CmaCh08G005010 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G005010
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Photosystem II stability/assembly factor HCF136, chloroplast, putative
Location	Cma_Chr08 : 2876469 .. 2881371 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATGTGAGAGATAAGAGGTCGACCAGCACTGCTCTGCTCCTTTCCTTCTCTCTTCAATGGCGACTCTGCAACAACTCCTTAGACCTTCATGGTTCGCATCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAAGTTCAGCCACAAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTGGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCAGTAAAACCGGCGAAGTCTGAAGAAAATCTGTCGCAGTGGGAGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTAGTTCCGATAGCTTTGGTTCCTTTTTCTGCAGAAATCAACGAGTAGTGCTGGAGAATTGAGTTTGTTTTTGTTTTTCTTCTACGAATTATTGTGTTTCGGAAACTCACTAGTCACAGCAATTAATTGTTGGAAACATCTAAAATTTGGGAGGATTTGTACACTGAAATGCTATTAGGCGGTACAGTTGTATCTTCAATTGTCTTCTTTAAAGGCTAGAATTGTGTTCTACTTAAGTTAAGCTGGTCTTCATTTCCAATTATTTTAAAATCAGTTTCTTCATCAATAATTCTTTTGGGGGGTGGGGAGTTTGAGCCTTGGTGTGTTATTGAAATCTTGGAAAAATTTTCTCATTATCACTTTTTCAAGTGATTTTATCTACCTTGTTTGTGCTTACGGATTCTGTCAAGGCTTCTGAATGTCGTAATTTGTAATTTCTCGTTCGTACAGTTATGGTTTCAAGTTCCTTCCGCCAACATAATGCCACGAAACCATTTGACACTTTCAGCCCACTGCAGGTTTCCTTTTGGGGACCAGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATACCCTCAGCTGAAGAAGAAGACTTCAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATTGTTGGAAAACCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGATAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTAAACTACTAAATTATATAATCGATTAGGAATTCATTATACGGCAGTGCTTGAACTTTAGGTTGTTCTATTTTCAGATCTTGCTATTTTATAGATTTTGCTTTATCCATTGTACTTATAAGGCTCATTTACTATAGTTAAACGTGGTGAGACCGTAAATAAGGGATTATTCACAGCTATAAATTAAGGTGCAAATTTTGGTTCTTTTAACATATCTACAGCTATAAATTGATCTGTTCTTTTCTGGCAGAAAGTGCTTTTATTTAAAACACTAGAGTGGTTGATTCTATTAGAAAACTTCAGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGGTGAGCTTCAGCAGGGGAAAATTTCCATTCTATTAGGTTTAAGATTAAAGATTCGTTGTTCGGAATTTAACCTTGAAATCATTCCGGAATAGTTGATGGGCTGATAACTGATGAGATTTGACCGGCAGCTTGTGGCAGGAAATCATGGGCCAGACCTACAATGTTCACTAGTTTAGCTCATTGAAAGAAAAAATTTAATCCCGATTACGTGATGCTAATGTGGTTTTCTTTACCTTTTTCAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACATTTAACACAGTAAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGGTTTAACTTTTATATTTCTCTCTCTATTTCTCTTCTTCTAACCGTGTTACTCTGAACTGGCTTACTCTGAACTTTTATATTTCATTAAATCTTGGCTTTATTTGCAAGACCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGAACAGGAGTAAGTGAAATTGAGGACCGTTCATTTGTGTTTCTACTTTCTAATGAAGCCACCCTAATTGAAAATATGAAAAATGGTTTAGAGGTGCAATGTGGTATGATTTTAACCCTTGCCAAAAACCATTTCCCTCCTTTTACAAGTTACTTGAACATTGAATATCGTACAATAAGTTCTCATCTTTAGACTTGGGGATGCATAATAATTCAATGACGGAATCCTATAATCGCATTGCTTTTCAGATATACTATCATTAGAAACTTTTGTAGTTTTTTGTGTTAATCAAACTCGTGAAAACGTCATAAGCGAACAAAACTAATTTTTCATCATATTCATGATTAACTTGAAAACAGAGTGACAAGTAAATTCTAAATTGTCATTCTATAGGTTATATCTATGCTGTTGCTTCCCAAAATTTCAGCTAGACCTCTCAGCCAACTCCCCACTCCTGTTAAATATTAACTGCTTGTTGAATTCATTATGTTTCACACAACAGATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGACGTTGGTTATCGTTCAAAGGTAAGTTCTTGAAGCCTTAAACATGATTGTTTAGTTTTTTCATTAACATGCTATGAGTTGAGCTGAAATATACAGTACTAAACGTGCACTGTGCAGCACTAATTATTTATTCCAGCACCAATGTGTGTGTGAGAGAGACCGAGAGCACAAATGATTAGATCAATGAATAAAATGGCTAGATGAGAGAAACAGAGGGAGAACGAGATAGAATTTTCAATGACTAGATTAAGAAAATACTTATGATTCATCTTGACTAGCATGTGTTCTCATGCTTTCCAACTTACATAACTGTTTCTGATTTCCAATACATCAACTGCCTACATGTTGCTTTTCTTACTAGTTGAGAGTGTTGAACTTTGCTAGGTAAAGTTTGTTTGTATTTGAGCAGGTTATTCTTCTGGCCACGGTAGCAAGTATGAATGAGAGAAAAACTAAAAGATTCATCTTTTAAAGGATCAGTTTGTGCATGAAATATAGCTGGAAAAGCCTCCGTTTTTGTGACGATGAGAAAAAAATGAATTGTTTTTCAGGCATTTTAATTAGCCTGGTGCATATTTATGAAATAAGGTGTGGGTATGTTCTACATCTTCCCCGGAGTAGTTAGATTTCTCATTTAATCACATACCTTCCTGCAATTCTCAACGTGAGGAATGACGGTACTAACATAGAACTTGTACGATCTTGTGTTCATAATAAATAATTGCATTGTCCAAGATACCTTGAGCTTGTAGTCGGAAGTCATATATATATTGTGCTAAGTGTAGTGCATATCTCATCATCCCTTGGCAATGAATATATAATCTGTATGCTGAATTTGAAGACACATATCCTTTTACAACCTTACTTGAACAAGATCAGTTCTATAGGTTGTACATTTGTGTAGTTCGAGTTCTAAAGATTCATTTCATTTCCGGATTTATCATAAGTGCCAGACAAAAACTAAGTCATCCCTTTACCCAAAATCGATCATCGCCTTGGTGAATATTTTTTACAGTTTTTCTTGTTTCTGGTGTGAGTTGTACAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACCTATACTCTGTAAAGTGAGTATCACCATACTGTGAAATAAAGTCTGTTATCCCTTAGGTGAGTAATGTGTAAGAAGAAGAATCAAAGCTCTATTCCTTGCTTCTTCTTTAGGGTAGGTTTGGGATGAATTTTGGTAGGTAAAAAATGTTTTTAACCTATTCGGAAAGTTTTTGTGGTGTTCAGTTAGATAACTGAAAATAATTCAAAAAATTTTAAAAACACTTGTGCCTTCAATGTTCTTTCATTTTGAAAAGTCACAATCAATATGGCTGCTAACACAATGCAATTGTGCTATAGTTCACCTTCACATATTCTCATATAATCAATCTACTTGCATATCCGCAGGTTTATAAACGATAAGAAAGGTTTTGTACTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGAACTTTGAGATTTTACTCGGTAATTAATGCCTCTTCCTTCTCTTCTTTGATTCTTCTTTTGCCATCTCAGGCTCTTGCTGTGTGTAAATGTAATTTTTTTAACCCTACATTCCAAACTGTTCTAAAATTATATGCAGAATATAAAAGCAGTAAAAGGGTAACCTTTAAGAACATTTATTATTTTGTTTCTTGAAATTTGTTAAACTCGAAAAATGTTCCAGAAAGACTATTTATGAACTTTATTTTGTGTAGATATACATTATTGGCTTGCAAAACTAGGGAATTTATGCTTATTGTTCTCGAAGCAGAGGCTGTTATTCGGGATTGGAAATTATTTTCCGTTTACTAATTGGTTATGTTGTAGGCTTACTTAATTGTTACAGCATTGTTCTCATTGCTTTATCAAAGATTCAGGTTTTGGCATTTTTCTTTTTCAGGTTACAGAATCAGATTTTATATGATGCTTGCGATGGAAATTTTGTATCGTTAAAGAACAGCTTTGCGTTCTTGCTTTCGACGATGGGACGAGGTGCTAATGTTCCCCAGTTACATATTTTCCTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

