Cp4.1LG17g07750 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g07750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionYcf48-like protein
LocationCp4.1LG17 : 5675665 .. 5681849 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCATCTTGCAGTTTGAGACGCTTCAAAATCACCCGCGAACGGGCTGAGAGAACTTCCTTCTGGATAATGTGAGAGATAAGAGGTCGACCAGCACTGCCCTGCTCCTTTCCTTCTCTCTTCAATGGCGACTCTGCAACAACTCCTTAGACCTTCATGCTTCGCTTCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAACTTCAGCCACGAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTCGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCCGTAAAACCGGCGAAGTCCGAAGAAAATCTGTCGCAGTGGGCGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTAGTTCCGATAGCTTTGGTTCCTTTTTCTGCAGAAATCAACGAATAATGCTGGAGAATTTTGAGTTTGTTTTTGTTTTTCTACTACGAATTATTGTGTTTCGGAAACTCACTAGTCACAGCAATTAATTGTTGGAAACATCTGAAGTTTGGGAGGATTTGTACACTGAAAAGCTATTAGGCAGTACAGTTGTTTGTTCAATTATCTTCTTTAAAGGCTTGAATTATGTTCTACTTAAGTTAAGCTGGTCTTCATTTCCAATTATTGTAAAATCAGTTTCTTCATCAATAATTCTTTTGGGGGGTGGGGAGTTTGAGCTTTGATGTGTAATTGAAATCTTGGAAAGAAATTTCTCATTATCATTTTTTCAAGTGATTTTATCTACCTTGTTTGTGCTTACGGATTCTGTCAAGGCTTCTGAATGTTGTAATTTGTAATTTCTCGTTCGTACAGTTACGGTTTCAAGTTCCTTCCGCCAATATAATGCCACGAAACCATTTGACACTTTCAGCCCACTGCAGGTTTCCTTTTGGGGACACGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATCCCCTCAGCTGAAGAAGAAGACTTTAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATCGTTGGAAAGCCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGAAAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTAAACTACTAAATTATATAATCGATGAGGAATTCATTGTATGGCAGTGCTTGAACCTTAGGTTGTTCTATTTTCAGATCTTGCTATTTTATAGATTTTGCTTTACCCATTGTAGTTATAAGGCTCATTAACAATAGTTAAACGTGGAAAGACCGTAAATAAGGGATTATTCACAGCTCTAAATTAAGATGGAAATTTTGGTTCTTTTAACATATCTAGAGCTATAAATTGATCTGTTGTTTTCTGCCAGAAAGTGCTTTTATTTAACACTAGAGTGGTTGATCCTATTATAAAACTTCAGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGGTGAGCTTCAGCAGGGGAAAATTTCCATTCTATTAGGTTTAAGATTAAAGATTCGTTGTTCGGAATTTAACCTTGAAATCATTCCGGAATAGTTGATAGGCTGATAACTGATGAGATTTGACTGGCAGCTTGTGGCAGGAAATCATGGGCCAGACACCAGTGTTCACTAGTTTAGCTCATTGAAAGAAAAAATTTAGTCCCGATTACGTGATGCTAATTGGTTTTCTTTACCTTTTTCAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACAGTCAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGGTTTAACTTTTATATTTCTCTCTCTATCTCCCTTCTTCTAACCGTGTTACTCTGAACTGGCTTACTCTGAACTTTTATATTTCATTAAATCTTGACTTTATTTGCTCGATCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGAGTAAGTGAAATCGATGACCGTTCCTTTGTGTTTCTACTTTCTAGTGAAGCCACCCTAATTGAAAATATGAAAAATGGTTTAGAGGTGCAATGCGGTTTCATTTTAACCCTTACCAAAAGCCATATCCCTCCTTCTTTTACTAGTTACTCGAGCATTGAATATTGTACAATAAGTTTTCATCTTAGACTTGGGGATGCATAGTAATCCAATGACGGAATCCTTTAATCGCATTGCTTTTCAGATATATTATCATTAGAAACTTTTGTGGTTTTTTTTCTTAAACAAAATCATGAAAACGTCGTAAGTGAAAACTAATTTTTCATCTTATTCATCATTAACTTGAAACCAGAGGGCAAGTAAATTCTACATTGTCATTCTATAGGTTATATCTATGCTGTTGCTTCCCAAAATTTCAGCTAGACCTCTCAGCCGACTCCCGACTCCTGTTAAATATTAACTGCTTGTTGAATTCATGATGTTTCTCATAACAGATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGATGTTGGTTATCGTTCAAAGGTAAGTTCTTGAAGACTCCTGCTGATTTGTGATTGAGATAGAAATATCATATCTTTTAGTTATAAATAGATGAAATTGACCTTCTTGGAGGGGGTACTCAATGGATCTGGTTGATTTGTGTAGCAGATCACATAAGGGAAGGGCCAGACAGAAGCCTAAAATGTGATTATTTAGTTTTTCATTGACATGCTATATGTTGGAACTGAAATATACAGTACTAAAAGTGCACTGTGCAGCACAAATTATTCATTCCAGCAAGTATGAATGAGAGAAAAACTAAAAGATTCATTTTTTAAAGGATCAGTTTGTGCATGAAATATAGCTGGAAAAGCCTCTGTTTTTGTGACGATGAGAAAAAAATGAATTGTTTTTAAGGCATTTTAATTAGCCTGGTGCATATTTATGAAATAAGGTGTGGGTATGTTCTACATCTTCCCCGGAGTAGTTAGATTTCTCATTTAATCACATACCTTCCTGCAATTCTCAACGTGAGGAATGACGGTACTAACATAGAACTTGTACGATCTTGTGTTCATAATAAATAATTGCATTGTCCAAGATACCTTGAACTTGTAGTCGGAAGTCATGTATATATTGTGCAAAGTGTAGTGCATATCTCATTATCCCTTGGCAATGAATATATAATCTGTATGCTGAATTTGAAGACACATCCTTTTACGACCTTACTTAAACAAGATCAGTTCTATAGGTTGTACATTTGTGTCGTTGAGTTCTAAAGATTCGTCATTTTGGATTTATCATAACCGCCAGACAAAAACGAAGTCATCCCTTTACCCAAAATCGATCATCGCCTTGGTGAATATTTTTTACAGTTTTTCTTGTTTCTGGTGTGAGTTGTACAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACTTATACTCTGTAAAGTGAGTATCACCATACCGTGAAATTAGTCTGTTCCTTTATAAATTCTCTTTTTATGGCTCTCCCTTAGGTGAGTAATGTGTAAGAAGAAGAATCAAAGCTCTATTCCTTGCTTCTTCTTTTGGGGTGGGTTTGGGATGAATTTTGGAAGGTAAAAAATGTTTTTAACCTATTTGGAAAGTTTTTGTGGTGTTCAGTTTGATAATTGAAAATAATTTAAAATTTTTTAAAAACACTTGAAGAATATTTCTTTCAAAAGTATGCATAAAAGGGGTGCCTTCACTGTTCTTTCTCATTTTGAAAAGTCACAATCAATATGGCTGCAAACACAATGCAATTGTGCTATACTTCACTTTCACATATTCTCTTATAATCAATCTATTTACATCTCCGCAGGTTTATAAACGATAAGAAAGGTTTTGTACTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGAACTTTGAGATTTTACTCGGTAATTAATTCCTCTTCCTTCTCTTCTTTGATTTTTCTTTTGCCATCTCAGGCACTTGCTGTGTGTAAATGTAATTTTTTTAACCCTACATTCCAAACTGTTCTAAAATTATATGCAGAATATAAAAGCAGTAAAAGGGTAACCTTTAAGAACATGTATTATTTTGTTTCTTGAAATTTGTTATAACTCAAAAATATTCCAGAAAGGCTATTTATAAACTTTATTTTGTGTAGAGGCTGGTATTTGGGATTGCTTGAAAATCAAAATTTCCGTTTACTGCTTGATTATGTTGTAGGGTTGCTGAATTGTTGCAACATTGTTCTCATTGGTGTATCAAAGATTCAGGTTTTGGCATTTTTCTTTTTCAGGTTACAGAATCAGATTTTATATGATGCTTGCGATGGAAATTTTGTATCATTAAATAACAGCTTTGCGTTCTAGATTTCGACGATGGGACGAGGTGCTAATGTTCCCCAGTTACATATTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGCATTTCTGAAGGTCAAGAACTTTTAGCAATGCATTGATTAGAAAGAATCCAGGTCGTGAATAGTTCTTTCAACTCTTGTTAATACCTGTAATCTAAACGTATACCTGTTCAAGTGCCCATTGTTGATTGCCAAAAGAAAAGGGATGAATTTGGAAGATACTAATACATTTTTATGTCCCAAATTTTCTTATGTGCTTTATCATTTCACGAAAATTTACAGGATCATAGTTCAAAAATTACAAGTCAAGAATGTTTTCTGAACATGCTTGCGTTAGAAAAGAAAAATCAATAACAATATAAGGAAACTCAAAAGGTGAAAATAAAATATAAAGAAACTAATATTCATGATAAACACAGCTATGATATGCGTGAATGAATGTCAAATTCTTATAAAAGCATCAGAAATAGTAACTGCCACAATAAACAAATCCAACAAGGTAGGGTAGCACCAGCAAATTGCCAAAATATGAACTTATAGCAATTGTTAACGAAGGAAAGAAAAATGAACATGGAGTTAAAACAAGTGATAAACAGAAAAATGGAAGTGGCTAGCTAGTTGTTCCATTATAAACTGATGCATTAAACAAAATTCAACAGGTAAAAGTGTTCACAAATATCAGAATAACCAAACAAAAAGCATAGGGCAGAAAAAACCCACAATTTTGGCTCCCTAAAAACCAATATATAGTGAATGACAATGTTAAAGCATCTAAAAAAGTGAAGTTCCCTTTCCCTTCTTGTCTCCACCAATCTCAAAATGCTTGCATCTCTGCATGAATGTGAAGGTAGGCATTAATGAAACAGAAATTGAAAGACAATGGTATTAAGTTTCCATCCAAGAAGAGTTCACGTTAGATAATACAAACCTTAATGGCATGCTGTGACACATGCTTGCAACCCTGGCATTGCAACCTCAGCACAATCTTCTTGGTAGTTTTTGCCTGGCAGGGGGAATTAAAGTTCTCATGATTATTTATTCGAGGGAAAATGAGCAAAATGTAGTTTGAGTAGATATGGAAGGGATTTTCACCTTCTTGTGAAAGACGGGCTTGGTCTGGCCTCCGTATCCTGATTGTTTACGATCATAACGACGCTTTCCTTGGGCAGCAAGACTGTCCTTACCCTTTTTGTACTGGGTAACCTTGTGCAGGGTATGCTTTTTGCATTCCTTGCTCTTGCAGTAAGTCTTCTTCGTCTTGGGAACGTTCACCTAATTAGTAGAAAAATTCAATATCATTTCACATAACAGAGAATAATTTTAAGATCATAAATTAGAACAACTCCATGAGAAATATAAAAAACTTCGAAATTAGCTGAATATCTGGCAGAGTAAAACATAATTGGAAATTATACAAAAAGTGCTTGAACAGAGAAACCAGAGCTAA

