Cp4.1LG12g06360 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g06360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionYcf48-like protein
LocationCp4.1LG12 : 7525816 .. 7530686 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTGAGAGAAATTGTTTTGGATAACGTGAGAGATAAGAGGTCGGCCAACTCTTCTCTGCTCCTTTCCTTTTCTCTACAATGGCGACTCTGCAACAACTCCTCAAACCTTCATGGTCCTCCTCTCTCTTTGCTTCCTCCTCTCCACGCCATTCCCTCTCTTCAACCACTCCCAAAGCCTCTCTTCAGAATTCTTCCGTCAATCGCCGCCAGTTTGTTGCTGAGACGGCGGCCACGGTCTCTCTGTCGCTTTCTCCGTTTATTGCCCCCGTACCACCGGCGAAGTCTGAAGAATCTCTATCGGAGTGGGAGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGATGATTTGGACCGTGGTTAGTTTCGATTGCTTTGGTTTTCTTTTTCCTGATTGTTCATTGATTAAGAAATGCACGAGAATTTTGTATTTGTTTTTCTTTTTCTCCGATTTTTTCGAGTCGCAATTTGGGAGCTCACTGCTCATTGTAATTAATTGTTGGAAACATCTGGAGTTTATGAGCATTTGTACATTGAACAGTTATTAGAACGTTTAATTGTCTGTTGTATTGTCGTCTCTTAGGACTTGAACTCTATTATAGTTAAGTTAAGCTGGTCTTGTGAAGCTTTCCAATTATTTTTATATCAGTTTCTTCATCAAGAATTTTTTTGGGGGTAGCGAGTTGGGGATTTGGTGACTACTTGAATTTGTGGAAAGAAATTTCTGATGTTCATTTTTTGTTCATATGTTCTTATCTACATTTCTGATGTTCATTTTTTGTTCATATGTTCTTATCTACATTGTTGGGGATTACGGATTTTGTAAAGGCTCCTGACTGTTGTAATTTGTAATTTCTCGTTCGCCAATAATATGCCATGAAATCATTTGACACTTACAGACCAATGCAGGCTTCCTTTTGGGGACTAGGCAAACCATTTTAGAGACGAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGGTTTAATGCTATTAGCTTCAAAGGAAAGGAAGGATGGATTGTTGGCAAGCCTGCAATTCTGTTGTACACTTCGGATGCAGGAGAAAGTTGGGAAAGGATACCTCTTAGCGCTCAGCTTCCTGGAGATATGGTAAATTACTATTTCATTATGACCATGCTTGAATTTTAGTTTGTTCTATTTTTAGACTTTCCTCAAATGCTTGGTCGGTTGAATGATACGCTTTAGCCTTTTCTTTAGCAATTGTAGTTATAATGCTCATTTCATGTCGCTAAGTAAGTTAAGACAATAGGAGAAGGAACCTATTATTCACAACAATAAAAAAATGAGTTGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCATAACCGACGTGTTTTAAAACCTTTAGGGGAAGCCTAGAAGGAAAAACCCAGGACAATATTTGCTAGCTGTAGGCTTGAGCTGTGACATGTGCTCGTTACAGATTAAGATGGAAATTTTGATTGTTTTAAGTATATCTATAGGTATAAATTAATCTGTTCGTTTCTGCCAGAAAGTGCTTATATTAAACTCTAAAGTGGGTAATTCTACTATAAAACCTTCAGGTCTACATTAAAGCAACTGGAGACAAAAGTGCAGAGATGGTTACTGATGAAGGTGCAATTTATGTTACATCAAACAAGGGTTATAACTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGGTGAGTTTCGGCAGGAGAGAATTTTCTATTCTATTAGTGTTTAAGACAAAAGCCTCGTTTAGAATTTAACCTTGAAATCATCATGGAATAATTCATAGGCTGATAACTGATAAGATTTTACTGGCTGCTTGTGACAGGGAATCATTTGGGCCACAGTTCACTAGTTTAGCTCATTAAAAGGAAAAATTCAATCCCTATTATGGAATGCTAATATGGTTTCTTTACCTTTTTCAGAACCGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACTGTCAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTATCTCACCTGGGAGCCTGGGCAGGTTTAACTTCTGTATTTCTTTTACTCTTTGTCTCTCTACTTCTAAGTGTATTGCTTTCAACTGGTTGTGAAGGCAGTTTGCTCCTGCTAAATAAACTGTTGAGTGATGAGTTTCTTGTGGGGCTTAATCGCCATATTTGTACGACTTAAAAACTTGGTTTTGTTTGCAATGCCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAGAATATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGGGTAAGTAAAGTTGAGGACCGTTTATTTGCGTTTCTAGTCCAGCCACCCTAATGGAAAATATGAAGAATGGTTTAGAGTTGCAATGTGGTTTGATTTTAACCTTTAGGAAGAATCTTTTCCTTTTTCTCCTACTAGTTACTCAAGCATTGAATATTTTATATGAGGTTAGAGCTTTAGGCTTTTGGTTGCATAATAACTCAATAGTGGAATCCTATAAACACGATGCTTTTTAGATATGCTTTTATTAGAAACTTTTCTTGGATGAAAACATAGTGATTGAACAGCACTAATTTTTCTTCATATTCATGATTTTCTTGAAAATAGAGTGACAAGTAAGTTCTAGACTGTCATTGTATAGGATATATCTACACTGTTACTTCCCAGAATTTCAGCTAGACCTCTCAGCCAACTCATGTTATATATTATCTGCTTGTTGAAGTCAATATGTTTAATATAACAGATCAGTGAGGAGTTTGAAGAAGTTCCAGTTCAAAGCCGAGGTTTTGGCATATTAGATGTTGGTTTTCGTTCACAGGTATTCTTTTAAGATCATTGACATGCCTATACTTTTGTGCGTCTGCATTCATACTCGAAGACTTCTGCTAATATTGTGATTAAGATAGAAATATGAAATTTCTTTGTTGTAAATTGCTAAAATTGACCTTCTTGGAGGCTGAACTTAATGAATTTCGTTGATTTGCATAAACAATTACATAAGGGAAGGGCCAGACAGAAGCCTCAATATGATTATCTAGTTTTTGATTACACGTGCTGTACAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAGGACATGGACCCGTGATAAAGCAGCTGACAATATTGCAGCCAACCTTTACTCTGTAAAGTGAGTATGATCATACTATAAACTTGAGTTTGTTTTACAATTTTTGAAATTTGAAACTACCTCCTATTCATAGATCATCCCTTTATGAATTCTCTTTCTATGGCTGTCTCTCTCTGATTGATGAATAAAGTGTAAGAAGAAGAACCATTGTAATAGTCTAAGCTCACTGCACGCCCACTGCTAGCAGATATTGTCCGCTTTAGCCCGTTACATATCGCCGTCAACCTCAAGGTTTTAAAACGCGTCTATTAGGTAGATGTTTCCACACTCTTATAAGAAGTGTTTTATTCCCCTCTCCAACCGACGTGGGATCTCACAATCTACCCCTTTGGAGATCCAGCGTTCACAATATCTGCTAGCGGTGGGCTTGGTCTATCAGATCTATACCTTGCTTCTTCTTTAGGGTCTTTCGGGGTGAGTTTGGGATCAATTTTGGGAGGGGAAAAATGTTCTTAACATGTTAAAAGCACTTTTCAGAAACTTTATAGTGCTTAGTACATACTTGAAAACAATATTAATTTTTTTAGAACACTTGAAGTGCTTTCTCACACTTGGCATTAGAATAATATCAAGTTGTGTTGCCAAGAAAAGCCTAACTCTTCCGATCAGGCTGCAAATACAATGCAATTGTACTATAATTTTGCCAAAGAAATTTAGGGCGATGAGTTTAGTAGTGAGCATGAATTCTGTACTTTCGATTTACCTTCACAAATTTTCGATTTTAATCTATTTACATCTCCGCAGGTTTATAAACGATAAGAAAGGATTTGTGCTCGGAAATGACGGGGTGTTACTTCAATATCTTGGTTGAAGCTTGAGATTTTACTCGGTAATTAGTACATATCCCCCTTTTCCTGCTTCTCTTTGAATTTTCTTTATGATAGCCTCTTAGCCACTTGGTGTCACTGTTTAATTCTCCTACTTGGAAAAAGAAGAAAAATTATTGGCCATAATCAATTGAAATTTGGAGCACAGTGTTAAAATGTTCATTGTAGTTGTGATGTGGATCTGTTTGATTATGTTTTCTATTTTCTAATATTTTTGCTTTCATTTTGAAAACACTCCTAAACTTTTGACAACAAAACAGAAAGGTGGGAGTAATATTTATAGGGTTAACTTCAAAACCAAATGATTATCAAACGGTGCCTAAACTTTTCGACATTATTCTTACTCAGGTTACAGAATCAGATTCTATATGATGCTTGCGATCGAAATTTTGTATCACTAAATCATAGCTGCATTCTTGCTTTGGGTGATGGGATGAGGTACTAATGCTACCGAGTTTCGTATCTTTCCTTGTTTTTTGCATTTCTGAAGACGCTTTCATTCGAAAGAGTCAATTTCGTATATAGTTTTCATTCTTGTTAATATTTGTAATTTAAATGTATACTTGTTCATATGCCCATTCAACAATGATGAATTTGGAAGTTGTAGATGTTTTTTGTCTTTGATTTTTATAGAACATTACTGTACATTTCAATTCCCCAATTATAACAATGATATAAATTTAGATTTGGGGATTCCTTTGCATTTGCTCTT