ATAATGTGAGAGATAAGAGGTCGACCAGCACTGCTCTGCTCCTTTCCTTCTCTCTTCAATGGCGACTCTGCAACAACTCCTTAGACCTTCATGGTTCGCATCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAAGTTCAGCCACAAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTGGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCAGTAAAACCGGCGAAGTCTGAAGAAAATCTGTCGCAGTGGGAGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTTCCTTTTGGGGACCAGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATACCCTCAGCTGAAGAAGAAGACTTCAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATTGTTGGAAAACCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGATAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACATTTAACACAGTAAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGAACAGGAATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGACGTTGGTTATCGTTCAAAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACCTATACTCTGTAAAGTTTATAAACGATAAGAAAGGTTTTGTACTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGAACTTTGAGATTTTACTCGGTTACAGAATCAGATTTTATATGATGCTTGCGATGGAAATTTTGTATCGTTAAAGAACAGCTTTGCGTTCTTGCTTTCGACGATGGGACGAGGTGCTAATGTTCCCCAGTTACATATTTTCCTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCGACTCTGCAACAACTCCTTAGACCTTCATGGTTCGCATCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAAGTTCAGCCACAAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTGGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCAGTAAAACCGGCGAAGTCTGAAGAAAATCTGTCGCAGTGGGAGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTTCCTTTTGGGGACCAGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATACCCTCAGCTGAAGAAGAAGACTTCAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATTGTTGGAAAACCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGATAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACATTTAACACAGTAAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGAACAGGAATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGACGTTGGTTATCGTTCAAAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACCTATACTCTGTAAAGTTTATAAACGATAAGAAAGGTTTTGTACTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGA

Protein sequence

MATLQQLLRPSWFASSSPRHSFTSLSQPQVQPQTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG

Homology

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BLAST of CmaCh08G005010 vs. Swiss-Prot
Match: P2SAF_ARATH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1)

HSP 1 Score: 631.7 bits (1628), Expect = 5.4e-180
Identity = 307/392 (78.32%), Postives = 352/392 (89.80%), Query Frame = 1


Query: 15  SSSPRHSFTSLSQ---PQVQPQTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIA 74
           S SPR     +S    P+       S +P +S  + S +RRE + ++AA VSLSLS ++ 
Sbjct: 16  SVSPRFLSQRISHRLIPKASSSPPPSPSPSSSSSSLSFSRRELLYQSAA-VSLSLSSIVG 75

Query: 75  PVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWA 134
           P   A+++E LS+WER++LPIDPGVVLLDIAFVPD+ + GFLLGTRQT+LETKDGG TW 
Sbjct: 76  P---ARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWN 135

Query: 135 PRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIPLSAQLPGDMVY 194
           PRSIPSAEEEDFNYRFNSISF+GKEGWI+GKPAILLYT+DAGE+WDRIPLS+QLPGDMV+
Sbjct: 136 PRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVF 195

Query: 195 IKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNT 254
           IKAT +KSAEMVTDEGAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ 
Sbjct: 196 IKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSA 255

Query: 255 VNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGL 314
           VNRSPDGRYVAVSSRGNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL
Sbjct: 256 VNRSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 315

