Cp4.1LG17g07750.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g07750.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionYcf48-like protein
LocationCp4.1LG17 : 5675665 .. 5681849 (-)
Sequence length2893
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCATCTTGCAGTTTGAGACGCTTCAAAATCACCCGCGAACGGGCTGAGAGAACTTCCTTCTGGATAATGTGAGAGATAAGAGGTCGACCAGCACTGCCCTGCTCCTTTCCTTCTCTCTTCAATGGCGACTCTGCAACAACTCCTTAGACCTTCATGCTTCGCTTCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAACTTCAGCCACGAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTCGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCCGTAAAACCGGCGAAGTCCGAAGAAAATCTGTCGCAGTGGGCGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTAGTTCCGATAGCTTTGGTTCCTTTTTCTGCAGAAATCAACGAATAATGCTGGAGAATTTTGAGTTTGTTTTTGTTTTTCTACTACGAATTATTGTGTTTCGGAAACTCACTAGTCACAGCAATTAATTGTTGGAAACATCTGAAGTTTGGGAGGATTTGTACACTGAAAAGCTATTAGGCAGTACAGTTGTTTGTTCAATTATCTTCTTTAAAGGCTTGAATTATGTTCTACTTAAGTTAAGCTGGTCTTCATTTCCAATTATTGTAAAATCAGTTTCTTCATCAATAATTCTTTTGGGGGGTGGGGAGTTTGAGCTTTGATGTGTAATTGAAATCTTGGAAAGAAATTTCTCATTATCATTTTTTCAAGTGATTTTATCTACCTTGTTTGTGCTTACGGATTCTGTCAAGGCTTCTGAATGTTGTAATTTGTAATTTCTCGTTCGTACAGTTACGGTTTCAAGTTCCTTCCGCCAATATAATGCCACGAAACCATTTGACACTTTCAGCCCACTGCAGGTTTCCTTTTGGGGACACGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATCCCCTCAGCTGAAGAAGAAGACTTTAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATCGTTGGAAAGCCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGAAAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTAAACTACTAAATTATATAATCGATGAGGAATTCATTGTATGGCAGTGCTTGAACCTTAGGTTGTTCTATTTTCAGATCTTGCTATTTTATAGATTTTGCTTTACCCATTGTAGTTATAAGGCTCATTAACAATAGTTAAACGTGGAAAGACCGTAAATAAGGGATTATTCACAGCTCTAAATTAAGATGGAAATTTTGGTTCTTTTAACATATCTAGAGCTATAAATTGATCTGTTGTTTTCTGCCAGAAAGTGCTTTTATTTAACACTAGAGTGGTTGATCCTATTATAAAACTTCAGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGGTGAGCTTCAGCAGGGGAAAATTTCCATTCTATTAGGTTTAAGATTAAAGATTCGTTGTTCGGAATTTAACCTTGAAATCATTCCGGAATAGTTGATAGGCTGATAACTGATGAGATTTGACTGGCAGCTTGTGGCAGGAAATCATGGGCCAGACACCAGTGTTCACTAGTTTAGCTCATTGAAAGAAAAAATTTAGTCCCGATTACGTGATGCTAATTGGTTTTCTTTACCTTTTTCAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACAGTCAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGGTTTAACTTTTATATTTCTCTCTCTATCTCCCTTCTTCTAACCGTGTTACTCTGAACTGGCTTACTCTGAACTTTTATATTTCATTAAATCTTGACTTTATTTGCTCGATCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGAGTAAGTGAAATCGATGACCGTTCCTTTGTGTTTCTACTTTCTAGTGAAGCCACCCTAATTGAAAATATGAAAAATGGTTTAGAGGTGCAATGCGGTTTCATTTTAACCCTTACCAAAAGCCATATCCCTCCTTCTTTTACTAGTTACTCGAGCATTGAATATTGTACAATAAGTTTTCATCTTAGACTTGGGGATGCATAGTAATCCAATGACGGAATCCTTTAATCGCATTGCTTTTCAGATATATTATCATTAGAAACTTTTGTGGTTTTTTTTCTTAAACAAAATCATGAAAACGTCGTAAGTGAAAACTAATTTTTCATCTTATTCATCATTAACTTGAAACCAGAGGGCAAGTAAATTCTACATTGTCATTCTATAGGTTATATCTATGCTGTTGCTTCCCAAAATTTCAGCTAGACCTCTCAGCCGACTCCCGACTCCTGTTAAATATTAACTGCTTGTTGAATTCATGATGTTTCTCATAACAGATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGATGTTGGTTATCGTTCAAAGGTAAGTTCTTGAAGACTCCTGCTGATTTGTGATTGAGATAGAAATATCATATCTTTTAGTTATAAATAGATGAAATTGACCTTCTTGGAGGGGGTACTCAATGGATCTGGTTGATTTGTGTAGCAGATCACATAAGGGAAGGGCCAGACAGAAGCCTAAAATGTGATTATTTAGTTTTTCATTGACATGCTATATGTTGGAACTGAAATATACAGTACTAAAAGTGCACTGTGCAGCACAAATTATTCATTCCAGCAAGTATGAATGAGAGAAAAACTAAAAGATTCATTTTTTAAAGGATCAGTTTGTGCATGAAATATAGCTGGAAAAGCCTCTGTTTTTGTGACGATGAGAAAAAAATGAATTGTTTTTAAGGCATTTTAATTAGCCTGGTGCATATTTATGAAATAAGGTGTGGGTATGTTCTACATCTTCCCCGGAGTAGTTAGATTTCTCATTTAATCACATACCTTCCTGCAATTCTCAACGTGAGGAATGACGGTACTAACATAGAACTTGTACGATCTTGTGTTCATAATAAATAATTGCATTGTCCAAGATACCTTGAACTTGTAGTCGGAAGTCATGTATATATTGTGCAAAGTGTAGTGCATATCTCATTATCCCTTGGCAATGAATATATAATCTGTATGCTGAATTTGAAGACACATCCTTTTACGACCTTACTTAAACAAGATCAGTTCTATAGGTTGTACATTTGTGTCGTTGAGTTCTAAAGATTCGTCATTTTGGATTTATCATAACCGCCAGACAAAAACGAAGTCATCCCTTTACCCAAAATCGATCATCGCCTTGGTGAATATTTTTTACAGTTTTTCTTGTTTCTGGTGTGAGTTGTACAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACTTATACTCTGTAAAGTGAGTATCACCATACCGTGAAATTAGTCTGTTCCTTTATAAATTCTCTTTTTATGGCTCTCCCTTAGGTGAGTAATGTGTAAGAAGAAGAATCAAAGCTCTATTCCTTGCTTCTTCTTTTGGGGTGGGTTTGGGATGAATTTTGGAAGGTAAAAAATGTTTTTAACCTATTTGGAAAGTTTTTGTGGTGTTCAGTTTGATAATTGAAAATAATTTAAAATTTTTTAAAAACACTTGAAGAATATTTCTTTCAAAAGTATGCATAAAAGGGGTGCCTTCACTGTTCTTTCTCATTTTGAAAAGTCACAATCAATATGGCTGCAAACACAATGCAATTGTGCTATACTTCACTTTCACATATTCTCTTATAATCAATCTATTTACATCTCCGCAGGTTTATAAACGATAAGAAAGGTTTTGTACTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGAACTTTGAGATTTTACTCGGTAATTAATTCCTCTTCCTTCTCTTCTTTGATTTTTCTTTTGCCATCTCAGGCACTTGCTGTGTGTAAATGTAATTTTTTTAACCCTACATTCCAAACTGTTCTAAAATTATATGCAGAATATAAAAGCAGTAAAAGGGTAACCTTTAAGAACATGTATTATTTTGTTTCTTGAAATTTGTTATAACTCAAAAATATTCCAGAAAGGCTATTTATAAACTTTATTTTGTGTAGAGGCTGGTATTTGGGATTGCTTGAAAATCAAAATTTCCGTTTACTGCTTGATTATGTTGTAGGGTTGCTGAATTGTTGCAACATTGTTCTCATTGGTGTATCAAAGATTCAGGTTTTGGCATTTTTCTTTTTCAGGTTACAGAATCAGATTTTATATGATGCTTGCGATGGAAATTTTGTATCATTAAATAACAGCTTTGCGTTCTAGATTTCGACGATGGGACGAGGTGCTAATGTTCCCCAGTTACATATTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGCATTTCTGAAGGTCAAGAACTTTTAGCAATGCATTGATTAGAAAGAATCCAGGTCGTGAATAGTTCTTTCAACTCTTGTTAATACCTGTAATCTAAACGTATACCTGTTCAAGTGCCCATTGTTGATTGCCAAAAGAAAAGGGATGAATTTGGAAGATACTAATACATTTTTATGTCCCAAATTTTCTTATGTGCTTTATCATTTCACGAAAATTTACAGGATCATAGTTCAAAAATTACAAGTCAAGAATGTTTTCTGAACATGCTTGCGTTAGAAAAGAAAAATCAATAACAATATAAGGAAACTCAAAAGGTGAAAATAAAATATAAAGAAACTAATATTCATGATAAACACAGCTATGATATGCGTGAATGAATGTCAAATTCTTATAAAAGCATCAGAAATAGTAACTGCCACAATAAACAAATCCAACAAGGTAGGGTAGCACCAGCAAATTGCCAAAATATGAACTTATAGCAATTGTTAACGAAGGAAAGAAAAATGAACATGGAGTTAAAACAAGTGATAAACAGAAAAATGGAAGTGGCTAGCTAGTTGTTCCATTATAAACTGATGCATTAAACAAAATTCAACAGGTAAAAGTGTTCACAAATATCAGAATAACCAAACAAAAAGCATAGGGCAGAAAAAACCCACAATTTTGGCTCCCTAAAAACCAATATATAGTGAATGACAATGTTAAAGCATCTAAAAAAGTGAAGTTCCCTTTCCCTTCTTGTCTCCACCAATCTCAAAATGCTTGCATCTCTGCATGAATGTGAAGGTAGGCATTAATGAAACAGAAATTGAAAGACAATGGTATTAAGTTTCCATCCAAGAAGAGTTCACGTTAGATAATACAAACCTTAATGGCATGCTGTGACACATGCTTGCAACCCTGGCATTGCAACCTCAGCACAATCTTCTTGGTAGTTTTTGCCTGGCAGGGGGAATTAAAGTTCTCATGATTATTTATTCGAGGGAAAATGAGCAAAATGTAGTTTGAGTAGATATGGAAGGGATTTTCACCTTCTTGTGAAAGACGGGCTTGGTCTGGCCTCCGTATCCTGATTGTTTACGATCATAACGACGCTTTCCTTGGGCAGCAAGACTGTCCTTACCCTTTTTGTACTGGGTAACCTTGTGCAGGGTATGCTTTTTGCATTCCTTGCTCTTGCAGTAAGTCTTCTTCGTCTTGGGAACGTTCACCTAATTAGTAGAAAAATTCAATATCATTTCACATAACAGAGAATAATTTTAAGATCATAAATTAGAACAACTCCATGAGAAATATAAAAAACTTCGAAATTAGCTGAATATCTGGCAGAGTAAAACATAATTGGAAATTATACAAAAAGTGCTTGAACAGAGAAACCAGAGCTAA