mRNA sequence

CGTTGAGAGAAATTGTTTTGGATAACGTGAGAGATAAGAGGTCGGCCAACTCTTCTCTGCTCCTTTCCTTTTCTCTACAATGGCGACTCTGCAACAACTCCTCAAACCTTCATGGTCCTCCTCTCTCTTTGCTTCCTCCTCTCCACGCCATTCCCTCTCTTCAACCACTCCCAAAGCCTCTCTTCAGAATTCTTCCGTCAATCGCCGCCAGTTTGTTGCTGAGACGGCGGCCACGGTCTCTCTGTCGCTTTCTCCGTTTATTGCCCCCGTACCACCGGCGAAGTCTGAAGAATCTCTATCGGAGTGGGAGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGATGATTTGGACCGTGGCTTCCTTTTGGGGACTAGGCAAACCATTTTAGAGACGAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGGTTTAATGCTATTAGCTTCAAAGGAAAGGAAGGATGGATTGTTGGCAAGCCTGCAATTCTGTTGTACACTTCGGATGCAGGAGAAAGTTGGGAAAGGATACCTCTTAGCGCTCAGCTTCCTGGAGATATGGTCTACATTAAAGCAACTGGAGACAAAAGTGCAGAGATGGTTACTGATGAAGGTGCAATTTATGTTACATCAAACAAGGGTTATAACTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACCGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACTGTCAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTATCTCACCTGGGAGCCTGGGCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAGAATATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGGATCAGTGAGGAGTTTGAAGAAGTTCCAGTTCAAAGCCGAGGTTTTGGCATATTAGATGTTGGTTTTCGTTCACAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAGGACATGGACCCGTGATAAAGCAGCTGACAATATTGCAGCCAACCTTTACTCTGTAAAGTTTATAAACGATAAGAAAGGATTTGTGCTCGGAAATGACGGGGTGTTACTTCAATATCTTGGTTGAAGCTTGAGATTTTACTCGGTTACAGAATCAGATTCTATATGATGCTTGCGATCGAAATTTTGTATCACTAAATCATAGCTGCATTCTTGCTTTGGGTGATGGGATGAGGTACTAATGCTACCGAGTTTCGTATCTTTCCTTGTTTTTTGCATTTCTGAAGACGCTTTCATTCGAAAGAGTCAATTTCGTATATAGTTTTCATTCTTGTTAATATTTGTAATTTAAATGTATACTTGTTCATATGCCCATTCAACAATGATGAATTTGGAAGTTGTAGATGTTTTTTGTCTTTGATTTTTATAGAACATTACTGTACATTTCAATTCCCCAATTATAACAATGATATAAATTTAGATTTGGGGATTCCTTTGCATTTGCTCTT

Coding sequence (CDS)