Query: 315 FLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAA 374
           +LSKGTGI+E+FEEVPVQSRGFGILDVGYRS+EEAWAAGGSG+LL+T NGGK+W RDKAA
Sbjct: 316 YLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAA 375

Query: 375 DNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           DNIAANLY+VKF++DKKGFVLGNDGVLL+Y+G
Sbjct: 376 DNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403

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BLAST of CmaCh08G005010 vs. Swiss-Prot
Match: P2SAF_ORYSJ (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 5.6e-177
Identity = 306/392 (78.06%), Postives = 338/392 (86.22%), Query Frame = 1


Query: 38  VTPKASIKNSSINRREFVAETA-AAVSLSLSPLIAPVKP---AKSEENLSQWERLYLPID 97
           + P+A   + S  RR F+A+TA A+ + ++ PL+ P  P   A    +LS+WER+ LPID
Sbjct: 25  LVPRAHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQPPSLSEWERVLLPID 84

Query: 98  PGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQ 157
           PGVVLLDIAFVPDD +HGFLLGTRQTILETK+GG TW PRSIPSAE+EDFNYRFNS+SF 
Sbjct: 85  PGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDEDFNYRFNSVSFM 144

Query: 158 GKEGWIVGKPAILLYTSDAGESWDRIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTS 217
           GKEGWI+GKPAILL+TSDAG+SW+RIPLSAQLPG+MVYIKATGE+SAEMVTDEGAIYVTS
Sbjct: 145 GKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQSAEMVTDEGAIYVTS 204

Query: 218 NKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTW 277
           N+GYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTW
Sbjct: 205 NRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTW 264

Query: 278 EPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTG--------------- 337
           EPGQPFWQPHNRA+ARRIQNMGWRADGGLWLLVRGGGLFLSKG+G               
Sbjct: 265 EPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGFQFFYRGLNDAHAIS 324

Query: 338 -------ISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAA 397
                  I+EDFEE  VQSRGFGILDVGYRSK+EAWAAGGSGVLLKTTNGGKTW RDKAA
Sbjct: 325 YLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAA 384

Query: 398 DNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           DNIAANLYSVKF+ D KG+VLGNDGVLL+Y+G
Sbjct: 385 DNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416

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BLAST of CmaCh08G005010 vs. Swiss-Prot
Match: P2SAF_GUITH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia theta GN=hcf136 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.3e-96
Identity = 168/362 (46.41%), Postives = 246/362 (67.96%), Query Frame = 1


Query: 49  INRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDL 108
           INR +F+       +  L P +  + P  +  N + W ++ LP+D   VL DI F   + 
Sbjct: 42  INRTKFI-------NYLLYPTLTSLYPKFTHANTTSWTKVDLPVDS--VLFDIEFTDPEC 101

Query: 109 NHGFLLGTRQTILETKDGGRTWAPRSIPSAE-EEDFNYRFNSISFQGKEGWIVGKPAILL 168
            HG+L+G++ T LET DGG TW PR+  + + +E+  YRF +ISF+G+EGW++GKPAI+L
Sbjct: 102 KHGWLVGSKGTFLETDDGGNTWVPRTFANLDPDEELTYRFENISFEGQEGWVIGKPAIIL 161

Query: 169 YTSDAGESWDRIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETV 228
           YT D G++W R+P+S +LPG+   IKA G +SAE+ T  GAIYVT+N G NWKA V+ET+
Sbjct: 162 YTKDGGKTWFRVPVSPKLPGEPCLIKALGSESAELTTTSGAIYVTNNAGRNWKAQVKETI 221

Query: 229 SATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAI 288
            +TLNRT+SSG+SGASY+TG    V R+ +G+Y+A+SSRGNFYLTWEPGQ FW P  R  
Sbjct: 222 DSTLNRTISSGVSGASYFTGNVINVIRNSEGKYLAISSRGNFYLTWEPGQDFWIPRARET 281

Query: 289 ARRIQNMGWRADG---GLWLLVRGGGLFLSKGT----GISE-DFEEVPVQSRGFGILDVG 348
           +RRIQ+MG+  +    G+W+  RGGGL +S        IS  +FE + +++ G+GILD  
Sbjct: 282 SRRIQSMGFIQNDNQKGIWMSTRGGGLSVSTKNFDFESISSFNFENIDIKTGGYGILDAA 341

Query: 349 YRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLL 402
           + + ++ W   G G++  +T+ GK WT+    D ++ NLY +KF+N+ KGF+LG++G+LL
Sbjct: 342 FVNDKDIWIICGGGIVYNSTDKGKNWTKVDGIDKLSGNLYKIKFVNNNKGFILGSNGLLL 394

[Close]

BLAST of CmaCh08G005010 vs. Swiss-Prot
Match: YC48L_SYNY3 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr2034 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 5.8e-81
Identity = 155/318 (48.74%), Postives = 202/318 (63.52%), Query Frame = 1


Query: 85  WERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFN 144
           W+ + L  D      DIAF  +D NHG+L+GT++TI ET DGG TW  + I   EE+   
Sbjct: 40  WQEIALETDS--TFADIAFT-EDPNHGWLVGTKETIFETTDGGDTWEQKLIDLGEEKA-- 99

Query: 145 YRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIPLSAQLPGDMVYIKATGEKSAEMVT 204
             F+++SF G EGWI GKP+ILL+T+D G++W RIPLS +LPG    I A G ++AEM+T
Sbjct: 100 -SFSAVSFSGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPGAPYSIIALGPQTAEMIT 159

Query: 205 DEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVS 264
           D GAIY T+N G NWKA V+  V                   G   T+ RS DGRYVAVS
Sbjct: 160 DLGAIYKTTNGGKNWKALVEGAV-------------------GVARTIQRSTDGRYVAVS 219

Query: 265 SRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFE 324
           +RGNFY TW PGQ  W PHNR  +RR+Q MG+  DG LWLL RGG L  S      E  +
Sbjct: 220 ARGNFYSTWAPGQTEWTPHNRNSSRRLQTMGYGKDGQLWLLARGGQLQFSTDPDAEEWSD 279