mRNA sequence

TTTTTCATCTTGCAGTTTGAGACGCTTCAAAATCACCCGCGAACGGGCTGAGAGAACTTCCTTCTGGATAATGTGAGAGATAAGAGGTCGACCAGCACTGCCCTGCTCCTTTCCTTCTCTCTTCAATGGCGACTCTGCAACAACTCCTTAGACCTTCATGCTTCGCTTCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAACTTCAGCCACGAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTCGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCCGTAAAACCGGCGAAGTCCGAAGAAAATCTGTCGCAGTGGGCGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTTCCTTTTGGGGACACGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATCCCCTCAGCTGAAGAAGAAGACTTTAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATCGTTGGAAAGCCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGAAAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACAGTCAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGAATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGATGTTGGTTATCGTTCAAAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACTTATACTCTGTAAAGTTTATAAACGATAAGAAAGGTTTTGTACTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGAACTTTGAGATTTTACTCGGTTACAGAATCAGATTTTATATGATGCTTGCGATGGAAATTTTGTATCATTAAATAACAGCTTTGCGTTCTAGATTTCGACGATGGGACGAGGTGCTAATGTTCCCCAGTTACATATTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGCATTTCTGAAGGTCAAGAACTTTTAGCAATGCATTGATTAGAAAGAATCCAGGTCGTGAATAGTTCTTTCAACTCTTGTTAATACCTGTAATCTAAACGTATACCTGTTCAAGTGCCCATTGTTGATTGCCAAAAGAAAAGGGATGAATTTGGAAGATACTAATACATTTTTATGTCCCAAATTTTCTTATGTGCTTTATCATTTCACGAAAATTTACAGGATCATAGTTCAAAAATTACAAGTCAAGAATGTTTTCTGAACATGCTTGCGTTAGAAAAGAAAAATCAATAACAATATAAGGAAACTCAAAAGGTGAAAATAAAATATAAAGAAACTAATATTCATGATAAACACAGCTATGATATGCGTGAATGAATGTCAAATTCTTATAAAAGCATCAGAAATAGTAACTGCCACAATAAACAAATCCAACAAGGTAGGGTAGCACCAGCAAATTGCCAAAATATGAACTTATAGCAATTGTTAACGAAGGAAAGAAAAATGAACATGGAGTTAAAACAAGTGATAAACAGAAAAATGGAAGTGGCTAGCTAGTTGTTCCATTATAAACTGATGCATTAAACAAAATTCAACAGGTAAAAGTGTTCACAAATATCAGAATAACCAAACAAAAAGCATAGGGCAGAAAAAACCCACAATTTTGGCTCCCTAAAAACCAATATATAGTGAATGACAATGTTAAAGCATCTAAAAAAGTGAAGTTCCCTTTCCCTTCTTGTCTCCACCAATCTCAAAATGCTTGCATCTCTGCATGAATGTGAAGGTAGGCATTAATGAAACAGAAATTGAAAGACAATGGTATTAAGTTTCCATCCAAGAAGAGTTCACGTTAGATAATACAAACCTTAATGGCATGCTGTGACACATGCTTGCAACCCTGGCATTGCAACCTCAGCACAATCTTCTTGGTAGTTTTTGCCTGGCAGGGGGAATTAAAGTTCTCATGATTATTTATTCGAGGGAAAATGAGCAAAATGTAGTTTGAGTAGATATGGAAGGGATTTTCACCTTCTTGTGAAAGACGGGCTTGGTCTGGCCTCCGTATCCTGATTGTTTACGATCATAACGACGCTTTCCTTGGGCAGCAAGACTGTCCTTACCCTTTTTGTACTGGGTAACCTTGTGCAGGGTATGCTTTTTGCATTCCTTGCTCTTGCAGTAAGTCTTCTTCGTCTTGGGAACGTTCACCTAATTAGTAGAAAAATTCAATATCATTTCACATAACAGAGAATAATTTTAAGATCATAAATTAGAACAACTCCATGAGAAATATAAAAAACTTCGAAATTAGCTGAATATCTGGCAGAGTAAAACATAATTGGAAATTATACAAAAAGTGCTTGAACAGAGAAACCAGAGCTAA

Coding sequence (CDS)

ATGGCGACTCTGCAACAACTCCTTAGACCTTCATGCTTCGCTTCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAACTTCAGCCACGAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTCGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCCGTAAAACCGGCGAAGTCCGAAGAAAATCTGTCGCAGTGGGCGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTTCCTTTTGGGGACACGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATCCCCTCAGCTGAAGAAGAAGACTTTAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATCGTTGGAAAGCCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGAAAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACAGTCAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGAATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGATGTTGGTTATCGTTCAAAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACTTATACTCTGTAAAGTTTATAAACGATAAGAAAGGTTTTGTACTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGA

Protein sequence

MATLQQLLRPSCFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Homology
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BLAST of Cp4.1LG17g07750 vs. Swiss-Prot
Match: P2SAF_ARATH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1)

HSP 1 Score: 627.1 bits (1616), Expect = 1.3e-178
Identity = 305/392 (77.81%), Postives = 351/392 (89.54%), Query Frame = 1 

Query: 15  SSSPRHSFTSLSQ---PQLQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIA 74
           S SPR     +S    P+       S +P +S  + S +RRE + ++AA VSLSLS ++ 
Sbjct: 16  SVSPRFLSQRISHRLIPKASSSPPPSPSPSSSSSSLSFSRRELLYQSAA-VSLSLSSIVG 75

Query: 75  PVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWA 134
           P   A+++E LS+W R++LPIDPGVVLLDIAFVPD+ + GFLLGTRQT+LETKDGG TW 
Sbjct: 76  P---ARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWN 135

Query: 135 PRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVY 194
           PRSIPSAEEEDFNYRFNSISF+GKEGWI+GKPAILLYT+DAGE+W+RIPLS+QLPGDMV+
Sbjct: 136 PRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVF 195

Query: 195 IKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNT 254
           IKAT +KSAEMVTDEGAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ 
Sbjct: 196 IKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSA 255

Query: 255 VNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGL 314
           VNRSPDGRYVAVSSRGNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL
Sbjct: 256 VNRSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 315

Query: 315 FLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAA 374
           +LSKGTGI+E+FEEVPVQSRGFGILDVGYRS+EEAWAAGGSG+LL+T NGGK+W RDKAA
Sbjct: 316 YLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAA 375

Query: 375 DNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           DNIAANLY+VKF++DKKGFVLGNDGVLL+Y+G
Sbjct: 376 DNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403

[Close]
BLAST of Cp4.1LG17g07750 vs. Swiss-Prot
Match: P2SAF_ORYSJ (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1)

HSP 1 Score: 620.2 bits (1598), Expect = 1.6e-176
Identity = 307/397 (77.33%), Postives = 338/397 (85.14%), Query Frame = 1 

Query: 33  RTVNSVTPKASIKNSSINRREFVAETA-AAVSLSLSPLIAPVKP---AKSEENLSQWARL 92
           R    + P+A   + S  RR F+A+TA A+ + ++ PL+ P  P   A    +LS+W R+
Sbjct: 20  RRCRLLVPRAHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQPPSLSEWERV 79

Query: 93  YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 152
            LPIDPGVVLLDIAFVPDD +HGFLLGTRQTILETK+GG TW PRSIPSAE+EDFNYRFN
Sbjct: 80  LLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDEDFNYRFN 139

Query: 153 SISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 212
           S+SF GKEGWI+GKPAILL+TSDAG+SWERIPLSAQLPG+MVYIKATGE+SAEMVTDEGA
Sbjct: 140 SVSFMGKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQSAEMVTDEGA 199

Query: 213 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 272
           IYVTSN+GYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN
Sbjct: 200 IYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 259

Query: 273 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTG---------- 332
           FYLTWEPGQPFWQPHNRA+ARRIQNMGWRADGGLWLLVRGGGLFLSKG+G          
Sbjct: 260 FYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGFQFFYRGLND 319