ATGGCGACTCTGCAACAACTCCTCAAACCTTCATGGTCCTCCTCTCTCTTTGCTTCCTCCTCTCCACGCCATTCCCTCTCTTCAACCACTCCCAAAGCCTCTCTTCAGAATTCTTCCGTCAATCGCCGCCAGTTTGTTGCTGAGACGGCGGCCACGGTCTCTCTGTCGCTTTCTCCGTTTATTGCCCCCGTACCACCGGCGAAGTCTGAAGAATCTCTATCGGAGTGGGAGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGATGATTTGGACCGTGGCTTCCTTTTGGGGACTAGGCAAACCATTTTAGAGACGAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGGTTTAATGCTATTAGCTTCAAAGGAAAGGAAGGATGGATTGTTGGCAAGCCTGCAATTCTGTTGTACACTTCGGATGCAGGAGAAAGTTGGGAAAGGATACCTCTTAGCGCTCAGCTTCCTGGAGATATGGTCTACATTAAAGCAACTGGAGACAAAAGTGCAGAGATGGTTACTGATGAAGGTGCAATTTATGTTACATCAAACAAGGGTTATAACTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACCGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACTGTCAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTATCTCACCTGGGAGCCTGGGCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAGAATATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGGATCAGTGAGGAGTTTGAAGAAGTTCCAGTTCAAAGCCGAGGTTTTGGCATATTAGATGTTGGTTTTCGTTCACAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAGGACATGGACCCGTGATAAAGCAGCTGACAATATTGCAGCCAACCTTTACTCTGTAAAGTTTATAAACGATAAGAAAGGATTTGTGCTCGGAAATGACGGGGTGTTACTTCAATATCTTGGTTGA

Protein sequence

MATLQQLLKPSWSSSLFASSSPRHSLSSTTPKASLQNSSVNRRQFVAETAATVSLSLSPFIAPVPPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Homology
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BLAST of Cp4.1LG12g06360 vs. Swiss-Prot
Match: P2SAF_ARATH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1)

HSP 1 Score: 630.6 bits (1625), Expect = 1.2e-179
Identity = 307/377 (81.43%), Postives = 349/377 (92.57%), Query Frame = 1 

Query: 18  ASSSPRHSLSSTTPKASLQNSSVNRRQFVAETAATVSLSLSPFIAPVPPAKSEESLSEWE 77
           ASSSP  S S ++  +SL   S +RR+ + ++AA VSLSLS  + P   A+++E LSEWE
Sbjct: 34  ASSSPPPSPSPSSSSSSL---SFSRRELLYQSAA-VSLSLSSIVGP---ARADEQLSEWE 93

Query: 78  RLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYR 137
           R++LPIDPGVVLLDIAFVPD+  RGFLLGTRQT+LETKDGG TW PRSIPSAEEEDFNYR
Sbjct: 94  RVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYR 153

Query: 138 FNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGDKSAEMVTDE 197
           FN+ISFKGKEGWI+GKPAILLYT+DAGE+W+RIPLS+QLPGDMV+IKAT DKSAEMVTDE
Sbjct: 154 FNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDE 213

Query: 198 GAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSR 257
           GAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ VNRSPDGRYVAVSSR
Sbjct: 214 GAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSAVNRSPDGRYVAVSSR 273

Query: 258 GNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEV 317
           GNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL+LSKGTGI+EEFEEV
Sbjct: 274 GNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEV 333

Query: 318 PVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKFIND 377
           PVQSRGFGILDVG+RS+EEAWAAGGSG+LL+T NGG++W RDKAADNIAANLY+VKF++D
Sbjct: 334 PVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDD 393

Query: 378 KKGFVLGNDGVLLQYLG 395
           KKGFVLGNDGVLL+Y+G
Sbjct: 394 KKGFVLGNDGVLLRYVG 403

[Close]
BLAST of Cp4.1LG12g06360 vs. Swiss-Prot
Match: P2SAF_ORYSJ (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1)

HSP 1 Score: 611.7 bits (1576), Expect = 5.7e-174
Identity = 304/401 (75.81%), Postives = 338/401 (84.29%), Query Frame = 1 

Query: 20  SSPRHSLSSTTPKASLQNSSVNRRQFVAETA-ATVSLSLSPFIAPVPP---AKSEESLSE 79
           SS R       P+A   + S  RR+F+A+TA A+ + ++ P + P  P   A    SLSE
Sbjct: 16  SSSRRRCRLLVPRAHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQPPSLSE 75

Query: 80  WERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFN 139
           WER+ LPIDPGVVLLDIAFVPDD   GFLLGTRQTILETK+GG TW PRSIPSAE+EDFN
Sbjct: 76  WERVLLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDEDFN 135

Query: 140 YRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGDKSAEMVT 199
           YRFN++SF GKEGWI+GKPAILL+TSDAG+SWERIPLSAQLPG+MVYIKATG++SAEMVT
Sbjct: 136 YRFNSVSFMGKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQSAEMVT 195

Query: 200 DEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVS 259
           DEGAIYVTSN+GYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVS
Sbjct: 196 DEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVS 255

Query: 260 SRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTG------ 319
           SRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADGGLWLLVRGGGLFLSKG+G      
Sbjct: 256 SRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGFQFFYR 315

Query: 320 ----------------ISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGG 379
                           I+E+FEE  VQSRGFGILDVG+RS++EAWAAGGSGVLLKTTNGG
Sbjct: 316 GLNDAHAISYLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGG 375

Query: 380 RTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 395
           +TW RDKAADNIAANLYSVKF+ D KG+VLGNDGVLL+Y+G
Sbjct: 376 KTWVRDKAADNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416

[Close]
BLAST of Cp4.1LG12g06360 vs. Swiss-Prot
Match: P2SAF_GUITH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia theta GN=hcf136 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 7.6e-94
Identity = 165/362 (45.58%), Postives = 243/362 (67.13%), Query Frame = 1 

Query: 40  VNRRQFVAETAATVSLSLSPFIAPVPPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDL 99
           +NR +F+       +  L P +  + P  +  + + W ++ LP+D   VL DI F   + 
Sbjct: 42  INRTKFI-------NYLLYPTLTSLYPKFTHANTTSWTKVDLPVDS--VLFDIEFTDPEC 101

Query: 100 DRGFLLGTRQTILETKDGGRTWAPRSIPSAE-EEDFNYRFNAISFKGKEGWIVGKPAILL 159
             G+L+G++ T LET DGG TW PR+  + + +E+  YRF  ISF+G+EGW++GKPAI+L
Sbjct: 102 KHGWLVGSKGTFLETDDGGNTWVPRTFANLDPDEELTYRFENISFEGQEGWVIGKPAIIL 161

Query: 160 YTSDAGESWERIPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNKGYNWKAAVQETV 219
           YT D G++W R+P+S +LPG+   IKA G +SAE+ T  GAIYVT+N G NWKA V+ET+
Sbjct: 162 YTKDGGKTWFRVPVSPKLPGEPCLIKALGSESAELTTTSGAIYVTNNAGRNWKAQVKETI 221

Query: 220 SATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAI 279
            +TLNRT+SSG+SGASY+TG    V R+ +G+Y+A+SSRGNFYLTWEPGQ FW P  R  
Sbjct: 222 DSTLNRTISSGVSGASYFTGNVINVIRNSEGKYLAISSRGNFYLTWEPGQDFWIPRARET 281