Query: 325 EVPVQSRG-FGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKF 384
            +  Q +G +G+LD+ +R+ EE W AG SG LL + +GG+TW +D   ++I ANLY V F
Sbjct: 280 VIAPQDKGSWGLLDLSFRTPEEVWVAGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVF 332

Query: 385 INDKKGFVLGNDGVLLQY 402
           ++ +KGFVLG DG+LL+Y
Sbjct: 340 LSPEKGFVLGQDGILLKY 332

[Close]

BLAST of CmaCh08G005010 vs. Swiss-Prot
Match: YC48L_THEEB (Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=1 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.7e-80
Identity = 151/343 (44.02%), Postives = 211/343 (61.52%), Query Frame = 1


Query: 62  VSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTIL 121
           VSLS   L  P        + + WE + LP      +LD++F+  D +HG+L+G   T++
Sbjct: 30  VSLSTPALAIPAL------DYNPWEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLM 89

Query: 122 ETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIPL 181
           ET+DGG+TW PR++     +   YRFNS+SFQG EGWIVG+P I+L+T+D G+SW +IPL
Sbjct: 90  ETRDGGQTWEPRTLVLDHSD---YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPL 149

Query: 182 SAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISG 241
             +LPG    IKA G  SAEM+T+ GAIY T + G NW+A VQE +              
Sbjct: 150 DPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAI-------------- 209

Query: 242 ASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGG 301
                G    +NRSP G YVAVSSRG+FY TWEPGQ  W+PHNR  +RR+ NMG+  DG 
Sbjct: 210 -----GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR 269

Query: 302 LWLLVRGGGLFLSKGTGISEDFEEV--PVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTT 361
           LW++V GG +  S     SE++ E+  P++    G LD+ YR+  E W AGG+G LL + 
Sbjct: 270 LWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQ 329

Query: 362 NGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYL 403
           +GG+TW +D     + +N Y + F +  +GF+LG  G+LL+Y+
Sbjct: 330 DGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 339

[Close]

BLAST of CmaCh08G005010 vs. TrEMBL
Match: A0A0A0K5Y1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420730 PE=4 SV=1)

HSP 1 Score: 756.5 bits (1952), Expect = 1.6e-215
Identity = 379/409 (92.67%), Postives = 395/409 (96.58%), Query Frame = 1


Query: 1   MATLQQ-LLRPSW----FASS-SPRHSFTSLSQPQVQPQTVNSVTPKASIKNSSINRREF 60
           MATLQQ LL+PSW    FASS SPRHS   LSQPQ+ P+T++S TPKAS+ NSSINRR F
Sbjct: 1   MATLQQQLLKPSWTSSLFASSTSPRHS---LSQPQLLPRTLSSTTPKASLHNSSINRRHF 60

Query: 61  VAETAAAVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLL 120
           VA+TAAAVSLSLSP IAPV+PAKSEE+LS+WERLYLPIDPGVVLLDIAFVPDD+NHGFLL
Sbjct: 61  VADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMNHGFLL 120

Query: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGE 180
           GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGE
Sbjct: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGE 180

Query: 181 SWDRIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240
           SW+RIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT
Sbjct: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240

Query: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300
           VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM
Sbjct: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300

Query: 301 GWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360
           GWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV
Sbjct: 301 GWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360

Query: 361 LLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           LLKTTNGG++WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Sbjct: 361 LLKTTNGGRSWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 406

[Close]

BLAST of CmaCh08G005010 vs. TrEMBL
Match: W9R3A0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018094 PE=4 SV=1)

HSP 1 Score: 672.5 bits (1734), Expect = 3.1e-190
Identity = 336/403 (83.37%), Postives = 367/403 (91.07%), Query Frame = 1


Query: 7   LLRPSWFA-----SSSPRHSFTSLSQPQVQPQTVNSVTPKASIKNSSINRREFVAETAAA 66
           LL+PS+ +     ++SPRH  +S   P+  P+  +S +  +S  +S + RR F+AET AA
Sbjct: 16  LLKPSFTSLFFNNTTSPRHFRSSQPPPRFIPKASSSSSSSSS--SSLLCRRRFIAET-AA 75

Query: 67  VSLSL-SPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 126
           VSLSL SP + PV+PAKSE+ LS+WER YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 76  VSLSLASPFLGPVQPAKSEDALSEWERCYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 135

Query: 127 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIP 186
           LETKDGG TW PRSIPSAE+EDFNYRFNSISF GKEGWIVGKPAILLYTSDAGE+W+RI 
Sbjct: 136 LETKDGGNTWVPRSIPSAEDEDFNYRFNSISFIGKEGWIVGKPAILLYTSDAGENWERIA 195

Query: 187 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 246
           LSAQLPGDMVYIKATGEK AEMVTD+GAIYVTSNKGYNW+AAVQETVSATLNRTVSSGIS
Sbjct: 196 LSAQLPGDMVYIKATGEKGAEMVTDQGAIYVTSNKGYNWRAAVQETVSATLNRTVSSGIS 255

Query: 247 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 306
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADG
Sbjct: 256 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADG 315

Query: 307 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 366
           GLWLLVRGGGLFLSKGTGI+EDFEEV VQSRGFGILDVGYRS+EEAWAAGGSG+LL+TTN
Sbjct: 316 GLWLLVRGGGLFLSKGTGITEDFEEVAVQSRGFGILDVGYRSQEEAWAAGGSGILLRTTN 375

Query: 367 GGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           GGK+W RDKAADNIAANLYSVKFI+DKKGFVLGNDGVLL+YLG
Sbjct: 376 GGKSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 415

[Close]

BLAST of CmaCh08G005010 vs. TrEMBL
Match: A0A0D2SL22_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G210500 PE=4 SV=1)