Query: 333 ------------ISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWT 392
                       I+EDFEE  VQSRGFGILDVGYRSK+EAWAAGGSGVLLKTTNGGKTW 
Sbjct: 320 AHAISYLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWV 379

Query: 393 RDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           RDKAADNIAANLYSVKF+ D KG+VLGNDGVLL+Y+G
Sbjct: 380 RDKAADNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416

[Close]
BLAST of Cp4.1LG17g07750 vs. Swiss-Prot
Match: P2SAF_GUITH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia theta GN=hcf136 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.3e-96
Identity = 168/362 (46.41%), Postives = 246/362 (67.96%), Query Frame = 1 

Query: 49  INRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDL 108
           INR +F+       +  L P +  + P  +  N + W ++ LP+D   VL DI F   + 
Sbjct: 42  INRTKFI-------NYLLYPTLTSLYPKFTHANTTSWTKVDLPVDS--VLFDIEFTDPEC 101

Query: 109 NHGFLLGTRQTILETKDGGRTWAPRSIPSAE-EEDFNYRFNSISFQGKEGWIVGKPAILL 168
            HG+L+G++ T LET DGG TW PR+  + + +E+  YRF +ISF+G+EGW++GKPAI+L
Sbjct: 102 KHGWLVGSKGTFLETDDGGNTWVPRTFANLDPDEELTYRFENISFEGQEGWVIGKPAIIL 161

Query: 169 YTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETV 228
           YT D G++W R+P+S +LPG+   IKA G +SAE+ T  GAIYVT+N G NWKA V+ET+
Sbjct: 162 YTKDGGKTWFRVPVSPKLPGEPCLIKALGSESAELTTTSGAIYVTNNAGRNWKAQVKETI 221

Query: 229 SATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAI 288
            +TLNRT+SSG+SGASY+TG    V R+ +G+Y+A+SSRGNFYLTWEPGQ FW P  R  
Sbjct: 222 DSTLNRTISSGVSGASYFTGNVINVIRNSEGKYLAISSRGNFYLTWEPGQDFWIPRARET 281

Query: 289 ARRIQNMGWRADG---GLWLLVRGGGLFLSKGT----GISE-DFEEVPVQSRGFGILDVG 348
           +RRIQ+MG+  +    G+W+  RGGGL +S        IS  +FE + +++ G+GILD  
Sbjct: 282 SRRIQSMGFIQNDNQKGIWMSTRGGGLSVSTKNFDFESISSFNFENIDIKTGGYGILDAA 341

Query: 349 YRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLL 402
           + + ++ W   G G++  +T+ GK WT+    D ++ NLY +KF+N+ KGF+LG++G+LL
Sbjct: 342 FVNDKDIWIICGGGIVYNSTDKGKNWTKVDGIDKLSGNLYKIKFVNNNKGFILGSNGLLL 394

[Close]
BLAST of Cp4.1LG17g07750 vs. Swiss-Prot
Match: YC48L_SYNY3 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr2034 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 9.9e-81
Identity = 155/318 (48.74%), Postives = 201/318 (63.21%), Query Frame = 1 

Query: 85  WARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFN 144
           W  + L  D      DIAF  +D NHG+L+GT++TI ET DGG TW  + I   EE+   
Sbjct: 40  WQEIALETDS--TFADIAFT-EDPNHGWLVGTKETIFETTDGGDTWEQKLIDLGEEK--- 99

Query: 145 YRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVT 204
             F+++SF G EGWI GKP+ILL+T+D G++W RIPLS +LPG    I A G ++AEM+T
Sbjct: 100 ASFSAVSFSGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPGAPYSIIALGPQTAEMIT 159

Query: 205 DEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVS 264
           D GAIY T+N G NWKA V+  V                   G   T+ RS DGRYVAVS
Sbjct: 160 DLGAIYKTTNGGKNWKALVEGAV-------------------GVARTIQRSTDGRYVAVS 219

Query: 265 SRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFE 324
           +RGNFY TW PGQ  W PHNR  +RR+Q MG+  DG LWLL RGG L  S      E  +
Sbjct: 220 ARGNFYSTWAPGQTEWTPHNRNSSRRLQTMGYGKDGQLWLLARGGQLQFSTDPDAEEWSD 279

Query: 325 EVPVQSRG-FGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKF 384
            +  Q +G +G+LD+ +R+ EE W AG SG LL + +GG+TW +D   ++I ANLY V F
Sbjct: 280 VIAPQDKGSWGLLDLSFRTPEEVWVAGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVF 332

Query: 385 INDKKGFVLGNDGVLLQY 402
           ++ +KGFVLG DG+LL+Y
Sbjct: 340 LSPEKGFVLGQDGILLKY 332

[Close]
BLAST of Cp4.1LG17g07750 vs. Swiss-Prot
Match: YC48L_THEEB (Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=1 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.1e-79
Identity = 150/343 (43.73%), Postives = 210/343 (61.22%), Query Frame = 1 

Query: 62  VSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTIL 121
           VSLS   L  P        + + W  + LP      +LD++F+  D +HG+L+G   T++
Sbjct: 30  VSLSTPALAIPAL------DYNPWEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLM 89

Query: 122 ETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPL 181
           ET+DGG+TW PR++     +   YRFNS+SFQG EGWIVG+P I+L+T+D G+SW +IPL
Sbjct: 90  ETRDGGQTWEPRTLVLDHSD---YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPL 149

Query: 182 SAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISG 241
             +LPG    IKA G  SAEM+T+ GAIY T + G NW+A VQE +              
Sbjct: 150 DPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAI-------------- 209

Query: 242 ASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGG 301
                G    +NRSP G YVAVSSRG+FY TWEPGQ  W+PHNR  +RR+ NMG+  DG 
Sbjct: 210 -----GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR 269

Query: 302 LWLLVRGGGLFLSKGTGISEDFEEV--PVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTT 361
           LW++V GG +  S     SE++ E+  P++    G LD+ YR+  E W AGG+G LL + 
Sbjct: 270 LWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQ 329

Query: 362 NGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYL 403
           +GG+TW +D     + +N Y + F +  +GF+LG  G+LL+Y+
Sbjct: 330 DGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 339

[Close]
BLAST of Cp4.1LG17g07750 vs. TrEMBL
Match: A0A0A0K5Y1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420730 PE=4 SV=1)

HSP 1 Score: 753.1 bits (1943), Expect = 1.8e-214
Identity = 380/409 (92.91%), Postives = 393/409 (96.09%), Query Frame = 1 