Query: 280 ARRIQNMGWRADG---GLWLLVRGGGLFLSKGT----GISE-EFEEVPVQSRGFGILDVG 339
           +RRIQ+MG+  +    G+W+  RGGGL +S        IS   FE + +++ G+GILD  
Sbjct: 282 SRRIQSMGFIQNDNQKGIWMSTRGGGLSVSTKNFDFESISSFNFENIDIKTGGYGILDAA 341

Query: 340 FRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLL 393
           F + ++ W   G G++  +T+ G+ WT+    D ++ NLY +KF+N+ KGF+LG++G+LL
Sbjct: 342 FVNDKDIWIICGGGIVYNSTDKGKNWTKVDGIDKLSGNLYKIKFVNNNKGFILGSNGLLL 394

[Close]
BLAST of Cp4.1LG12g06360 vs. Swiss-Prot
Match: YC48L_SYNY3 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr2034 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.6e-80
Identity = 155/322 (48.14%), Postives = 203/322 (63.04%), Query Frame = 1 

Query: 72  SLSEWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQTILETKDGGRTWAPRSIPSAEE 131
           + + W+ + L  D      DIAF  +D + G+L+GT++TI ET DGG TW  + I   EE
Sbjct: 36  AFNPWQEIALETDS--TFADIAFT-EDPNHGWLVGTKETIFETTDGGDTWEQKLIDLGEE 95

Query: 132 EDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGDKSA 191
           +     F+A+SF G EGWI GKP+ILL+T+D G++W RIPLS +LPG    I A G ++A
Sbjct: 96  K---ASFSAVSFSGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPGAPYSIIALGPQTA 155

Query: 192 EMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRY 251
           EM+TD GAIY T+N G NWKA V+  V                   G   T+ RS DGRY
Sbjct: 156 EMITDLGAIYKTTNGGKNWKALVEGAV-------------------GVARTIQRSTDGRY 215

Query: 252 VAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIS 311
           VAVS+RGNFY TW PGQ  W PHNR  +RR+Q MG+  DG LWLL RGG L  S      
Sbjct: 216 VAVSARGNFYSTWAPGQTEWTPHNRNSSRRLQTMGYGKDGQLWLLARGGQLQFSTDPDAE 275

Query: 312 EEFEEVPVQSRG-FGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLY 371
           E  + +  Q +G +G+LD+ FR+ EE W AG SG LL + +GG+TW +D   ++I ANLY
Sbjct: 276 EWSDVIAPQDKGSWGLLDLSFRTPEEVWVAGASGNLLMSQDGGQTWAKDTGVEDIPANLY 332

Query: 372 SVKFINDKKGFVLGNDGVLLQY 393
            V F++ +KGFVLG DG+LL+Y
Sbjct: 336 RVVFLSPEKGFVLGQDGILLKY 332

[Close]
BLAST of Cp4.1LG12g06360 vs. Swiss-Prot
Match: P2SAF_CYAPA (Photosystem II stability/assembly factor HCF136 OS=Cyanophora paradoxa GN=hcf136 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 2.4e-79
Identity = 151/324 (46.60%), Postives = 196/324 (60.49%), Query Frame = 1 

Query: 75  EWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDF 134
           +WE++  P++   +LLDI FVPD   RG+LLGTR T+ ET D G+TW  RS+     ED 
Sbjct: 32  KWEQI--PLNTDEILLDIGFVPDQPQRGWLLGTRSTLFETTDKGKTWELRSL---NLEDD 91

Query: 135 NYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGDKSAEMV 194
            YR N+ISF GKEGW+ GKPAILL+T+D G SW RIPLS QLPGD   I A G   AE+ 
Sbjct: 92  KYRLNSISFSGKEGWVTGKPAILLHTTDGGSSWSRIPLSNQLPGDPALITALGTGKAELA 151

Query: 195 TDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAV 254
           TD GAIY T N G  WKA +QE +                   G   TV RS +G YVAV
Sbjct: 152 TDIGAIYRTENSGQTWKAQIQEPL-------------------GVIRTVARSENGSYVAV 211

Query: 255 SSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEF 314
           S++GNFY TW+ G   W  H R  +RRIQ+MG+  +  LW+L RGG L+ S      E  
Sbjct: 212 SAKGNFYSTWKEGDDKWISHPRQSSRRIQSMGFTNNNRLWMLTRGGQLWFSSNDSFDEPN 271

Query: 315 EEVPVQSR-----GFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANL 374
            E P         G G+L++ F++  E W +GGSG+LL + + G TW ++ + DNI +N 
Sbjct: 272 WEGPKTPEGKVGFGLGLLNLAFKTPTEIWVSGGSGILLSSQDTGNTWKKETSTDNIPSNF 331

Query: 375 YSVKFINDKKGFVLGNDGVLLQYL 394
           Y + FI+ + GFVLGN G LL+Y+
Sbjct: 332 YKISFIDKEVGFVLGNQGTLLRYV 331

[Close]
BLAST of Cp4.1LG12g06360 vs. TrEMBL
Match: A0A0A0K5Y1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420730 PE=4 SV=1)

HSP 1 Score: 749.2 bits (1933), Expect = 2.5e-213
Identity = 379/406 (93.35%), Postives = 389/406 (95.81%), Query Frame = 1 

Query: 1   MATLQQ-LLKPSWSSSLFASS-SPRHSLS----------STTPKASLQNSSVNRRQFVAE 60
           MATLQQ LLKPSW+SSLFASS SPRHSLS          STTPKASL NSS+NRR FVA+
Sbjct: 1   MATLQQQLLKPSWTSSLFASSTSPRHSLSQPQLLPRTLSSTTPKASLHNSSINRRHFVAD 60

Query: 61  TAATVSLSLSPFIAPVPPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTR 120
           TAA VSLSLSPFIAPV PAKSEESLSEWERLYLPIDPGVVLLDIAFVPDD++ GFLLGTR
Sbjct: 61  TAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMNHGFLLGTR 120

Query: 121 QTILETKDGGRTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWE 180
           QTILETKDGGRTWAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTSDAGESWE
Sbjct: 121 QTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWE 180

Query: 181 RIPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSS 240
           RIPLSAQLPGDMVYIKATG+KSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSS
Sbjct: 181 RIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSS 240

Query: 241 GISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWR 300
           GISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWR
Sbjct: 241 GISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWR 300

Query: 301 ADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLK 360
           ADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVG+RS+EEAWAAGGSGVLLK
Sbjct: 301 ADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLK 360