mRNA sequence

TTTTTCATCTTGCAGTTTGAGACGCTTCAAAATCACCCGCGAACGGGCTGAGAGAACTTCCTTCTGGATAATGTGAGAGATAAGAGGTCGACCAGCACTGCCCTGCTCCTTTCCTTCTCTCTTCAATGGCGACTCTGCAACAACTCCTTAGACCTTCATGCTTCGCTTCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAACTTCAGCCACGAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTCGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCCGTAAAACCGGCGAAGTCCGAAGAAAATCTGTCGCAGTGGGCGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTTCCTTTTGGGGACACGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATCCCCTCAGCTGAAGAAGAAGACTTTAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATCGTTGGAAAGCCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGAAAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACAGTCAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGAATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGATGTTGGTTATCGTTCAAAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACTTATACTCTGTAAAGTTTATAAACGATAAGAAAGGTTTTGTACTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGAACTTTGAGATTTTACTCGGTTACAGAATCAGATTTTATATGATGCTTGCGATGGAAATTTTGTATCATTAAATAACAGCTTTGCGTTCTAGATTTCGACGATGGGACGAGGTGCTAATGTTCCCCAGTTACATATTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGCATTTCTGAAGGTCAAGAACTTTTAGCAATGCATTGATTAGAAAGAATCCAGGTCGTGAATAGTTCTTTCAACTCTTGTTAATACCTGTAATCTAAACGTATACCTGTTCAAGTGCCCATTGTTGATTGCCAAAAGAAAAGGGATGAATTTGGAAGATACTAATACATTTTTATGTCCCAAATTTTCTTATGTGCTTTATCATTTCACGAAAATTTACAGGATCATAGTTCAAAAATTACAAGTCAAGAATGTTTTCTGAACATGCTTGCGTTAGAAAAGAAAAATCAATAACAATATAAGGAAACTCAAAAGGTGAAAATAAAATATAAAGAAACTAATATTCATGATAAACACAGCTATGATATGCGTGAATGAATGTCAAATTCTTATAAAAGCATCAGAAATAGTAACTGCCACAATAAACAAATCCAACAAGGTAGGGTAGCACCAGCAAATTGCCAAAATATGAACTTATAGCAATTGTTAACGAAGGAAAGAAAAATGAACATGGAGTTAAAACAAGTGATAAACAGAAAAATGGAAGTGGCTAGCTAGTTGTTCCATTATAAACTGATGCATTAAACAAAATTCAACAGGTAAAAGTGTTCACAAATATCAGAATAACCAAACAAAAAGCATAGGGCAGAAAAAACCCACAATTTTGGCTCCCTAAAAACCAATATATAGTGAATGACAATGTTAAAGCATCTAAAAAAGTGAAGTTCCCTTTCCCTTCTTGTCTCCACCAATCTCAAAATGCTTGCATCTCTGCATGAATGTGAAGGTAGGCATTAATGAAACAGAAATTGAAAGACAATGGTATTAAGTTTCCATCCAAGAAGAGTTCACGTTAGATAATACAAACCTTAATGGCATGCTGTGACACATGCTTGCAACCCTGGCATTGCAACCTCAGCACAATCTTCTTGGTAGTTTTTGCCTGGCAGGGGGAATTAAAGTTCTCATGATTATTTATTCGAGGGAAAATGAGCAAAATGTAGTTTGAGTAGATATGGAAGGGATTTTCACCTTCTTGTGAAAGACGGGCTTGGTCTGGCCTCCGTATCCTGATTGTTTACGATCATAACGACGCTTTCCTTGGGCAGCAAGACTGTCCTTACCCTTTTTGTACTGGGTAACCTTGTGCAGGGTATGCTTTTTGCATTCCTTGCTCTTGCAGTAAGTCTTCTTCGTCTTGGGAACGTTCACCTAATTAGTAGAAAAATTCAATATCATTTCACATAACAGAGAATAATTTTAAGATCATAAATTAGAACAACTCCATGAGAAATATAAAAAACTTCGAAATTAGCTGAATATCTGGCAGAGTAAAACATAATTGGAAATTATACAAAAAGTGCTTGAACAGAGAAACCAGAGCTAA

Coding sequence (CDS)

ATGGCGACTCTGCAACAACTCCTTAGACCTTCATGCTTCGCTTCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAACTTCAGCCACGAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTCGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCCGTAAAACCGGCGAAGTCCGAAGAAAATCTGTCGCAGTGGGCGAGACTTTACCTTCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTTCCTTTTGGGGACACGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATCCCCTCAGCTGAAGAAGAAGACTTTAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATCGTTGGAAAGCCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGAAAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACAGTCAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGAATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGATGTTGGTTATCGTTCAAAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACTTATACTCTGTAAAGTTTATAAACGATAAGAAAGGTTTTGTACTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGA

Protein sequence

MATLQQLLRPSCFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Homology
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BLAST of Cp4.1LG17g07750.1 vs. Swiss-Prot
Match: P2SAF_ARATH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1)

HSP 1 Score: 627.1 bits (1616), Expect = 1.3e-178
Identity = 305/392 (77.81%), Postives = 351/392 (89.54%), Query Frame = 1 