Query: 1   MATLQQ-LLRPS----CFASS-SPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREF 60
           MATLQQ LL+PS     FASS SPRHS   LSQPQL PRT++S TPKAS+ NSSINRR F
Sbjct: 1   MATLQQQLLKPSWTSSLFASSTSPRHS---LSQPQLLPRTLSSTTPKASLHNSSINRRHF 60

Query: 61  VAETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLL 120
           VA+TAAAVSLSLSP IAPV+PAKSEE+LS+W RLYLPIDPGVVLLDIAFVPDD+NHGFLL
Sbjct: 61  VADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMNHGFLL 120

Query: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGE 180
           GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGE
Sbjct: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGE 180

Query: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240
           SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT
Sbjct: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240

Query: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300
           VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM
Sbjct: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300

Query: 301 GWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360
           GWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV
Sbjct: 301 GWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360

Query: 361 LLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           LLKTTNGG++WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Sbjct: 361 LLKTTNGGRSWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 406

[Close]
BLAST of Cp4.1LG17g07750 vs. TrEMBL
Match: W9R3A0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018094 PE=4 SV=1)

HSP 1 Score: 671.0 bits (1730), Expect = 9.0e-190
Identity = 336/403 (83.37%), Postives = 365/403 (90.57%), Query Frame = 1 

Query: 7   LLRPSCFA-----SSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAAA 66
           LL+PS  +     ++SPRH  +S   P+  P+  +S +  +S  +S + RR F+AET AA
Sbjct: 16  LLKPSFTSLFFNNTTSPRHFRSSQPPPRFIPKASSSSSSSSS--SSLLCRRRFIAET-AA 75

Query: 67  VSLSL-SPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 126
           VSLSL SP + PV+PAKSE+ LS+W R YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 76  VSLSLASPFLGPVQPAKSEDALSEWERCYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 135

Query: 127 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 186
           LETKDGG TW PRSIPSAE+EDFNYRFNSISF GKEGWIVGKPAILLYTSDAGE+WERI 
Sbjct: 136 LETKDGGNTWVPRSIPSAEDEDFNYRFNSISFIGKEGWIVGKPAILLYTSDAGENWERIA 195

Query: 187 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 246
           LSAQLPGDMVYIKATGEK AEMVTD+GAIYVTSNKGYNW+AAVQETVSATLNRTVSSGIS
Sbjct: 196 LSAQLPGDMVYIKATGEKGAEMVTDQGAIYVTSNKGYNWRAAVQETVSATLNRTVSSGIS 255

Query: 247 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 306
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADG
Sbjct: 256 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADG 315

Query: 307 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 366
           GLWLLVRGGGLFLSKGTGI+EDFEEV VQSRGFGILDVGYRS+EEAWAAGGSG+LL+TTN
Sbjct: 316 GLWLLVRGGGLFLSKGTGITEDFEEVAVQSRGFGILDVGYRSQEEAWAAGGSGILLRTTN 375

Query: 367 GGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           GGK+W RDKAADNIAANLYSVKFI+DKKGFVLGNDGVLL+YLG
Sbjct: 376 GGKSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 415

[Close]
BLAST of Cp4.1LG17g07750 vs. TrEMBL
Match: A0A0D2SL22_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G210500 PE=4 SV=1)

HSP 1 Score: 665.6 bits (1716), Expect = 3.8e-188
Identity = 335/401 (83.54%), Postives = 360/401 (89.78%), Query Frame = 1 

Query: 8   LRPSCFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSS-----INRREFVAETAAAV 67
           L PS  +   PR     LS P  +  +  S+   +S  +SS     +NRR+ +++TA+ +
Sbjct: 16  LIPSLTSLFPPRLLHRPLSLPHSRFISKASLHHPSSPSSSSSPPSLVNRRQIISQTAS-I 75

Query: 68  SLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 127
           SLSL+ L +   PAKSEE LS+W R+YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE
Sbjct: 76  SLSLATLSSLPLPAKSEEVLSEWERVYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 135

Query: 128 TKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLS 187
           TKDGG TW  RSIPSAE+EDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGESWERIPLS
Sbjct: 136 TKDGGNTWTQRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLS 195

Query: 188 AQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGA 247
           AQLPGDMVYIKATGEKSAEMVTD+GAIYVTSN+GYNW+AAVQETVSATLNRTVSSGISGA
Sbjct: 196 AQLPGDMVYIKATGEKSAEMVTDQGAIYVTSNRGYNWRAAVQETVSATLNRTVSSGISGA 255

Query: 248 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 307
           SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL
Sbjct: 256 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 315

Query: 308 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG 367
           WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRS+EEAWAAGGSGVLL+TTNGG
Sbjct: 316 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGVLLRTTNGG 375

Query: 368 KTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           K WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLL+YLG
Sbjct: 376 KNWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLRYLG 415

[Close]
BLAST of Cp4.1LG17g07750 vs. TrEMBL
Match: A0A061E463_THECC (Photosystem II stability/assembly factor, chloroplast (HCF136) isoform 1 OS=Theobroma cacao GN=TCM_007737 PE=4 SV=1)

HSP 1 Score: 663.3 bits (1710), Expect = 1.9e-187
Identity = 331/401 (82.54%), Postives = 361/401 (90.02%), Query Frame = 1 

Query: 8   LRPSCFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSS-----INRREFVAETAAAV 67
           L+PS  +  SPR  F   SQ Q  PR +   + +    +SS     +NRR+ +++TA+ +
Sbjct: 14  LKPSLTSLFSPR--FLHRSQTQPHPRLICKASLQQPHHSSSSSPTLVNRRQLISQTAS-L 73

Query: 68  SLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 127
           SLS++ L A   PAKSEE LS+W R+YLPIDPGVVLLDIAFVPDD NHGFLLGTRQTILE
Sbjct: 74  SLSVATLSALQLPAKSEEVLSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILE 133

Query: 128 TKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLS 187
           TKDGG TW PRSIPSAE+EDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGESWERIPLS
Sbjct: 134 TKDGGNTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLS 193

Query: 188 AQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGA 247
           AQLPGDMVYIKAT EKSAEMVTD+GAIYVTSN+G+NW+AAVQETVSATLNRTVSSGISGA
Sbjct: 194 AQLPGDMVYIKATDEKSAEMVTDQGAIYVTSNRGFNWRAAVQETVSATLNRTVSSGISGA 253

Query: 248 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 307
           SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADGGL
Sbjct: 254 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGL 313