HSP 1 Score: 666.4 bits (1718), Expect = 2.2e-188
Identity = 335/401 (83.54%), Postives = 361/401 (90.02%), Query Frame = 1


Query: 8   LRPSWFASSSPRHSFTSLSQPQVQPQTVNSVTPKASIKNSS-----INRREFVAETAAAV 67
           L PS  +   PR     LS P  +  +  S+   +S  +SS     +NRR+ +++TA+ +
Sbjct: 16  LIPSLTSLFPPRLLHRPLSLPHSRFISKASLHHPSSPSSSSSPPSLVNRRQIISQTAS-I 75

Query: 68  SLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 127
           SLSL+ L +   PAKSEE LS+WER+YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE
Sbjct: 76  SLSLATLSSLPLPAKSEEVLSEWERVYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 135

Query: 128 TKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIPLS 187
           TKDGG TW  RSIPSAE+EDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGESW+RIPLS
Sbjct: 136 TKDGGNTWTQRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLS 195

Query: 188 AQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGA 247
           AQLPGDMVYIKATGEKSAEMVTD+GAIYVTSN+GYNW+AAVQETVSATLNRTVSSGISGA
Sbjct: 196 AQLPGDMVYIKATGEKSAEMVTDQGAIYVTSNRGYNWRAAVQETVSATLNRTVSSGISGA 255

Query: 248 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 307
           SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL
Sbjct: 256 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 315

Query: 308 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG 367
           WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRS+EEAWAAGGSGVLL+TTNGG
Sbjct: 316 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGVLLRTTNGG 375

Query: 368 KTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           K WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLL+YLG
Sbjct: 376 KNWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLRYLG 415

[Close]

BLAST of CmaCh08G005010 vs. TrEMBL
Match: A0A061E463_THECC (Photosystem II stability/assembly factor, chloroplast (HCF136) isoform 1 OS=Theobroma cacao GN=TCM_007737 PE=4 SV=1)

HSP 1 Score: 662.9 bits (1709), Expect = 2.5e-187
Identity = 330/401 (82.29%), Postives = 362/401 (90.27%), Query Frame = 1


Query: 8   LRPSWFASSSPRHSFTSLSQPQVQPQTVNSVTPKASIKNSS-----INRREFVAETAAAV 67
           L+PS  +  SPR  F   SQ Q  P+ +   + +    +SS     +NRR+ +++TA+ +
Sbjct: 14  LKPSLTSLFSPR--FLHRSQTQPHPRLICKASLQQPHHSSSSSPTLVNRRQLISQTAS-L 73

Query: 68  SLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 127
           SLS++ L A   PAKSEE LS+WER+YLPIDPGVVLLDIAFVPDD NHGFLLGTRQTILE
Sbjct: 74  SLSVATLSALQLPAKSEEVLSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILE 133

Query: 128 TKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIPLS 187
           TKDGG TW PRSIPSAE+EDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGESW+RIPLS
Sbjct: 134 TKDGGNTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLS 193

Query: 188 AQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGA 247
           AQLPGDMVYIKAT EKSAEMVTD+GAIYVTSN+G+NW+AAVQETVSATLNRTVSSGISGA
Sbjct: 194 AQLPGDMVYIKATDEKSAEMVTDQGAIYVTSNRGFNWRAAVQETVSATLNRTVSSGISGA 253

Query: 248 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 307
           SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADGGL
Sbjct: 254 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGL 313

Query: 308 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG 367
           WLLVRGGGLFLSKGTGI+EDFEE+PVQSRGFGILDVGYRS EEAWAAGGSGVLL+TTNGG
Sbjct: 314 WLLVRGGGLFLSKGTGITEDFEEIPVQSRGFGILDVGYRSMEEAWAAGGSGVLLRTTNGG 373

Query: 368 KTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           K+WTRDKAADNIAANLYSVKFI+DKKGFVLGNDGVLL+YLG
Sbjct: 374 KSWTRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 411

[Close]

BLAST of CmaCh08G005010 vs. TrEMBL
Match: D7T9G8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02150 PE=4 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 2.7e-186
Identity = 320/368 (86.96%), Postives = 349/368 (94.84%), Query Frame = 1


Query: 38  VTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKP-AKSEENL-SQWERLYLPIDPG 97
           V P+A ++  S+ RR  +AETAA   +S++PLI  ++P AKSEE L S+WER+YLPIDPG
Sbjct: 40  VVPRACLQKPSLTRRHLLAETAA---ISVAPLILGIEPPAKSEEPLLSEWERVYLPIDPG 99

Query: 98  VVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGK 157
           VVLLDIAFVPDDL+HGFLLGTRQTI+ETKDGG TW PRSIPSAE+EDFNYRFNSISF+GK
Sbjct: 100 VVLLDIAFVPDDLSHGFLLGTRQTIMETKDGGNTWVPRSIPSAEDEDFNYRFNSISFKGK 159

Query: 158 EGWIVGKPAILLYTSDAGESWDRIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNK 217
           EGWIVGKP+ILLYTSDAGESW+RIPLSAQLPGD+VYIKATGEKSAEMVTDEGAIYVTSN+
Sbjct: 160 EGWIVGKPSILLYTSDAGESWERIPLSAQLPGDIVYIKATGEKSAEMVTDEGAIYVTSNR 219

Query: 218 GYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEP 277
           GYNW+AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEP
Sbjct: 220 GYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEP 279

Query: 278 GQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGI 337
           GQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL+LSKGTGISEDFEE+PVQSRGFGI
Sbjct: 280 GQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGISEDFEEIPVQSRGFGI 339

Query: 338 LDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGND 397
           LDVGYRSKEEAWAAGGSGVLL+TTNGGKTWTRDKAADNIAANLYSVKFI+D KGFVLGND
Sbjct: 340 LDVGYRSKEEAWAAGGSGVLLRTTNGGKTWTRDKAADNIAANLYSVKFIDDTKGFVLGND 399