Query: 15  SSSPRHSFTSLSQ---PQLQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIA 74
           S SPR     +S    P+       S +P +S  + S +RRE + ++AA VSLSLS ++ 
Sbjct: 16  SVSPRFLSQRISHRLIPKASSSPPPSPSPSSSSSSLSFSRRELLYQSAA-VSLSLSSIVG 75

Query: 75  PVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWA 134
           P   A+++E LS+W R++LPIDPGVVLLDIAFVPD+ + GFLLGTRQT+LETKDGG TW 
Sbjct: 76  P---ARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWN 135

Query: 135 PRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVY 194
           PRSIPSAEEEDFNYRFNSISF+GKEGWI+GKPAILLYT+DAGE+W+RIPLS+QLPGDMV+
Sbjct: 136 PRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVF 195

Query: 195 IKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNT 254
           IKAT +KSAEMVTDEGAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ 
Sbjct: 196 IKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSA 255

Query: 255 VNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGL 314
           VNRSPDGRYVAVSSRGNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL
Sbjct: 256 VNRSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 315

Query: 315 FLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAA 374
           +LSKGTGI+E+FEEVPVQSRGFGILDVGYRS+EEAWAAGGSG+LL+T NGGK+W RDKAA
Sbjct: 316 YLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAA 375

Query: 375 DNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           DNIAANLY+VKF++DKKGFVLGNDGVLL+Y+G
Sbjct: 376 DNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403

[Close]
BLAST of Cp4.1LG17g07750.1 vs. Swiss-Prot
Match: P2SAF_ORYSJ (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1)

HSP 1 Score: 620.2 bits (1598), Expect = 1.6e-176
Identity = 307/397 (77.33%), Postives = 338/397 (85.14%), Query Frame = 1 

Query: 33  RTVNSVTPKASIKNSSINRREFVAETA-AAVSLSLSPLIAPVKP---AKSEENLSQWARL 92
           R    + P+A   + S  RR F+A+TA A+ + ++ PL+ P  P   A    +LS+W R+
Sbjct: 20  RRCRLLVPRAHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQPPSLSEWERV 79

Query: 93  YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 152
            LPIDPGVVLLDIAFVPDD +HGFLLGTRQTILETK+GG TW PRSIPSAE+EDFNYRFN
Sbjct: 80  LLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDEDFNYRFN 139

Query: 153 SISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 212
           S+SF GKEGWI+GKPAILL+TSDAG+SWERIPLSAQLPG+MVYIKATGE+SAEMVTDEGA
Sbjct: 140 SVSFMGKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQSAEMVTDEGA 199

Query: 213 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 272
           IYVTSN+GYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN
Sbjct: 200 IYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 259

Query: 273 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTG---------- 332
           FYLTWEPGQPFWQPHNRA+ARRIQNMGWRADGGLWLLVRGGGLFLSKG+G          
Sbjct: 260 FYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGFQFFYRGLND 319

Query: 333 ------------ISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWT 392
                       I+EDFEE  VQSRGFGILDVGYRSK+EAWAAGGSGVLLKTTNGGKTW 
Sbjct: 320 AHAISYLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWV 379

Query: 393 RDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           RDKAADNIAANLYSVKF+ D KG+VLGNDGVLL+Y+G
Sbjct: 380 RDKAADNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416

[Close]
BLAST of Cp4.1LG17g07750.1 vs. Swiss-Prot
Match: P2SAF_GUITH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia theta GN=hcf136 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.3e-96
Identity = 168/362 (46.41%), Postives = 246/362 (67.96%), Query Frame = 1 

Query: 49  INRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDL 108
           INR +F+       +  L P +  + P  +  N + W ++ LP+D   VL DI F   + 
Sbjct: 42  INRTKFI-------NYLLYPTLTSLYPKFTHANTTSWTKVDLPVDS--VLFDIEFTDPEC 101

