + S   S
Sbjct: 63  PHPPSSRTKPEQVDTVRRSREHMRS---REESELKQFGDAGGSSNEAANKRQGRASQNNS 122

Query: 124 PMVENKGSDGGYGNRGKSRTKPLQAEG-------TAVPKFGSWDVNNPASADGFTHIFGE 183
              ++      Y   GKSR KP            T VPKFG WD NNP+SADG+THIF +
Sbjct: 123 YDNKSPLHKNSYDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNK 182

Query: 184 VRKEK------LGPGTPPRQPHSSSPYN 192
           VR+E+       G    P    S +P N
Sbjct: 183 VREERSSGANVSGSSRTPTHQSSRNPNN 199

[Close]

BLAST of Cp4.1LG17g11110.1 vs. Swiss-Prot
Match: NOIL_ELAOL (NOI-like protein OS=Elaeis oleifera PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06
Identity = 35/94 (37.23%), Postives = 48/94 (51.06%), Query Frame = 1


Query: 1  MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRG-GGPIRNPNDPEEYPEMFAAENTPKKD 60
          MAQ +HVP FGNW+ E N+ YT +F+   + +G G  I NPNDPEE P+ F    T  +D
Sbjct: 1  MAQPAHVPKFGNWDGE-NISYTTYFETVHRDKGDGSKIFNPNDPEENPQAF-YPRTVAQD 60

Query: 61 DSPAPAPIPMTHERRQSREYGSSPAHRENPSRKQ 94
             +       H    S +Y     HR    R++
Sbjct: 61 HQHSE-----KHHNDTSTDYHVVKQHRRKHHRRE 87

[Close]

BLAST of Cp4.1LG17g11110.1 vs. TrEMBL
Match: A0A0A0K570_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G343300 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74
Identity = 151/215 (70.23%), Postives = 168/215 (78.14%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFA--AENTPKK 60
           MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYP++F   +   P  
Sbjct: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPDIFMDNSHEAPPS 60

Query: 61  DDSP---APAPIPMTHERRQSRE------YGSSPAHRENPSRKQSGTEYSIDRSPLHRQA 120
             SP    P P P THERRQSRE      Y +SP +REN  R+QSG+EYSIDRSPLHRQA
Sbjct: 61  KPSPKDDTPPPKPTTHERRQSREDGGFRPYANSPGNRENQGRRQSGSEYSIDRSPLHRQA 120

Query: 121 KPSGRESPMVENKGSDGGYGNRGKSRTK-PLQAEGTAVPKFGSWDVNNPASADGFTHIFG 180
           KPS R+S M E K  +G Y NRGK++TK     EGTA+PKFGSWDVNNPASADGFTHIFG
Sbjct: 121 KPSARDSSMTEGKSFEGNYDNRGKTKTKNNSPPEGTALPKFGSWDVNNPASADGFTHIFG 180

Query: 181 EVRKEKLGPGTPPRQPHSSSPYNNLNNPKADNSAK 204
           +VR+E+LGPGTP    HSSSPYNN NN + D+SAK
Sbjct: 181 KVREERLGPGTP---QHSSSPYNNANNGRPDDSAK 212

[Close]

BLAST of Cp4.1LG17g11110.1 vs. TrEMBL
Match: M5VNG2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010450mg PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 115/248 (46.37%), Postives = 147/248 (59.27%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGR--GGGPIRNPNDPEEYPEMF----AAEN 60
           M QRSHVP FGNWE E NVPYT +FDKARKGR   GG + NPNDP++  +M     ++ +
Sbjct: 1   MTQRSHVPKFGNWEGEENVPYTAYFDKARKGRTGPGGKMINPNDPQQNQDMLSDISSSAS 60

Query: 61  TPKKDDSPAPAPIPMTHERRQSRE------YGSSPAHREN-------------------- 120
           +P K  +    P+   HERR+SRE      + +SPAHREN                    
Sbjct: 61  SPPKVRAEPERPV---HERRRSREDNDLRQFANSPAHRENLGRRTSGEAANQPNRGRGVS 120