Query: 398 GVLLQYLG 404
           GVLL++LG
Sbjct: 400 GVLLRFLG 404

[Close]

BLAST of CmaCh08G005010 vs. TAIR10
Match: AT5G23120.1 (AT5G23120.1 photosystem II stability/assembly factor, chloroplast (HCF136))

HSP 1 Score: 631.7 bits (1628), Expect = 3.1e-181
Identity = 307/392 (78.32%), Postives = 352/392 (89.80%), Query Frame = 1


Query: 15  SSSPRHSFTSLSQ---PQVQPQTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIA 74
           S SPR     +S    P+       S +P +S  + S +RRE + ++AA VSLSLS ++ 
Sbjct: 16  SVSPRFLSQRISHRLIPKASSSPPPSPSPSSSSSSLSFSRRELLYQSAA-VSLSLSSIVG 75

Query: 75  PVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWA 134
           P   A+++E LS+WER++LPIDPGVVLLDIAFVPD+ + GFLLGTRQT+LETKDGG TW 
Sbjct: 76  P---ARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWN 135

Query: 135 PRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIPLSAQLPGDMVY 194
           PRSIPSAEEEDFNYRFNSISF+GKEGWI+GKPAILLYT+DAGE+WDRIPLS+QLPGDMV+
Sbjct: 136 PRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVF 195

Query: 195 IKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNT 254
           IKAT +KSAEMVTDEGAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ 
Sbjct: 196 IKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSA 255

Query: 255 VNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGL 314
           VNRSPDGRYVAVSSRGNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL
Sbjct: 256 VNRSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 315

Query: 315 FLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAA 374
           +LSKGTGI+E+FEEVPVQSRGFGILDVGYRS+EEAWAAGGSG+LL+T NGGK+W RDKAA
Sbjct: 316 YLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAA 375

Query: 375 DNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           DNIAANLY+VKF++DKKGFVLGNDGVLL+Y+G
Sbjct: 376 DNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403

[Close]

BLAST of CmaCh08G005010 vs. NCBI nr
Match: gi|659122869|ref|XP_008461367.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucumis melo])

HSP 1 Score: 758.1 bits (1956), Expect = 8.0e-216
Identity = 377/408 (92.40%), Postives = 395/408 (96.81%), Query Frame = 1


Query: 1   MATLQQ-LLRPSW----FASSSPRHSFTSLSQPQVQPQTVNSVTPKASIKNSSINRREFV 60
           MATLQQ LL+PSW    FASSSPRHS   LSQPQ+ P+T++S +PKAS+ NSSINRR+FV
Sbjct: 1   MATLQQQLLKPSWTSSLFASSSPRHS---LSQPQLLPRTISSTSPKASLHNSSINRRQFV 60

Query: 61  AETAAAVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLG 120
           A+TAAAVSLSLSP IAPV+PAKSEE+LS+WERLYLPIDPGVVLLDIAFVPDDLNHGFLLG
Sbjct: 61  ADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLNHGFLLG 120

Query: 121 TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGES 180
           TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGES
Sbjct: 121 TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGES 180

Query: 181 WDRIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV 240
           W+RIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV
Sbjct: 181 WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV 240

Query: 241 SSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG 300
           SSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG
Sbjct: 241 SSGISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG 300

Query: 301 WRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL 360
           WRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL
Sbjct: 301 WRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL 360

Query: 361 LKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           LKTTNGG++WTRDKAADNIAANLYSVKFIN+KKGFVLGNDGVLLQYLG
Sbjct: 361 LKTTNGGRSWTRDKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 405

[Close]

BLAST of CmaCh08G005010 vs. NCBI nr
Match: gi|449436353|ref|XP_004135957.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucumis sativus])

HSP 1 Score: 756.5 bits (1952), Expect = 2.3e-215
Identity = 379/409 (92.67%), Postives = 395/409 (96.58%), Query Frame = 1


Query: 1   MATLQQ-LLRPSW----FASS-SPRHSFTSLSQPQVQPQTVNSVTPKASIKNSSINRREF 60
           MATLQQ LL+PSW    FASS SPRHS   LSQPQ+ P+T++S TPKAS+ NSSINRR F
Sbjct: 1   MATLQQQLLKPSWTSSLFASSTSPRHS---LSQPQLLPRTLSSTTPKASLHNSSINRRHF 60

Query: 61  VAETAAAVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLL 120
           VA+TAAAVSLSLSP IAPV+PAKSEE+LS+WERLYLPIDPGVVLLDIAFVPDD+NHGFLL
Sbjct: 61  VADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMNHGFLL 120

Query: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGE 180
           GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGE
Sbjct: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGE 180

Query: 181 SWDRIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240
           SW+RIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT
Sbjct: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240

Query: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300
           VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM
Sbjct: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300

Query: 301 GWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360
           GWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV
Sbjct: 301 GWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360

Query: 361 LLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           LLKTTNGG++WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Sbjct: 361 LLKTTNGGRSWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 406

[Close]

BLAST of CmaCh08G005010 vs. NCBI nr
Match: gi|703090427|ref|XP_010094078.1| (hypothetical protein L484_018094 [Morus notabilis])

HSP 1 Score: 672.5 bits (1734), Expect = 4.4e-190
Identity = 336/403 (83.37%), Postives = 367/403 (91.07%), Query Frame = 1


Query: 7   LLRPSWFA-----SSSPRHSFTSLSQPQVQPQTVNSVTPKASIKNSSINRREFVAETAAA 66
           LL+PS+ +     ++SPRH  +S   P+  P+  +S +  +S  +S + RR F+AET AA
Sbjct: 16  LLKPSFTSLFFNNTTSPRHFRSSQPPPRFIPKASSSSSSSSS--SSLLCRRRFIAET-AA 75

Query: 67  VSLSL-SPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 126
           VSLSL SP + PV+PAKSE+ LS+WER YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 76  VSLSLASPFLGPVQPAKSEDALSEWERCYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 135