Query: 308 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG 367
           WLLVRGGGLFLSKGTGI+EDFEE+PVQSRGFGILDVGYRS EEAWAAGGSGVLL+TTNGG
Sbjct: 314 WLLVRGGGLFLSKGTGITEDFEEIPVQSRGFGILDVGYRSMEEAWAAGGSGVLLRTTNGG 373

Query: 368 KTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           K+WTRDKAADNIAANLYSVKFI+DKKGFVLGNDGVLL+YLG
Sbjct: 374 KSWTRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 411

[Close]
BLAST of Cp4.1LG17g07750 vs. TrEMBL
Match: D7T9G8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02150 PE=4 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 7.9e-186
Identity = 320/368 (86.96%), Postives = 348/368 (94.57%), Query Frame = 1 

Query: 38  VTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKP-AKSEENL-SQWARLYLPIDPG 97
           V P+A ++  S+ RR  +AETAA   +S++PLI  ++P AKSEE L S+W R+YLPIDPG
Sbjct: 40  VVPRACLQKPSLTRRHLLAETAA---ISVAPLILGIEPPAKSEEPLLSEWERVYLPIDPG 99

Query: 98  VVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGK 157
           VVLLDIAFVPDDL+HGFLLGTRQTI+ETKDGG TW PRSIPSAE+EDFNYRFNSISF+GK
Sbjct: 100 VVLLDIAFVPDDLSHGFLLGTRQTIMETKDGGNTWVPRSIPSAEDEDFNYRFNSISFKGK 159

Query: 158 EGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNK 217
           EGWIVGKP+ILLYTSDAGESWERIPLSAQLPGD+VYIKATGEKSAEMVTDEGAIYVTSN+
Sbjct: 160 EGWIVGKPSILLYTSDAGESWERIPLSAQLPGDIVYIKATGEKSAEMVTDEGAIYVTSNR 219

Query: 218 GYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEP 277
           GYNW+AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEP
Sbjct: 220 GYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEP 279

Query: 278 GQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGI 337
           GQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL+LSKGTGISEDFEE+PVQSRGFGI
Sbjct: 280 GQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGISEDFEEIPVQSRGFGI 339

Query: 338 LDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGND 397
           LDVGYRSKEEAWAAGGSGVLL+TTNGGKTWTRDKAADNIAANLYSVKFI+D KGFVLGND
Sbjct: 340 LDVGYRSKEEAWAAGGSGVLLRTTNGGKTWTRDKAADNIAANLYSVKFIDDTKGFVLGND 399

Query: 398 GVLLQYLG 404
           GVLL++LG
Sbjct: 400 GVLLRFLG 404

[Close]
BLAST of Cp4.1LG17g07750 vs. TAIR10
Match: AT5G23120.1 (AT5G23120.1 photosystem II stability/assembly factor, chloroplast (HCF136))

HSP 1 Score: 627.1 bits (1616), Expect = 7.5e-180
Identity = 305/392 (77.81%), Postives = 351/392 (89.54%), Query Frame = 1 

Query: 15  SSSPRHSFTSLSQ---PQLQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIA 74
           S SPR     +S    P+       S +P +S  + S +RRE + ++AA VSLSLS ++ 
Sbjct: 16  SVSPRFLSQRISHRLIPKASSSPPPSPSPSSSSSSLSFSRRELLYQSAA-VSLSLSSIVG 75

Query: 75  PVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWA 134
           P   A+++E LS+W R++LPIDPGVVLLDIAFVPD+ + GFLLGTRQT+LETKDGG TW 
Sbjct: 76  P---ARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWN 135

Query: 135 PRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVY 194
           PRSIPSAEEEDFNYRFNSISF+GKEGWI+GKPAILLYT+DAGE+W+RIPLS+QLPGDMV+
Sbjct: 136 PRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVF 195

Query: 195 IKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNT 254
           IKAT +KSAEMVTDEGAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ 
Sbjct: 196 IKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSA 255

Query: 255 VNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGL 314
           VNRSPDGRYVAVSSRGNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL
Sbjct: 256 VNRSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 315

Query: 315 FLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAA 374
           +LSKGTGI+E+FEEVPVQSRGFGILDVGYRS+EEAWAAGGSG+LL+T NGGK+W RDKAA
Sbjct: 316 YLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAA 375

Query: 375 DNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           DNIAANLY+VKF++DKKGFVLGNDGVLL+Y+G
Sbjct: 376 DNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403

[Close]
BLAST of Cp4.1LG17g07750 vs. NCBI nr
Match: gi|659122869|ref|XP_008461367.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucumis melo])

HSP 1 Score: 754.6 bits (1947), Expect = 8.9e-215
Identity = 378/408 (92.65%), Postives = 393/408 (96.32%), Query Frame = 1 

Query: 1   MATLQQ-LLRPS----CFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFV 60
           MATLQQ LL+PS     FASSSPRHS   LSQPQL PRT++S +PKAS+ NSSINRR+FV
Sbjct: 1   MATLQQQLLKPSWTSSLFASSSPRHS---LSQPQLLPRTISSTSPKASLHNSSINRRQFV 60

Query: 61  AETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLG 120
           A+TAAAVSLSLSP IAPV+PAKSEE+LS+W RLYLPIDPGVVLLDIAFVPDDLNHGFLLG
Sbjct: 61  ADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLNHGFLLG 120

Query: 121 TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGES 180
           TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGES
Sbjct: 121 TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGES 180

Query: 181 WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV 240
           WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV
Sbjct: 181 WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV 240

Query: 241 SSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG 300
           SSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG
Sbjct: 241 SSGISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG 300

Query: 301 WRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL 360
           WRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL
Sbjct: 301 WRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL 360

Query: 361 LKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           LKTTNGG++WTRDKAADNIAANLYSVKFIN+KKGFVLGNDGVLLQYLG
Sbjct: 361 LKTTNGGRSWTRDKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 405

[Close]
BLAST of Cp4.1LG17g07750 vs. NCBI nr
Match: gi|449436353|ref|XP_004135957.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucumis sativus])

HSP 1 Score: 753.1 bits (1943), Expect = 2.6e-214
Identity = 380/409 (92.91%), Postives = 393/409 (96.09%), Query Frame = 1 

Query: 1   MATLQQ-LLRPS----CFASS-SPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREF 60
           MATLQQ LL+PS     FASS SPRHS   LSQPQL PRT++S TPKAS+ NSSINRR F
Sbjct: 1   MATLQQQLLKPSWTSSLFASSTSPRHS---LSQPQLLPRTLSSTTPKASLHNSSINRRHF 60

Query: 61  VAETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLL 120
           VA+TAAAVSLSLSP IAPV+PAKSEE+LS+W RLYLPIDPGVVLLDIAFVPDD+NHGFLL
Sbjct: 61  VADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMNHGFLL 120

Query: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGE 180
           GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGE
Sbjct: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGE 180

Query: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240
           SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT
Sbjct: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240

Query: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300
           VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM
Sbjct: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300

Query: 301 GWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360
           GWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV
Sbjct: 301 GWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360

Query: 361 LLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           LLKTTNGG++WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Sbjct: 361 LLKTTNGGRSWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 406

[Close]
BLAST of Cp4.1LG17g07750 vs. NCBI nr
Match: gi|703090427|ref|XP_010094078.1| (hypothetical protein L484_018094 [Morus notabilis])

HSP 1 Score: 671.0 bits (1730), Expect = 1.3e-189
Identity = 336/403 (83.37%), Postives = 365/403 (90.57%), Query Frame = 1 

Query: 7   LLRPSCFA-----SSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAAA 66
           LL+PS  +     ++SPRH  +S   P+  P+  +S +  +S  +S + RR F+AET AA
Sbjct: 16  LLKPSFTSLFFNNTTSPRHFRSSQPPPRFIPKASSSSSSSSS--SSLLCRRRFIAET-AA 75

Query: 67  VSLSL-SPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 126
           VSLSL SP + PV+PAKSE+ LS+W R YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 76  VSLSLASPFLGPVQPAKSEDALSEWERCYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 135

Query: 127 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 186
           LETKDGG TW PRSIPSAE+EDFNYRFNSISF GKEGWIVGKPAILLYTSDAGE+WERI 
Sbjct: 136 LETKDGGNTWVPRSIPSAEDEDFNYRFNSISFIGKEGWIVGKPAILLYTSDAGENWERIA 195

Query: 187 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 246
           LSAQLPGDMVYIKATGEK AEMVTD+GAIYVTSNKGYNW+AAVQETVSATLNRTVSSGIS
Sbjct: 196 LSAQLPGDMVYIKATGEKGAEMVTDQGAIYVTSNKGYNWRAAVQETVSATLNRTVSSGIS 255

Query: 247 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 306
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADG
Sbjct: 256 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADG 315

Query: 307 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 366
           GLWLLVRGGGLFLSKGTGI+EDFEEV VQSRGFGILDVGYRS+EEAWAAGGSG+LL+TTN
Sbjct: 316 GLWLLVRGGGLFLSKGTGITEDFEEVAVQSRGFGILDVGYRSQEEAWAAGGSGILLRTTN 375

Query: 367 GGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           GGK+W RDKAADNIAANLYSVKFI+DKKGFVLGNDGVLL+YLG
Sbjct: 376 GGKSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 415

[Close]
BLAST of Cp4.1LG17g07750 vs. NCBI nr
Match: gi|719963529|ref|XP_010249997.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 667.9 bits (1722), Expect = 1.1e-188
Identity = 323/363 (88.98%), Postives = 346/363 (95.32%), Query Frame = 1 

Query: 41  KASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLD 100
           +AS+   S+NRR+F+AET AAVSLSL+PL   V+PAKSEE LS+W R+YLPIDPGVVLLD
Sbjct: 40  RASLHQPSMNRRQFIAET-AAVSLSLAPLSGFVEPAKSEEALSEWERVYLPIDPGVVLLD 99

Query: 101 IAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIV 160
           IAFVPD LNHGFLLGTRQTILETKDGG TW PRSIPSAE+EDFNYRFNSISF+ KEGWIV
Sbjct: 100 IAFVPDQLNHGFLLGTRQTILETKDGGNTWVPRSIPSAEDEDFNYRFNSISFRAKEGWIV 159

Query: 161 GKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWK 220
           GKPAILLYTSDAGESWERIPLSAQLPGD+VYIKATGE SAEMVTD+GAIYVTSN+GYNW+
Sbjct: 160 GKPAILLYTSDAGESWERIPLSAQLPGDIVYIKATGENSAEMVTDQGAIYVTSNRGYNWR 219

Query: 221 AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFW 280
           AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQP+W
Sbjct: 220 AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGNYVAVSSRGNFYLTWEPGQPYW 279

Query: 281 QPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGY 340
           QPHNRA+ARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI+E+F+EVPVQSRGFGILDVGY
Sbjct: 280 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFDEVPVQSRGFGILDVGY 339

Query: 341 RSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQ 400
           RSK+EAWAAGGSGVLL+TTNGGKTW RDKAADNIAANLYSVKFIND KGFVLGNDGVLL+
Sbjct: 340 RSKDEAWAAGGSGVLLRTTNGGKTWIRDKAADNIAANLYSVKFINDNKGFVLGNDGVLLR 399

Query: 401 YLG 404
           YLG
Sbjct: 400 YLG 401

[Close]
BLAST of Cp4.1LG17g07750 vs. NCBI nr
Match: gi|823159965|ref|XP_012479823.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Gossypium raimondii])

HSP 1 Score: 665.6 bits (1716), Expect = 5.4e-188
Identity = 335/401 (83.54%), Postives = 360/401 (89.78%), Query Frame = 1 

Query: 8   LRPSCFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSS-----INRREFVAETAAAV 67
           L PS  +   PR     LS P  +  +  S+   +S  +SS     +NRR+ +++TA+ +
Sbjct: 16  LIPSLTSLFPPRLLHRPLSLPHSRFISKASLHHPSSPSSSSSPPSLVNRRQIISQTAS-I 75

Query: 68  SLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 127
           SLSL+ L +   PAKSEE LS+W R+YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE
Sbjct: 76  SLSLATLSSLPLPAKSEEVLSEWERVYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 135

Query: 128 TKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLS 187
           TKDGG TW  RSIPSAE+EDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGESWERIPLS
Sbjct: 136 TKDGGNTWTQRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLS 195

Query: 188 AQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGA 247
           AQLPGDMVYIKATGEKSAEMVTD+GAIYVTSN+GYNW+AAVQETVSATLNRTVSSGISGA
Sbjct: 196 AQLPGDMVYIKATGEKSAEMVTDQGAIYVTSNRGYNWRAAVQETVSATLNRTVSSGISGA 255

Query: 248 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 307
           SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL
Sbjct: 256 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 315