Query: 121 -------PSRKQSGTEYSIDRSPLHRQAKPSGRESPMVENKGS-DGGYGNRGKSRTKPLQ 180
                  P+R  SG+EYS++RSPLHR A+ SGR+SP  E K S +  +G  G+SR KP  
Sbjct: 121 SGETHRKPARPSSGSEYSVERSPLHRNARVSGRDSPSWEGKPSYESSHGTPGRSRLKPRD 180

Query: 181 ---AEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLG--PGTPPRQPHSSSPYNNLNN 204
               +G AVPKFG WD N+PASADGFTHIF +VR+EK G  PGTP     S S Y++   
Sbjct: 181 ESPEKGAAVPKFGEWDENDPASADGFTHIFNKVREEKAGKVPGTP-----SQSSYHDARK 240

[Close]

BLAST of Cp4.1LG17g11110.1 vs. TrEMBL
Match: A0A061DV43_THECC (RPM1 interacting protein 4, putative OS=Theobroma cacao GN=TCM_002874 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.0e-40
Identity = 111/254 (43.70%), Postives = 134/254 (52.76%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMF---------- 60
           MAQ SHVP FGNWESE NVPYT +FDKARKGR GG I NPNDP+E P++           
Sbjct: 1   MAQHSHVPKFGNWESEENVPYTAYFDKARKGRTGGKIVNPNDPQESPDLHYDYVAPTRAS 60

Query: 61  -AAENTPKKDDSPAPAPIPMTHERRQSRE------YGSSPAHREN--------------- 120
            A+   P+ D+     P    HER +SRE      Y  SP+H +N               
Sbjct: 61  PASRAKPELDEPVGHGPTRRAHERGRSREEGELKQYADSPSHHDNVNRRASGDSTPSRYG 120

Query: 121 -----------PSRKQSGTEYSIDRSPLHRQAK--PSGRESPMVENKGS-DGGYGNRGKS 180
                      P+R   G+E SIDRSPLH QA+       SP  E K S D  +G  G+S
Sbjct: 121 RGVNVGEAPKRPARSSIGSENSIDRSPLHHQARVGRGSMASPAWEGKNSYDSSHGTPGRS 180

Query: 181 RTKPLQA------EGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSSS 203
           R +P         +G AVPKFG WD NNPASADG+THIF +VR+E+   G  P  P   S
Sbjct: 181 RMRPSTRGDESPDKGAAVPKFGDWDENNPASADGYTHIFNKVREERNNGGRVPGMPGEQS 240

[Close]

BLAST of Cp4.1LG17g11110.1 vs. TrEMBL
Match: V7AKN6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G021200g PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39
Identity = 106/221 (47.96%), Postives = 128/221 (57.92%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFAAENTPKKDD 60
           MAQRSHVP FGNW+S  NVPYT +FDKARKGR G  I NPNDPEE  ++    + P  + 
Sbjct: 1   MAQRSHVPKFGNWDSGDNVPYTAYFDKARKGRTGAKIINPNDPEENSDL--GLDNPSSEH 60

Query: 61  SPAPAP------------------------IPMTHE----RRQSREYGSSPA-HRENPSR 120
            P P P                         P  H+    R  SR +G  PA +R  PS 
Sbjct: 61  LPPPKPRVSSEDPSGKGSLHLEDDPKPFIDSPARHDNASNRSGSRSHGVPPADNRRRPSM 120

Query: 121 KQSGTEYSIDRSPLHRQAKPSGRESPMVENKGS-DGGYGNRGKSRTKPLQA------EGT 180
           + +G+E+SIDRSPLHRQA+P GR+SP+ E K S D   G  G+SR +          +G 
Sbjct: 121 QSAGSEHSIDRSPLHRQARPPGRDSPLWEPKNSYDNIQGTPGRSRLRQANRGDETPDKGA 180

[Close]