Query: 361 TTNGGRTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 395
           TTNGGR+WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Sbjct: 361 TTNGGRSWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 406

[Close]
BLAST of Cp4.1LG12g06360 vs. TrEMBL
Match: W9R3A0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018094 PE=4 SV=1)

HSP 1 Score: 666.8 bits (1719), Expect = 1.7e-188
Identity = 338/401 (84.29%), Postives = 366/401 (91.27%), Query Frame = 1 

Query: 7   LLKPSWSSSLFASS-SPRHSLSSTTP-----KASLQNSSVN------RRQFVAETAATVS 66
           LLKPS++S  F ++ SPRH  SS  P     KAS  +SS +      RR+F+AETAA VS
Sbjct: 16  LLKPSFTSLFFNNTTSPRHFRSSQPPPRFIPKASSSSSSSSSSSLLCRRRFIAETAA-VS 75

Query: 67  LSL-SPFIAPVPPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQTILE 126
           LSL SPF+ PV PAKSE++LSEWER YLPIDPGVVLLDIAFVPDDL+ GFLLGTRQTILE
Sbjct: 76  LSLASPFLGPVQPAKSEDALSEWERCYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 135

Query: 127 TKDGGRTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLS 186
           TKDGG TW PRSIPSAE+EDFNYRFN+ISF GKEGWIVGKPAILLYTSDAGE+WERI LS
Sbjct: 136 TKDGGNTWVPRSIPSAEDEDFNYRFNSISFIGKEGWIVGKPAILLYTSDAGENWERIALS 195

Query: 187 AQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGA 246
           AQLPGDMVYIKATG+K AEMVTD+GAIYVTSNKGYNW+AAVQETVSATLNRTVSSGISGA
Sbjct: 196 AQLPGDMVYIKATGEKGAEMVTDQGAIYVTSNKGYNWRAAVQETVSATLNRTVSSGISGA 255

Query: 247 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 306
           SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADGGL
Sbjct: 256 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGL 315

Query: 307 WLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGG 366
           WLLVRGGGLFLSKGTGI+E+FEEV VQSRGFGILDVG+RSQEEAWAAGGSG+LL+TTNGG
Sbjct: 316 WLLVRGGGLFLSKGTGITEDFEEVAVQSRGFGILDVGYRSQEEAWAAGGSGILLRTTNGG 375

Query: 367 RTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 395
           ++W RDKAADNIAANLYSVKFI+DKKGFVLGNDGVLL+YLG
Sbjct: 376 KSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 415

[Close]
BLAST of Cp4.1LG12g06360 vs. TrEMBL
Match: A0A0D2SL22_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G210500 PE=4 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 2.7e-186
Identity = 328/380 (86.32%), Postives = 352/380 (92.63%), Query Frame = 1 

Query: 15  SLFASSSPRHSLSSTTPKASLQNSSVNRRQFVAETAATVSLSLSPFIAPVPPAKSEESLS 74
           S F S +  H  SS +  +S   S VNRRQ +++TA+ +SLSL+   +   PAKSEE LS
Sbjct: 38  SRFISKASLHHPSSPSSSSS-PPSLVNRRQIISQTAS-ISLSLATLSSLPLPAKSEEVLS 97

Query: 75  EWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDF 134
           EWER+YLPIDPGVVLLDIAFVPDDL+ GFLLGTRQTILETKDGG TW  RSIPSAE+EDF
Sbjct: 98  EWERVYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGNTWTQRSIPSAEDEDF 157

Query: 135 NYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGDKSAEMV 194
           NYRFN+ISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATG+KSAEMV
Sbjct: 158 NYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMV 217

Query: 195 TDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAV 254
           TD+GAIYVTSN+GYNW+AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAV
Sbjct: 218 TDQGAIYVTSNRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAV 277

Query: 255 SSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEF 314
           SSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISE+F
Sbjct: 278 SSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDF 337

Query: 315 EEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKF 374
           EEVPVQSRGFGILDVG+RS+EEAWAAGGSGVLL+TTNGG+ WTRDKAADNIAANLYSVKF
Sbjct: 338 EEVPVQSRGFGILDVGYRSEEEAWAAGGSGVLLRTTNGGKNWTRDKAADNIAANLYSVKF 397

Query: 375 INDKKGFVLGNDGVLLQYLG 395
           INDKKGFVLGNDGVLL+YLG
Sbjct: 398 INDKKGFVLGNDGVLLRYLG 415

[Close]
BLAST of Cp4.1LG12g06360 vs. TrEMBL
Match: V4TGT7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031672mg PE=4 SV=1)

HSP 1 Score: 651.4 bits (1679), Expect = 7.2e-184
Identity = 328/405 (80.99%), Postives = 362/405 (89.38%), Query Frame = 1 

Query: 7   LLKPSWSSSLFASSSPRHSLSSTTPK--------------ASLQNSSVNRRQFVAETAAT 66
           L+KPS SS LFA    R +  +  P+              +S  +SS++RRQFV++TA T
Sbjct: 13  LVKPSLSS-LFAPRLSRANAQAQQPRFISTSRACSLPSSDSSSSSSSLSRRQFVSQTA-T 72

Query: 67  VSLSLSPFIAP---VPPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQ 126
           +SLS+S          PAKSEE+LS WER+Y+P+DPGVVLLDIAFVPDDL+ GFLLGTRQ
Sbjct: 73  LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 132

Query: 127 TILETKDGGRTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWER 186
           T+LETKDGG+TWAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILL+TSDAGESWER
Sbjct: 133 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 192

Query: 187 IPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSG 246
           IPLS+QLPGDMVYIKATG+KSAEMVTDEGAIY+TSN+GYNW+AAVQETVSATLNRTVSSG
Sbjct: 193 IPLSSQLPGDMVYIKATGEKSAEMVTDEGAIYITSNRGYNWRAAVQETVSATLNRTVSSG 252

Query: 247 ISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRA 306
           ISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTW+PGQ FWQPHNRA+ARRIQNMGWRA
Sbjct: 253 ISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWQPGQAFWQPHNRAVARRIQNMGWRA 312

Query: 307 DGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKT 366
           DGGLWLLVRGGGLFLSKGTGI+EEFEEVPVQSRGFGILDVG+RSQ+EAWAAGGSGVLLKT
Sbjct: 313 DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKT 372

Query: 367 TNGGRTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 395
           TNGG+TW R+KAADNIAANLYSVKFIN+KKGFVLGNDGVLLQYLG
Sbjct: 373 TNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 415

[Close]
BLAST of Cp4.1LG12g06360 vs. TrEMBL
Match: D7T9G8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02150 PE=4 SV=1)