Query: 109 NHGFLLGTRQTILETKDGGRTWAPRSIPSAE-EEDFNYRFNSISFQGKEGWIVGKPAILL 168
            HG+L+G++ T LET DGG TW PR+  + + +E+  YRF +ISF+G+EGW++GKPAI+L
Sbjct: 102 KHGWLVGSKGTFLETDDGGNTWVPRTFANLDPDEELTYRFENISFEGQEGWVIGKPAIIL 161

Query: 169 YTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETV 228
           YT D G++W R+P+S +LPG+   IKA G +SAE+ T  GAIYVT+N G NWKA V+ET+
Sbjct: 162 YTKDGGKTWFRVPVSPKLPGEPCLIKALGSESAELTTTSGAIYVTNNAGRNWKAQVKETI 221

Query: 229 SATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAI 288
            +TLNRT+SSG+SGASY+TG    V R+ +G+Y+A+SSRGNFYLTWEPGQ FW P  R  
Sbjct: 222 DSTLNRTISSGVSGASYFTGNVINVIRNSEGKYLAISSRGNFYLTWEPGQDFWIPRARET 281

Query: 289 ARRIQNMGWRADG---GLWLLVRGGGLFLSKGT----GISE-DFEEVPVQSRGFGILDVG 348
           +RRIQ+MG+  +    G+W+  RGGGL +S        IS  +FE + +++ G+GILD  
Sbjct: 282 SRRIQSMGFIQNDNQKGIWMSTRGGGLSVSTKNFDFESISSFNFENIDIKTGGYGILDAA 341

Query: 349 YRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLL 402
           + + ++ W   G G++  +T+ GK WT+    D ++ NLY +KF+N+ KGF+LG++G+LL
Sbjct: 342 FVNDKDIWIICGGGIVYNSTDKGKNWTKVDGIDKLSGNLYKIKFVNNNKGFILGSNGLLL 394

[Close]
BLAST of Cp4.1LG17g07750.1 vs. Swiss-Prot
Match: YC48L_SYNY3 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr2034 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 9.9e-81
Identity = 155/318 (48.74%), Postives = 201/318 (63.21%), Query Frame = 1 

Query: 85  WARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFN 144
           W  + L  D      DIAF  +D NHG+L+GT++TI ET DGG TW  + I   EE+   
Sbjct: 40  WQEIALETDS--TFADIAFT-EDPNHGWLVGTKETIFETTDGGDTWEQKLIDLGEEK--- 99

Query: 145 YRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVT 204
             F+++SF G EGWI GKP+ILL+T+D G++W RIPLS +LPG    I A G ++AEM+T
Sbjct: 100 ASFSAVSFSGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPGAPYSIIALGPQTAEMIT 159

Query: 205 DEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVS 264
           D GAIY T+N G NWKA V+  V                   G   T+ RS DGRYVAVS
Sbjct: 160 DLGAIYKTTNGGKNWKALVEGAV-------------------GVARTIQRSTDGRYVAVS 219

Query: 265 SRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFE 324
           +RGNFY TW PGQ  W PHNR  +RR+Q MG+  DG LWLL RGG L  S      E  +
Sbjct: 220 ARGNFYSTWAPGQTEWTPHNRNSSRRLQTMGYGKDGQLWLLARGGQLQFSTDPDAEEWSD 279

Query: 325 EVPVQSRG-FGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKF 384
            +  Q +G +G+LD+ +R+ EE W AG SG LL + +GG+TW +D   ++I ANLY V F
Sbjct: 280 VIAPQDKGSWGLLDLSFRTPEEVWVAGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVF 332

Query: 385 INDKKGFVLGNDGVLLQY 402
           ++ +KGFVLG DG+LL+Y
Sbjct: 340 LSPEKGFVLGQDGILLKY 332

[Close]
BLAST of Cp4.1LG17g07750.1 vs. Swiss-Prot
Match: YC48L_THEEB (Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=1 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.1e-79
Identity = 150/343 (43.73%), Postives = 210/343 (61.22%), Query Frame = 1 

Query: 62  VSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTIL 121
           VSLS   L  P        + + W  + LP      +LD++F+  D +HG+L+G   T++
Sbjct: 30  VSLSTPALAIPAL------DYNPWEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLM 89