BLAST of Cp4.1LG17g11110.1 vs. TrEMBL
Match: C6TH04_SOYBN (RINb protein OS=Glycine max GN=RIN4b PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-39
Identity = 110/236 (46.61%), Postives = 134/236 (56.78%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFAAENTPKKDD 60
           MAQRSHVP FGNW+S  NVPYT +FDKARKGR G  I NPNDPEE  ++  + + P  D+
Sbjct: 1   MAQRSHVPKFGNWDSGENVPYTAYFDKARKGRTGTRIINPNDPEENADL--SFDNPSSDN 60

Query: 61  SPAPAP------------------------IPMTHE----RRQSREYG-SSPAHRENPSR 120
            P   P                         P  H+    R  SR +G  S  +R   S 
Sbjct: 61  LPPTRPRTNSEDQSGKGSLHLEDDPKNFIESPARHDNVSSRSGSRSHGVGSADNRRRHST 120

Query: 121 KQSGTEYSIDRSPLHRQAKPSGRESPMVENKGS-DGGYGNRGKSRTKPLQA------EGT 180
           + +G+EYSI+RSPLHRQA+  GR+SP  E K S D   G  G+SR +P         +G 
Sbjct: 121 QSTGSEYSIERSPLHRQARAPGRDSPQWEPKNSYDSSQGTPGRSRLRPANRGDETPDKGA 180

Query: 181 AVPKFGSWDVNNPASADGFTHIFGEVRKEKLG-----PGTPPRQPHSSSPYNNLNN 196
           AVPKFG WDVNNPASADGFTHIF +VR+E+ G     PGTP  +P    P N L+N
Sbjct: 181 AVPKFGDWDVNNPASADGFTHIFNKVREERQGGPGQVPGTPNERP---QPINGLSN 231

[Close]

BLAST of Cp4.1LG17g11110.1 vs. TAIR10
Match: AT3G25070.1 (AT3G25070.1 RPM1 interacting protein 4)

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-24
Identity = 83/208 (39.90%), Postives = 102/208 (49.04%), Query Frame = 1


Query: 4   RSHVPAFGNWESEGNVPYTVFFDKARKGRG-GGPIRNPNDPEEYPEMFAAENTPKKDDSP 63
           RS+VP FGNWE+E NVPYT +FDKARK R  G  I NPNDPE         N+  +  +P
Sbjct: 3   RSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEY--------NSDSQSQAP 62

Query: 64  APAPIPMTHER-----RQSREYGSSPAHRENPSRKQSGTEY-SIDRSPLHRQAKPSGRES 123
              P   T        R+SRE+  S   RE    KQ G    S + +   RQ + S   S
Sbjct: 63  PHPPSSRTKPEQVDTVRRSREHMRS---REESELKQFGDAGGSSNEAANKRQGRASQNNS 122

Query: 124 PMVENKGSDGGYGNRGKSRTKPLQAEG-------TAVPKFGSWDVNNPASADGFTHIFGE 183
              ++      Y   GKSR KP            T VPKFG WD NNP+SADG+THIF +
Sbjct: 123 YDNKSPLHKNSYDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNK 182

Query: 184 VRKEK------LGPGTPPRQPHSSSPYN 192
           VR+E+       G    P    S +P N
Sbjct: 183 VREERSSGANVSGSSRTPTHQSSRNPNN 199

[Close]

BLAST of Cp4.1LG17g11110.1 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-07
Identity = 28/62 (45.16%), Postives = 35/62 (56.45%), Query Frame = 1


Query: 142 EGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSSSPYNNLNNPKADNS 201
           +G  +PKFG WDVN+P+SA+GFT IF + R EK G G     P    P  N N    +  
Sbjct: 4   KGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSD-SPGKDEPGYNKNGEVLEKP 63

Query: 202 AK 204
           AK
Sbjct: 64  AK 64

[Close]

BLAST of Cp4.1LG17g11110.1 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-07
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1


Query: 142 EGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSS 188
           +G  +PKFG WDVN+PASA+GFT IF + R EK   G P     SS
Sbjct: 20  KGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSS 65

[Close]