Query: 127 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIP 186
           LETKDGG TW PRSIPSAE+EDFNYRFNSISF GKEGWIVGKPAILLYTSDAGE+W+RI 
Sbjct: 136 LETKDGGNTWVPRSIPSAEDEDFNYRFNSISFIGKEGWIVGKPAILLYTSDAGENWERIA 195

Query: 187 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 246
           LSAQLPGDMVYIKATGEK AEMVTD+GAIYVTSNKGYNW+AAVQETVSATLNRTVSSGIS
Sbjct: 196 LSAQLPGDMVYIKATGEKGAEMVTDQGAIYVTSNKGYNWRAAVQETVSATLNRTVSSGIS 255

Query: 247 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 306
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADG
Sbjct: 256 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADG 315

Query: 307 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 366
           GLWLLVRGGGLFLSKGTGI+EDFEEV VQSRGFGILDVGYRS+EEAWAAGGSG+LL+TTN
Sbjct: 316 GLWLLVRGGGLFLSKGTGITEDFEEVAVQSRGFGILDVGYRSQEEAWAAGGSGILLRTTN 375

Query: 367 GGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           GGK+W RDKAADNIAANLYSVKFI+DKKGFVLGNDGVLL+YLG
Sbjct: 376 GGKSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 415

[Close]

BLAST of CmaCh08G005010 vs. NCBI nr
Match: gi|719963529|ref|XP_010249997.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 669.5 bits (1726), Expect = 3.8e-189
Identity = 323/363 (88.98%), Postives = 347/363 (95.59%), Query Frame = 1


Query: 41  KASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLD 100
           +AS+   S+NRR+F+AET AAVSLSL+PL   V+PAKSEE LS+WER+YLPIDPGVVLLD
Sbjct: 40  RASLHQPSMNRRQFIAET-AAVSLSLAPLSGFVEPAKSEEALSEWERVYLPIDPGVVLLD 99

Query: 101 IAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIV 160
           IAFVPD LNHGFLLGTRQTILETKDGG TW PRSIPSAE+EDFNYRFNSISF+ KEGWIV
Sbjct: 100 IAFVPDQLNHGFLLGTRQTILETKDGGNTWVPRSIPSAEDEDFNYRFNSISFRAKEGWIV 159

Query: 161 GKPAILLYTSDAGESWDRIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWK 220
           GKPAILLYTSDAGESW+RIPLSAQLPGD+VYIKATGE SAEMVTD+GAIYVTSN+GYNW+
Sbjct: 160 GKPAILLYTSDAGESWERIPLSAQLPGDIVYIKATGENSAEMVTDQGAIYVTSNRGYNWR 219

Query: 221 AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFW 280
           AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQP+W
Sbjct: 220 AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGNYVAVSSRGNFYLTWEPGQPYW 279

Query: 281 QPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGY 340
           QPHNRA+ARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI+E+F+EVPVQSRGFGILDVGY
Sbjct: 280 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFDEVPVQSRGFGILDVGY 339

Query: 341 RSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQ 400
           RSK+EAWAAGGSGVLL+TTNGGKTW RDKAADNIAANLYSVKFIND KGFVLGNDGVLL+
Sbjct: 340 RSKDEAWAAGGSGVLLRTTNGGKTWIRDKAADNIAANLYSVKFINDNKGFVLGNDGVLLR 399

Query: 401 YLG 404
           YLG
Sbjct: 400 YLG 401

[Close]

BLAST of CmaCh08G005010 vs. NCBI nr
Match: gi|823159965|ref|XP_012479823.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Gossypium raimondii])

HSP 1 Score: 666.4 bits (1718), Expect = 3.2e-188
Identity = 335/401 (83.54%), Postives = 361/401 (90.02%), Query Frame = 1


Query: 8   LRPSWFASSSPRHSFTSLSQPQVQPQTVNSVTPKASIKNSS-----INRREFVAETAAAV 67
           L PS  +   PR     LS P  +  +  S+   +S  +SS     +NRR+ +++TA+ +
Sbjct: 16  LIPSLTSLFPPRLLHRPLSLPHSRFISKASLHHPSSPSSSSSPPSLVNRRQIISQTAS-I 75

Query: 68  SLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 127
           SLSL+ L +   PAKSEE LS+WER+YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE
Sbjct: 76  SLSLATLSSLPLPAKSEEVLSEWERVYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 135

Query: 128 TKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIPLS 187
           TKDGG TW  RSIPSAE+EDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGESW+RIPLS
Sbjct: 136 TKDGGNTWTQRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLS 195

Query: 188 AQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGA 247
           AQLPGDMVYIKATGEKSAEMVTD+GAIYVTSN+GYNW+AAVQETVSATLNRTVSSGISGA
Sbjct: 196 AQLPGDMVYIKATGEKSAEMVTDQGAIYVTSNRGYNWRAAVQETVSATLNRTVSSGISGA 255

Query: 248 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 307
           SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL
Sbjct: 256 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 315

Query: 308 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG 367
           WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRS+EEAWAAGGSGVLL+TTNGG
Sbjct: 316 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGVLLRTTNGG 375

Query: 368 KTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           K WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLL+YLG
Sbjct: 376 KNWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLRYLG 415

The following BLAST results are available for this feature:

BLAST of CmaCh08G005010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
P2SAF_ARATH	5.4e-180	78.32	Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis th...	[more]
P2SAF_ORYSJ	5.6e-177	78.06	Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa s...	[more]
P2SAF_GUITH	1.3e-96	46.41	Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia the...	[more]
YC48L_SYNY3	5.8e-81	48.74	Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr2034 PE...	[more]
YC48L_THEEB	1.7e-80	44.02	Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=...	[more]