HSP 1 Score: 649.8 bits (1675), Expect = 2.1e-183
Identity = 329/408 (80.64%), Postives = 361/408 (88.48%), Query Frame = 1 

Query: 1   MATLQQ--------LLKPSWSSSLFASSSPRHSLSST----TPKASLQNSSVNRRQFVAE 60
           MATLQ          LKPS  S  F  +  R+   ++     P+A LQ  S+ RR  +AE
Sbjct: 1   MATLQLSDYCNPVVALKPSLKS-FFIKTDHRNCCGASRVRVVPRACLQKPSLTRRHLLAE 60

Query: 61  TAATVSLSLSPFIAPV-PPAKSEESL-SEWERLYLPIDPGVVLLDIAFVPDDLDRGFLLG 120
           TAA   +S++P I  + PPAKSEE L SEWER+YLPIDPGVVLLDIAFVPDDL  GFLLG
Sbjct: 61  TAA---ISVAPLILGIEPPAKSEEPLLSEWERVYLPIDPGVVLLDIAFVPDDLSHGFLLG 120

Query: 121 TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGES 180
           TRQTI+ETKDGG TW PRSIPSAE+EDFNYRFN+ISFKGKEGWIVGKP+ILLYTSDAGES
Sbjct: 121 TRQTIMETKDGGNTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPSILLYTSDAGES 180

Query: 181 WERIPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV 240
           WERIPLSAQLPGD+VYIKATG+KSAEMVTDEGAIYVTSN+GYNW+AAVQETVSATLNRTV
Sbjct: 181 WERIPLSAQLPGDIVYIKATGEKSAEMVTDEGAIYVTSNRGYNWRAAVQETVSATLNRTV 240

Query: 241 SSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG 300
           SSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQP+WQPHNRA+ARRIQNMG
Sbjct: 241 SSGISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMG 300

Query: 301 WRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVL 360
           WRADGGLWLLVRGGGL+LSKGTGISE+FEE+PVQSRGFGILDVG+RS+EEAWAAGGSGVL
Sbjct: 301 WRADGGLWLLVRGGGLYLSKGTGISEDFEEIPVQSRGFGILDVGYRSKEEAWAAGGSGVL 360

Query: 361 LKTTNGGRTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 395
           L+TTNGG+TWTRDKAADNIAANLYSVKFI+D KGFVLGNDGVLL++LG
Sbjct: 361 LRTTNGGKTWTRDKAADNIAANLYSVKFIDDTKGFVLGNDGVLLRFLG 404

[Close]
BLAST of Cp4.1LG12g06360 vs. TAIR10
Match: AT5G23120.1 (AT5G23120.1 photosystem II stability/assembly factor, chloroplast (HCF136))

HSP 1 Score: 630.6 bits (1625), Expect = 6.7e-181
Identity = 307/377 (81.43%), Postives = 349/377 (92.57%), Query Frame = 1 

Query: 18  ASSSPRHSLSSTTPKASLQNSSVNRRQFVAETAATVSLSLSPFIAPVPPAKSEESLSEWE 77
           ASSSP  S S ++  +SL   S +RR+ + ++AA VSLSLS  + P   A+++E LSEWE
Sbjct: 34  ASSSPPPSPSPSSSSSSL---SFSRRELLYQSAA-VSLSLSSIVGP---ARADEQLSEWE 93

Query: 78  RLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYR 137
           R++LPIDPGVVLLDIAFVPD+  RGFLLGTRQT+LETKDGG TW PRSIPSAEEEDFNYR
Sbjct: 94  RVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYR 153

Query: 138 FNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGDKSAEMVTDE 197
           FN+ISFKGKEGWI+GKPAILLYT+DAGE+W+RIPLS+QLPGDMV+IKAT DKSAEMVTDE
Sbjct: 154 FNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDE 213

Query: 198 GAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSR 257
           GAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ VNRSPDGRYVAVSSR
Sbjct: 214 GAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSAVNRSPDGRYVAVSSR 273

Query: 258 GNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEV 317
           GNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL+LSKGTGI+EEFEEV
Sbjct: 274 GNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEV 333

Query: 318 PVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKFIND 377
           PVQSRGFGILDVG+RS+EEAWAAGGSG+LL+T NGG++W RDKAADNIAANLY+VKF++D
Sbjct: 334 PVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDD 393

Query: 378 KKGFVLGNDGVLLQYLG 395
           KKGFVLGNDGVLL+Y+G
Sbjct: 394 KKGFVLGNDGVLLRYVG 403

[Close]
BLAST of Cp4.1LG12g06360 vs. NCBI nr
Match: gi|659122869|ref|XP_008461367.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucumis melo])

HSP 1 Score: 751.1 bits (1938), Expect = 9.6e-214
Identity = 378/405 (93.33%), Postives = 389/405 (96.05%), Query Frame = 1 

Query: 1   MATLQQ-LLKPSWSSSLFASSSPRHSLS----------STTPKASLQNSSVNRRQFVAET 60
           MATLQQ LLKPSW+SSLFASSSPRHSLS          ST+PKASL NSS+NRRQFVA+T
Sbjct: 1   MATLQQQLLKPSWTSSLFASSSPRHSLSQPQLLPRTISSTSPKASLHNSSINRRQFVADT 60

Query: 61  AATVSLSLSPFIAPVPPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQ 120
           AA VSLSLSPFIAPV PAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDL+ GFLLGTRQ
Sbjct: 61  AAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQ 120

Query: 121 TILETKDGGRTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWER 180
           TILETKDGGRTWAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTSDAGESWER
Sbjct: 121 TILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWER 180

Query: 181 IPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSG 240
           IPLSAQLPGDMVYIKATG+KSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSG
Sbjct: 181 IPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSG 240

Query: 241 ISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRA 300
           ISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRA
Sbjct: 241 ISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRA 300

Query: 301 DGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKT 360
           DGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVG+RS+EEAWAAGGSGVLLKT
Sbjct: 301 DGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKT 360

Query: 361 TNGGRTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 395
           TNGGR+WTRDKAADNIAANLYSVKFIN+KKGFVLGNDGVLLQYLG
Sbjct: 361 TNGGRSWTRDKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 405

[Close]
BLAST of Cp4.1LG12g06360 vs. NCBI nr
Match: gi|449436353|ref|XP_004135957.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucumis sativus])

HSP 1 Score: 749.2 bits (1933), Expect = 3.6e-213
Identity = 379/406 (93.35%), Postives = 389/406 (95.81%), Query Frame = 1 