BLAST of Cp4.1LG17g11110.1 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-07
Identity = 32/70 (45.71%), Postives = 40/70 (57.14%), Query Frame = 1


Query: 142 EGTAVPKFGSWDVNNPASADGFTHIFGEVRKEK-------LGPGT--PPRQPHSSSPYNN 201
           +G  +PKFG WDVNNPASA+GFT IF +   EK        GP +   P++  +S   NN
Sbjct: 5   KGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQNNN 64

[Close]

BLAST of Cp4.1LG17g11110.1 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-06
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 1


Query: 134 SRTKPLQAEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEK 175
           S  +  Q +   +PKFG WDVN+PASA+GFT IF + R +K
Sbjct: 3   SNNQQRQQQDRPLPKFGEWDVNDPASAEGFTVIFAKARDDK 43

[Close]

BLAST of Cp4.1LG17g11110.1 vs. NCBI nr
Match: gi|659116341|ref|XP_008458026.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 5.4e-75
Identity = 153/217 (70.51%), Postives = 171/217 (78.80%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMF------AAEN 60
           MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYP++       A  +
Sbjct: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPDILIDNSHEAPPS 60

Query: 61  TPK-KDDSPAPAPIPMTHERRQSRE------YGSSPAHRENPSRKQSGTEYSIDRSPLHR 120
            P  KDD+P P   P THERR SRE      Y +SP +RENP R+QSG++YSIDRSPLHR
Sbjct: 61  KPSLKDDTPPPK--PTTHERRHSREDGGFRPYANSPGNRENPGRRQSGSDYSIDRSPLHR 120

Query: 121 QAKPSGRESPMVENKGSDGGYGNRGKSRTK-PLQAEGTAVPKFGSWDVNNPASADGFTHI 180
           QAKPS R+S M E K  +G Y NRGK++TK     EGTAVPKFGSWDVNNPASADGFTHI
Sbjct: 121 QAKPSARDSSMTEGKSFEGSYDNRGKTKTKNNSPPEGTAVPKFGSWDVNNPASADGFTHI 180

Query: 181 FGEVRKEKLGPGTPPRQPHSSSPYNNLNNPKADNSAK 204
           FG+VR+E+LGPGTPP Q HSSSPYNN NN + D+S K
Sbjct: 181 FGKVREERLGPGTPPPQ-HSSSPYNNANNRRPDDSVK 214

[Close]

BLAST of Cp4.1LG17g11110.1 vs. NCBI nr
Match: gi|778726982|ref|XP_004139625.2| (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 2.0e-74
Identity = 151/215 (70.23%), Postives = 168/215 (78.14%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFA--AENTPKK 60
           MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYP++F   +   P  
Sbjct: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPDIFMDNSHEAPPS 60

Query: 61  DDSP---APAPIPMTHERRQSRE------YGSSPAHRENPSRKQSGTEYSIDRSPLHRQA 120
             SP    P P P THERRQSRE      Y +SP +REN  R+QSG+EYSIDRSPLHRQA
Sbjct: 61  KPSPKDDTPPPKPTTHERRQSREDGGFRPYANSPGNRENQGRRQSGSEYSIDRSPLHRQA 120

Query: 121 KPSGRESPMVENKGSDGGYGNRGKSRTK-PLQAEGTAVPKFGSWDVNNPASADGFTHIFG 180
           KPS R+S M E K  +G Y NRGK++TK     EGTA+PKFGSWDVNNPASADGFTHIFG
Sbjct: 121 KPSARDSSMTEGKSFEGNYDNRGKTKTKNNSPPEGTALPKFGSWDVNNPASADGFTHIFG 180

Query: 181 EVRKEKLGPGTPPRQPHSSSPYNNLNNPKADNSAK 204
           +VR+E+LGPGTP    HSSSPYNN NN + D+SAK
Sbjct: 181 KVREERLGPGTP---QHSSSPYNNANNGRPDDSAK 212

[Close]