Query: 308 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG 367
           WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRS+EEAWAAGGSGVLL+TTNGG
Sbjct: 316 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGVLLRTTNGG 375

Query: 368 KTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           K WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLL+YLG
Sbjct: 376 KNWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLRYLG 415

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g07750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
P2SAF_ARATH1.3e-17877.81Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis th... [more]
P2SAF_ORYSJ1.6e-17677.33Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa s... [more]
P2SAF_GUITH1.3e-9646.41Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia the... [more]
YC48L_SYNY39.9e-8148.74Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr2034 PE... [more]
YC48L_THEEB1.1e-7943.73Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=... [more]
BLAST of Cp4.1LG17g07750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5Y1_CUCSA1.8e-21492.91Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420730 PE=4 SV=1[more]
W9R3A0_9ROSA9.0e-19083.37Uncharacterized protein OS=Morus notabilis GN=L484_018094 PE=4 SV=1[more]
A0A0D2SL22_GOSRA3.8e-18883.54Uncharacterized protein OS=Gossypium raimondii GN=B456_005G210500 PE=4 SV=1[more]
A0A061E463_THECC1.9e-18782.54Photosystem II stability/assembly factor, chloroplast (HCF136) isoform 1 OS=Theo... [more]
D7T9G8_VITVI7.9e-18686.96Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02150 PE=4 SV=... [more]
BLAST of Cp4.1LG17g07750 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23120.17.5e-18077.81 photosystem II stability/assembly factor, chloroplast (HCF136)[more]
BLAST of Cp4.1LG17g07750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122869|ref|XP_008461367.1|8.9e-21592.65PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucum... [more]
gi|449436353|ref|XP_004135957.1|2.6e-21492.91PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucum... [more]
gi|703090427|ref|XP_010094078.1|1.3e-18983.37hypothetical protein L484_018094 [Morus notabilis][more]
gi|719963529|ref|XP_010249997.1|1.1e-18888.98PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nelum... [more]
gi|823159965|ref|XP_012479823.1|5.4e-18883.54PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Gossy... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028203PSII_CF48-like_dom
IPR016705Ycf48/Hcf136
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009735 response to cytokinin
biological_process GO:0008150 biological_process
biological_process GO:0006412 translation
biological_process GO:0042793 transcription from plastid promoter
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0006364 rRNA processing
biological_process GO:0009637 response to blue light
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009902 chloroplast relocation
biological_process GO:0035304 regulation of protein dephosphorylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009533 chloroplast stromal thylakoid
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g07750.1Cp4.1LG17g07750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016705Photosynthesis system II assembly factor Ycf48/Hcf136PIRPIRSF017875Photosystem_II_Ycf48-likecoord: 45..403
score: 7.5E
IPR028203Photosynthesis system II assembly factor Ycf48/Hcf136-like domainPFAMPF14870PSII_BNRcoord: 80..401
score: 8.9E
NoneNo IPR availableGENE3DG3DSA:2.130.10.140coord: 77..229
score: 2.8E-20coord: 289..395
score: 2.8
NoneNo IPR availablePANTHERPTHR32010FAMILY NOT NAMEDcoord: 26..403
score: 1.9E
NoneNo IPR availablePANTHERPTHR32010:SF6PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTICcoord: 26..403
score: 1.9E
NoneNo IPR availableunknownSSF110296Oligoxyloglucan reducing end-specific cellobiohydrolasecoord: 90..402
score: 1.14

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g07750Cucsa.128310Cucumber (Gy14) v1cgycpeB0335
Cp4.1LG17g07750CmaCh17G009900Cucurbita maxima (Rimu)cmacpeB376
Cp4.1LG17g07750CmaCh08G005010Cucurbita maxima (Rimu)cmacpeB917
Cp4.1LG17g07750CmoCh08G004940Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g07750CmoCh17G009620Cucurbita moschata (Rifu)cmocpeB339
Cp4.1LG17g07750Cla015198Watermelon (97103) v1cpewmB311
Cp4.1LG17g07750Csa7G420730Cucumber (Chinese Long) v2cpecuB343
Cp4.1LG17g07750MELO3C023596Melon (DHL92) v3.5.1cpemeB299
Cp4.1LG17g07750ClCG09G004540Watermelon (Charleston Gray)cpewcgB280
Cp4.1LG17g07750CSPI07G18770Wild cucumber (PI 183967)cpecpiB344
Cp4.1LG17g07750Lsi02G025310Bottle gourd (USVL1VR-Ls)cpelsiB262
Cp4.1LG17g07750MELO3C023596.2Melon (DHL92) v3.6.1cpemedB347
Cp4.1LG17g07750CsaV3_7G030600Cucumber (Chinese Long) v3cpecucB0422
Cp4.1LG17g07750Bhi09G000606Wax gourdcpewgoB0414
Cp4.1LG17g07750CsGy7G017210Cucumber (Gy14) v2cgybcpeB931
Cp4.1LG17g07750Carg13414Silver-seed gourdcarcpeB0632
Cp4.1LG17g07750Carg07081Silver-seed gourdcarcpeB0161
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g07750Cp4.1LG12g06360Cucurbita pepo (Zucchini)cpecpeB157
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g07750Silver-seed gourdcarcpeB1071
Cp4.1LG17g07750Silver-seed gourdcarcpeB1145
Cp4.1LG17g07750Cucumber (Chinese Long) v3cpecucB0387
Cp4.1LG17g07750Wax gourdcpewgoB0377
Cp4.1LG17g07750Cucurbita pepo (Zucchini)cpecpeB332
Cp4.1LG17g07750Cucurbita pepo (Zucchini)cpecpeB336
Cp4.1LG17g07750Cucurbita maxima (Rimu)cmacpeB269
Cp4.1LG17g07750Cucurbita maxima (Rimu)cmacpeB472
Cp4.1LG17g07750Cucurbita moschata (Rifu)cmocpeB232
Cp4.1LG17g07750Cucurbita moschata (Rifu)cmocpeB430
Cp4.1LG17g07750Bottle gourd (USVL1VR-Ls)cpelsiB266
Cp4.1LG17g07750Watermelon (Charleston Gray)cpewcgB290
Cp4.1LG17g07750Watermelon (97103) v1cpewmB322
Cp4.1LG17g07750Melon (DHL92) v3.5.1cpemeB308
Cp4.1LG17g07750Cucumber (Gy14) v2cgybcpeB356
Cp4.1LG17g07750Melon (DHL92) v3.6.1cpemedB360