Query: 1   MATLQQ-LLKPSWSSSLFASS-SPRHSLS----------STTPKASLQNSSVNRRQFVAE 60
           MATLQQ LLKPSW+SSLFASS SPRHSLS          STTPKASL NSS+NRR FVA+
Sbjct: 1   MATLQQQLLKPSWTSSLFASSTSPRHSLSQPQLLPRTLSSTTPKASLHNSSINRRHFVAD 60

Query: 61  TAATVSLSLSPFIAPVPPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTR 120
           TAA VSLSLSPFIAPV PAKSEESLSEWERLYLPIDPGVVLLDIAFVPDD++ GFLLGTR
Sbjct: 61  TAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMNHGFLLGTR 120

Query: 121 QTILETKDGGRTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWE 180
           QTILETKDGGRTWAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTSDAGESWE
Sbjct: 121 QTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWE 180

Query: 181 RIPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSS 240
           RIPLSAQLPGDMVYIKATG+KSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSS
Sbjct: 181 RIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSS 240

Query: 241 GISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWR 300
           GISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWR
Sbjct: 241 GISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWR 300

Query: 301 ADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLK 360
           ADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVG+RS+EEAWAAGGSGVLLK
Sbjct: 301 ADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLK 360

Query: 361 TTNGGRTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 395
           TTNGGR+WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Sbjct: 361 TTNGGRSWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 406

[Close]
BLAST of Cp4.1LG12g06360 vs. NCBI nr
Match: gi|703090427|ref|XP_010094078.1| (hypothetical protein L484_018094 [Morus notabilis])

HSP 1 Score: 666.8 bits (1719), Expect = 2.4e-188
Identity = 338/401 (84.29%), Postives = 366/401 (91.27%), Query Frame = 1 

Query: 7   LLKPSWSSSLFASS-SPRHSLSSTTP-----KASLQNSSVN------RRQFVAETAATVS 66
           LLKPS++S  F ++ SPRH  SS  P     KAS  +SS +      RR+F+AETAA VS
Sbjct: 16  LLKPSFTSLFFNNTTSPRHFRSSQPPPRFIPKASSSSSSSSSSSLLCRRRFIAETAA-VS 75

Query: 67  LSL-SPFIAPVPPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQTILE 126
           LSL SPF+ PV PAKSE++LSEWER YLPIDPGVVLLDIAFVPDDL+ GFLLGTRQTILE
Sbjct: 76  LSLASPFLGPVQPAKSEDALSEWERCYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 135

Query: 127 TKDGGRTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLS 186
           TKDGG TW PRSIPSAE+EDFNYRFN+ISF GKEGWIVGKPAILLYTSDAGE+WERI LS
Sbjct: 136 TKDGGNTWVPRSIPSAEDEDFNYRFNSISFIGKEGWIVGKPAILLYTSDAGENWERIALS 195

Query: 187 AQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGA 246
           AQLPGDMVYIKATG+K AEMVTD+GAIYVTSNKGYNW+AAVQETVSATLNRTVSSGISGA
Sbjct: 196 AQLPGDMVYIKATGEKGAEMVTDQGAIYVTSNKGYNWRAAVQETVSATLNRTVSSGISGA 255

Query: 247 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 306
           SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADGGL
Sbjct: 256 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGL 315

Query: 307 WLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGG 366
           WLLVRGGGLFLSKGTGI+E+FEEV VQSRGFGILDVG+RSQEEAWAAGGSG+LL+TTNGG
Sbjct: 316 WLLVRGGGLFLSKGTGITEDFEEVAVQSRGFGILDVGYRSQEEAWAAGGSGILLRTTNGG 375

Query: 367 RTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 395
           ++W RDKAADNIAANLYSVKFI+DKKGFVLGNDGVLL+YLG
Sbjct: 376 KSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 415

[Close]
BLAST of Cp4.1LG12g06360 vs. NCBI nr
Match: gi|823159965|ref|XP_012479823.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Gossypium raimondii])

HSP 1 Score: 659.4 bits (1700), Expect = 3.8e-186
Identity = 328/380 (86.32%), Postives = 352/380 (92.63%), Query Frame = 1 

Query: 15  SLFASSSPRHSLSSTTPKASLQNSSVNRRQFVAETAATVSLSLSPFIAPVPPAKSEESLS 74
           S F S +  H  SS +  +S   S VNRRQ +++TA+ +SLSL+   +   PAKSEE LS
Sbjct: 38  SRFISKASLHHPSSPSSSSS-PPSLVNRRQIISQTAS-ISLSLATLSSLPLPAKSEEVLS 97

Query: 75  EWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDF 134
           EWER+YLPIDPGVVLLDIAFVPDDL+ GFLLGTRQTILETKDGG TW  RSIPSAE+EDF
Sbjct: 98  EWERVYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGNTWTQRSIPSAEDEDF 157

Query: 135 NYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGDKSAEMV 194
           NYRFN+ISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATG+KSAEMV
Sbjct: 158 NYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMV 217

Query: 195 TDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAV 254
           TD+GAIYVTSN+GYNW+AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAV
Sbjct: 218 TDQGAIYVTSNRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAV 277

Query: 255 SSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEF 314
           SSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISE+F
Sbjct: 278 SSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDF 337

Query: 315 EEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKF 374
           EEVPVQSRGFGILDVG+RS+EEAWAAGGSGVLL+TTNGG+ WTRDKAADNIAANLYSVKF
Sbjct: 338 EEVPVQSRGFGILDVGYRSEEEAWAAGGSGVLLRTTNGGKNWTRDKAADNIAANLYSVKF 397

Query: 375 INDKKGFVLGNDGVLLQYLG 395
           INDKKGFVLGNDGVLL+YLG
Sbjct: 398 INDKKGFVLGNDGVLLRYLG 415

[Close]
BLAST of Cp4.1LG12g06360 vs. NCBI nr
Match: gi|719963529|ref|XP_010249997.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 659.1 bits (1699), Expect = 5.0e-186
Identity = 331/402 (82.34%), Postives = 363/402 (90.30%), Query Frame = 1 

Query: 1   MATLQQ-------LLKPSWSSSLFASSSP-RHSLSSTTPKASLQNSSVNRRQFVAETAAT 60
           MATLQ        +L+ S  ++LF  +   R+S +    +ASL   S+NRRQF+AETAA 
Sbjct: 1   MATLQFTDYSNPIILQRSSLNALFIRNRHHRNSQARFVTRASLHQPSMNRRQFIAETAA- 60

Query: 61  VSLSLSPFIAPVPPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLDRGFLLGTRQTIL 120
           VSLSL+P    V PAKSEE+LSEWER+YLPIDPGVVLLDIAFVPD L+ GFLLGTRQTIL
Sbjct: 61  VSLSLAPLSGFVEPAKSEEALSEWERVYLPIDPGVVLLDIAFVPDQLNHGFLLGTRQTIL 120

Query: 121 ETKDGGRTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPL 180
           ETKDGG TW PRSIPSAE+EDFNYRFN+ISF+ KEGWIVGKPAILLYTSDAGESWERIPL
Sbjct: 121 ETKDGGNTWVPRSIPSAEDEDFNYRFNSISFRAKEGWIVGKPAILLYTSDAGESWERIPL 180

Query: 181 SAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISG 240
           SAQLPGD+VYIKATG+ SAEMVTD+GAIYVTSN+GYNW+AAVQETVSATLNRTVSSGISG
Sbjct: 181 SAQLPGDIVYIKATGENSAEMVTDQGAIYVTSNRGYNWRAAVQETVSATLNRTVSSGISG 240

Query: 241 ASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGG 300
           ASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQP+WQPHNRA+ARRIQNMGWRADGG
Sbjct: 241 ASYYTGTFNTVNRSPDGNYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADGG 300

Query: 301 LWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNG 360
           LWLLVRGGGLFLSKGTGI+EEF+EVPVQSRGFGILDVG+RS++EAWAAGGSGVLL+TTNG
Sbjct: 301 LWLLVRGGGLFLSKGTGITEEFDEVPVQSRGFGILDVGYRSKDEAWAAGGSGVLLRTTNG 360

Query: 361 GRTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 395
           G+TW RDKAADNIAANLYSVKFIND KGFVLGNDGVLL+YLG
Sbjct: 361 GKTWIRDKAADNIAANLYSVKFINDNKGFVLGNDGVLLRYLG 401

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g06360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
P2SAF_ARATH1.2e-17981.43Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis th... [more]
P2SAF_ORYSJ5.7e-17475.81Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa s... [more]
P2SAF_GUITH7.6e-9445.58Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia the... [more]
YC48L_SYNY31.6e-8048.14Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr2034 PE... [more]
P2SAF_CYAPA2.4e-7946.60Photosystem II stability/assembly factor HCF136 OS=Cyanophora paradoxa GN=hcf136... [more]
BLAST of Cp4.1LG12g06360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5Y1_CUCSA2.5e-21393.35Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420730 PE=4 SV=1[more]
W9R3A0_9ROSA1.7e-18884.29Uncharacterized protein OS=Morus notabilis GN=L484_018094 PE=4 SV=1[more]
A0A0D2SL22_GOSRA2.7e-18686.32Uncharacterized protein OS=Gossypium raimondii GN=B456_005G210500 PE=4 SV=1[more]
V4TGT7_9ROSI7.2e-18480.99Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031672mg PE=4 SV=1[more]
D7T9G8_VITVI2.1e-18380.64Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02150 PE=4 SV=... [more]
BLAST of Cp4.1LG12g06360 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23120.16.7e-18181.43 photosystem II stability/assembly factor, chloroplast (HCF136)[more]
BLAST of Cp4.1LG12g06360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122869|ref|XP_008461367.1|9.6e-21493.33PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucum... [more]
gi|449436353|ref|XP_004135957.1|3.6e-21393.35PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucum... [more]
gi|703090427|ref|XP_010094078.1|2.4e-18884.29hypothetical protein L484_018094 [Morus notabilis][more]
gi|823159965|ref|XP_012479823.1|3.8e-18686.32PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Gossy... [more]
gi|719963529|ref|XP_010249997.1|5.0e-18682.34PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nelum... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028203PSII_CF48-like_dom
IPR016705Ycf48/Hcf136
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009735 response to cytokinin
biological_process GO:0008150 biological_process
biological_process GO:0006412 translation
biological_process GO:0042793 transcription from plastid promoter
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0006364 rRNA processing
biological_process GO:0009637 response to blue light
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009902 chloroplast relocation
biological_process GO:0035304 regulation of protein dephosphorylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009533 chloroplast stromal thylakoid
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g06360.1Cp4.1LG12g06360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016705Photosynthesis system II assembly factor Ycf48/Hcf136PIRPIRSF017875Photosystem_II_Ycf48-likecoord: 36..394
score: 2.4E
IPR028203Photosynthesis system II assembly factor Ycf48/Hcf136-like domainPFAMPF14870PSII_BNRcoord: 71..392
score: 2.4E
NoneNo IPR availableGENE3DG3DSA:2.130.10.140coord: 85..364
score: 4.8
NoneNo IPR availablePANTHERPTHR32010FAMILY NOT NAMEDcoord: 24..394
score: 4.0E
NoneNo IPR availablePANTHERPTHR32010:SF6PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTICcoord: 24..394
score: 4.0E
NoneNo IPR availableunknownSSF110296Oligoxyloglucan reducing end-specific cellobiohydrolasecoord: 76..393
score: 1.83

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g06360Cucsa.128310Cucumber (Gy14) v1cgycpeB0334
Cp4.1LG12g06360CmaCh17G009900Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g06360CmaCh08G005010Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g06360CmoCh08G004940Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g06360CmoCh17G009620Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g06360Cla015198Watermelon (97103) v1cpewmB131
Cp4.1LG12g06360Csa7G420730Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g06360MELO3C023596Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g06360ClCG09G004540Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g06360CSPI07G18770Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g06360MELO3C023596.2Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g06360CsaV3_7G030600Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g06360Bhi09G000606Wax gourdcpewgoB0201
Cp4.1LG12g06360CsGy7G017210Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g06360Carg13414Silver-seed gourdcarcpeB0631
Cp4.1LG12g06360Carg07081Silver-seed gourdcarcpeB0158
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g06360Cp4.1LG17g07750Cucurbita pepo (Zucchini)cpecpeB157
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g06360Cucumber (Chinese Long) v3cpecucB0158
Cp4.1LG12g06360Wax gourdcpewgoB0171
Cp4.1LG12g06360Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g06360Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG12g06360Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g06360Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g06360Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g06360Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g06360Wild cucumber (PI 183967)cpecpiB138
Cp4.1LG12g06360Cucumber (Chinese Long) v2cpecuB137
Cp4.1LG12g06360Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g06360Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g06360Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g06360Watermelon (97103) v1cpewmB141
Cp4.1LG12g06360Cucumber (Gy14) v2cgybcpeB308
Cp4.1LG12g06360Silver-seed gourdcarcpeB1070
Cp4.1LG12g06360Silver-seed gourdcarcpeB1143