BLAST of Cp4.1LG17g11110.1 vs. NCBI nr
Match: gi|595797017|ref|XP_007201227.1| (hypothetical protein PRUPE_ppa010450mg [Prunus persica])

HSP 1 Score: 181.4 bits (459), Expect = 1.6e-42
Identity = 115/248 (46.37%), Postives = 147/248 (59.27%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGR--GGGPIRNPNDPEEYPEMF----AAEN 60
           M QRSHVP FGNWE E NVPYT +FDKARKGR   GG + NPNDP++  +M     ++ +
Sbjct: 1   MTQRSHVPKFGNWEGEENVPYTAYFDKARKGRTGPGGKMINPNDPQQNQDMLSDISSSAS 60

Query: 61  TPKKDDSPAPAPIPMTHERRQSRE------YGSSPAHREN-------------------- 120
           +P K  +    P+   HERR+SRE      + +SPAHREN                    
Sbjct: 61  SPPKVRAEPERPV---HERRRSREDNDLRQFANSPAHRENLGRRTSGEAANQPNRGRGVS 120

Query: 121 -------PSRKQSGTEYSIDRSPLHRQAKPSGRESPMVENKGS-DGGYGNRGKSRTKPLQ 180
                  P+R  SG+EYS++RSPLHR A+ SGR+SP  E K S +  +G  G+SR KP  
Sbjct: 121 SGETHRKPARPSSGSEYSVERSPLHRNARVSGRDSPSWEGKPSYESSHGTPGRSRLKPRD 180

Query: 181 ---AEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLG--PGTPPRQPHSSSPYNNLNN 204
               +G AVPKFG WD N+PASADGFTHIF +VR+EK G  PGTP     S S Y++   
Sbjct: 181 ESPEKGAAVPKFGEWDENDPASADGFTHIFNKVREEKAGKVPGTP-----SQSSYHDARK 240

[Close]

BLAST of Cp4.1LG17g11110.1 vs. NCBI nr
Match: gi|645259630|ref|XP_008235453.1| (PREDICTED: RPM1-interacting protein 4-like [Prunus mume])

HSP 1 Score: 179.9 bits (455), Expect = 4.6e-42
Identity = 115/248 (46.37%), Postives = 146/248 (58.87%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGR--GGGPIRNPNDPEEYPEMF----AAEN 60
           MAQRSHVP FGNWE E NVPYT +FDKARKGR   GG + NPNDP++  +M     ++ +
Sbjct: 1   MAQRSHVPKFGNWEGEENVPYTAYFDKARKGRTGPGGKMINPNDPQQNQDMLSDISSSAS 60

Query: 61  TPKKDDSPAPAPIPMTHERRQSRE------YGSSPAHREN-------------------- 120
           +P K  +    P+    ERR+SRE      + +SPAHREN                    
Sbjct: 61  SPPKFRAEPERPV---DERRRSREDNDLRQFANSPAHRENLGRRTSGEAANQPNRGRGVS 120

Query: 121 -------PSRKQSGTEYSIDRSPLHRQAKPSGRESPMVENKGS-DGGYGNRGKSRTKPLQ 180
                  P+R  SG+EYS++RSPLHR A+ SGR+SP  E K S +  +G  G+SR KP  
Sbjct: 121 SGETHRKPARPSSGSEYSVERSPLHRNARVSGRDSPSWEGKASYESSHGTPGRSRLKPRD 180

Query: 181 ---AEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLG--PGTPPRQPHSSSPYNNLNN 204
               +G AVPKFG WD N+PASADGFTHIF +VR+EK G  PGTP     S S Y +   
Sbjct: 181 ESPEKGAAVPKFGEWDENDPASADGFTHIFNKVREEKAGKAPGTP-----SQSSYQDARK 240

[Close]

BLAST of Cp4.1LG17g11110.1 vs. NCBI nr
Match: gi|590713743|ref|XP_007049721.1| (RPM1 interacting protein 4, putative [Theobroma cacao])

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 111/254 (43.70%), Postives = 134/254 (52.76%), Query Frame = 1