BLAST of CmaCh08G005010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5Y1_CUCSA	1.6e-215	92.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420730 PE=4 SV=1	[more]
W9R3A0_9ROSA	3.1e-190	83.37	Uncharacterized protein OS=Morus notabilis GN=L484_018094 PE=4 SV=1	[more]
A0A0D2SL22_GOSRA	2.2e-188	83.54	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G210500 PE=4 SV=1	[more]
A0A061E463_THECC	2.5e-187	82.29	Photosystem II stability/assembly factor, chloroplast (HCF136) isoform 1 OS=Theo...	[more]
D7T9G8_VITVI	2.7e-186	86.96	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02150 PE=4 SV=...	[more]

BLAST of CmaCh08G005010 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23120.1	3.1e-181	78.32	photosystem II stability/assembly factor, chloroplast (HCF136)	[more]

BLAST of CmaCh08G005010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122869\|ref\|XP_008461367.1\|	8.0e-216	92.40	PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucum...	[more]
gi\|449436353\|ref\|XP_004135957.1\|	2.3e-215	92.67	PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucum...	[more]
gi\|703090427\|ref\|XP_010094078.1\|	4.4e-190	83.37	hypothetical protein L484_018094 [Morus notabilis]	[more]
gi\|719963529\|ref\|XP_010249997.1\|	3.8e-189	88.98	PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nelum...	[more]
gi\|823159965\|ref\|XP_012479823.1\|	3.2e-188	83.54	PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Gossy...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016705	Ycf48/Hcf136
IPR028203	PSII_CF48-like_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0008150	biological_process
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0010218	response to far red light
biological_process	GO:0010114	response to red light
biological_process	GO:0009637	response to blue light
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0010304	PSII associated light-harvesting complex II catabolic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0009902	chloroplast relocation
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009533	chloroplast stromal thylakoid
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G005010.1	CmaCh08G005010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016705	Photosynthesis system II assembly factor Ycf48/Hcf136	PIR	PIRSF017875	Photosystem_II_Ycf48-like	coord: 45..403 score: 3.8E
IPR028203	Photosynthesis system II assembly factor Ycf48/Hcf136-like domain	PFAM	PF14870	PSII_BNR	coord: 80..401 score: 6.8E
None	No IPR available	GENE3D	G3DSA:2.130.10.140		coord: 289..395 score: 2.2E-20coord: 77..229 score: 2.2
None	No IPR available	PANTHER	PTHR32010	FAMILY NOT NAMED	coord: 26..403 score: 5.4E
None	No IPR available	PANTHER	PTHR32010:SF6	PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC	coord: 26..403 score: 5.4E
None	No IPR available	unknown	SSF110296	Oligoxyloglucan reducing end-specific cellobiohydrolase	coord: 90..402 score: 1.96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G005010	Cucsa.128310	Cucumber (Gy14) v1	cgycmaB0348
CmaCh08G005010	Cla015198	Watermelon (97103) v1	cmawmB856
CmaCh08G005010	Csa7G420730	Cucumber (Chinese Long) v2	cmacuB914
CmaCh08G005010	MELO3C023596	Melon (DHL92) v3.5.1	cmameB824
CmaCh08G005010	ClCG09G004540	Watermelon (Charleston Gray)	cmawcgB786
CmaCh08G005010	CSPI07G18770	Wild cucumber (PI 183967)	cmacpiB934
CmaCh08G005010	CmoCh08G004940	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G005010	CmoCh17G009620	Cucurbita moschata (Rifu)	cmacmoB896
CmaCh08G005010	Lsi02G025310	Bottle gourd (USVL1VR-Ls)	cmalsiB822
CmaCh08G005010	Cp4.1LG12g06360	Cucurbita pepo (Zucchini)	cmacpeB902
CmaCh08G005010	Cp4.1LG17g07750	Cucurbita pepo (Zucchini)	cmacpeB917
CmaCh08G005010	MELO3C023596.2	Melon (DHL92) v3.6.1	cmamedB922
CmaCh08G005010	CsaV3_7G030600	Cucumber (Chinese Long) v3	cmacucB1084
CmaCh08G005010	Cla97C09G166890	Watermelon (97103) v2	cmawmbB940
CmaCh08G005010	Bhi09G000606	Wax gourd	cmawgoB1128
CmaCh08G005010	CsGy7G017210	Cucumber (Gy14) v2	cgybcmaB973
CmaCh08G005010	Carg13414	Silver-seed gourd	carcmaB0628
CmaCh08G005010	Carg07081	Silver-seed gourd	carcmaB0148

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G005010	CmaCh17G009900	Cucurbita maxima (Rimu)	cmacmaB382

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G005010	Cucumber (Chinese Long) v3	cmacucB1052
CmaCh08G005010	Watermelon (97103) v2	cmawmbB910
CmaCh08G005010	Wax gourd	cmawgoB1088
CmaCh08G005010	Cucurbita maxima (Rimu)	cmacmaB293
CmaCh08G005010	Cucurbita maxima (Rimu)	cmacmaB440
CmaCh08G005010	Cucurbita moschata (Rifu)	cmacmoB879
CmaCh08G005010	Cucurbita moschata (Rifu)	cmacmoB905
CmaCh08G005010	Wild cucumber (PI 183967)	cmacpiB904
CmaCh08G005010	Cucumber (Chinese Long) v2	cmacuB886
CmaCh08G005010	Melon (DHL92) v3.5.1	cmameB842
CmaCh08G005010	Watermelon (Charleston Gray)	cmawcgB792
CmaCh08G005010	Watermelon (97103) v1	cmawmB862
CmaCh08G005010	Cucurbita pepo (Zucchini)	cmacpeB922
CmaCh08G005010	Cucurbita pepo (Zucchini)	cmacpeB927
CmaCh08G005010	Bottle gourd (USVL1VR-Ls)	cmalsiB831
CmaCh08G005010	Cucumber (Gy14) v2	cgybcmaB456
CmaCh08G005010	Melon (DHL92) v3.6.1	cmamedB943
CmaCh08G005010	Silver-seed gourd	carcmaB1060
CmaCh08G005010	Silver-seed gourd	carcmaB1136