Query: 1   MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMF---------- 60
           MAQ SHVP FGNWESE NVPYT +FDKARKGR GG I NPNDP+E P++           
Sbjct: 1   MAQHSHVPKFGNWESEENVPYTAYFDKARKGRTGGKIVNPNDPQESPDLHYDYVAPTRAS 60

Query: 61  -AAENTPKKDDSPAPAPIPMTHERRQSRE------YGSSPAHREN--------------- 120
            A+   P+ D+     P    HER +SRE      Y  SP+H +N               
Sbjct: 61  PASRAKPELDEPVGHGPTRRAHERGRSREEGELKQYADSPSHHDNVNRRASGDSTPSRYG 120

Query: 121 -----------PSRKQSGTEYSIDRSPLHRQAK--PSGRESPMVENKGS-DGGYGNRGKS 180
                      P+R   G+E SIDRSPLH QA+       SP  E K S D  +G  G+S
Sbjct: 121 RGVNVGEAPKRPARSSIGSENSIDRSPLHHQARVGRGSMASPAWEGKNSYDSSHGTPGRS 180

Query: 181 RTKPLQA------EGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSSS 203
           R +P         +G AVPKFG WD NNPASADG+THIF +VR+E+   G  P  P   S
Sbjct: 181 RMRPSTRGDESPDKGAAVPKFGDWDENNPASADGYTHIFNKVREERNNGGRVPGMPGEQS 240

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g11110.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIN4_ARATH	4.8e-23	39.90	RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1	[more]
NOIL_ELAOL	1.8e-06	37.23	NOI-like protein OS=Elaeis oleifera PE=2 SV=1	[more]

BLAST of Cp4.1LG17g11110.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K570_CUCSA	1.4e-74	70.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G343300 PE=4 SV=1	[more]
M5VNG2_PRUPE	1.1e-42	46.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010450mg PE=4 SV=1	[more]
A0A061DV43_THECC	1.0e-40	43.70	RPM1 interacting protein 4, putative OS=Theobroma cacao GN=TCM_002874 PE=4 SV=1	[more]
V7AKN6_PHAVU	1.1e-39	47.96	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G021200g PE=4 SV=1	[more]
C6TH04_SOYBN	1.5e-39	46.61	RINb protein OS=Glycine max GN=RIN4b PE=2 SV=1	[more]

BLAST of Cp4.1LG17g11110.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25070.1	2.7e-24	39.90	RPM1 interacting protein 4	[more]
AT2G04410.1	3.0e-07	45.16	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	3.9e-07	54.35	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	3.9e-07	45.71	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	2.5e-06	51.22	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of Cp4.1LG17g11110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116341\|ref\|XP_008458026.1\|	5.4e-75	70.51	PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]	[more]
gi\|778726982\|ref\|XP_004139625.2\|	2.0e-74	70.23	PREDICTED: RPM1-interacting protein 4 [Cucumis sativus]	[more]
gi\|595797017\|ref\|XP_007201227.1\|	1.6e-42	46.37	hypothetical protein PRUPE_ppa010450mg [Prunus persica]	[more]
gi\|645259630\|ref\|XP_008235453.1\|	4.6e-42	46.37	PREDICTED: RPM1-interacting protein 4-like [Prunus mume]	[more]
gi\|590713743\|ref\|XP_007049721.1\|	1.5e-40	43.70	RPM1 interacting protein 4, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0045087	innate immune response
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG17g11110	Cp4.1LG17g11110	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g11110.1:cds:001	Cp4.1LG17g11110.1:cds:001	CDS
Cp4.1LG17g11110.1:cds:002	Cp4.1LG17g11110.1:cds:002	CDS
Cp4.1LG17g11110.1:cds:003	Cp4.1LG17g11110.1:cds:003	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g11110.1	Cp4.1LG17g11110.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 141..174 score: 3.3
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 1..174 score: 1.6
None	No IPR available	PANTHER	PTHR33159:SF6	RPM1-INTERACTING PROTEIN 4	coord: 1..174 score: 1.6