Query: 122 ETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPL 181
           ET+DGG+TW PR++     +   YRFNS+SFQG EGWIVG+P I+L+T+D G+SW +IPL
Sbjct: 90  ETRDGGQTWEPRTLVLDHSD---YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPL 149

Query: 182 SAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISG 241
             +LPG    IKA G  SAEM+T+ GAIY T + G NW+A VQE +              
Sbjct: 150 DPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAI-------------- 209

Query: 242 ASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGG 301
                G    +NRSP G YVAVSSRG+FY TWEPGQ  W+PHNR  +RR+ NMG+  DG 
Sbjct: 210 -----GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR 269

Query: 302 LWLLVRGGGLFLSKGTGISEDFEEV--PVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTT 361
           LW++V GG +  S     SE++ E+  P++    G LD+ YR+  E W AGG+G LL + 
Sbjct: 270 LWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQ 329

Query: 362 NGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYL 403
           +GG+TW +D     + +N Y + F +  +GF+LG  G+LL+Y+
Sbjct: 330 DGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 339

[Close]
BLAST of Cp4.1LG17g07750.1 vs. TrEMBL
Match: A0A0A0K5Y1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420730 PE=4 SV=1)

HSP 1 Score: 753.1 bits (1943), Expect = 1.8e-214
Identity = 380/409 (92.91%), Postives = 393/409 (96.09%), Query Frame = 1 

Query: 1   MATLQQ-LLRPS----CFASS-SPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREF 60
           MATLQQ LL+PS     FASS SPRHS   LSQPQL PRT++S TPKAS+ NSSINRR F
Sbjct: 1   MATLQQQLLKPSWTSSLFASSTSPRHS---LSQPQLLPRTLSSTTPKASLHNSSINRRHF 60

Query: 61  VAETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLL 120
           VA+TAAAVSLSLSP IAPV+PAKSEE+LS+W RLYLPIDPGVVLLDIAFVPDD+NHGFLL
Sbjct: 61  VADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMNHGFLL 120

Query: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGE 180
           GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGE
Sbjct: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGE 180

Query: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240
           SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT
Sbjct: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240

Query: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300
           VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM
Sbjct: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300

Query: 301 GWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360
           GWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV
Sbjct: 301 GWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360

Query: 361 LLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           LLKTTNGG++WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Sbjct: 361 LLKTTNGGRSWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 406

[Close]
BLAST of Cp4.1LG17g07750.1 vs. TrEMBL
Match: W9R3A0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018094 PE=4 SV=1)

HSP 1 Score: 671.0 bits (1730), Expect = 9.0e-190
Identity = 336/403 (83.37%), Postives = 365/403 (90.57%), Query Frame = 1 

Query: 7   LLRPSCFA-----SSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAAA 66
           LL+PS  +     ++SPRH  +S   P+  P+  +S +  +S  +S + RR F+AET AA
Sbjct: 16  LLKPSFTSLFFNNTTSPRHFRSSQPPPRFIPKASSSSSSSSS--SSLLCRRRFIAET-AA 75

Query: 67  VSLSL-SPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 126
           VSLSL SP + PV+PAKSE+ LS+W R YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 76  VSLSLASPFLGPVQPAKSEDALSEWERCYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 135

Query: 127 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 186
           LETKDGG TW PRSIPSAE+EDFNYRFNSISF GKEGWIVGKPAILLYTSDAGE+WERI 
Sbjct: 136 LETKDGGNTWVPRSIPSAEDEDFNYRFNSISFIGKEGWIVGKPAILLYTSDAGENWERIA 195

Query: 187 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 246
           LSAQLPGDMVYIKATGEK AEMVTD+GAIYVTSNKGYNW+AAVQETVSATLNRTVSSGIS
Sbjct: 196 LSAQLPGDMVYIKATGEKGAEMVTDQGAIYVTSNKGYNWRAAVQETVSATLNRTVSSGIS 255

Query: 247 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 306
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADG
Sbjct: 256 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADG 315

Query: 307 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 366
           GLWLLVRGGGLFLSKGTGI+EDFEEV VQSRGFGILDVGYRS+EEAWAAGGSG+LL+TTN
Sbjct: 316 GLWLLVRGGGLFLSKGTGITEDFEEVAVQSRGFGILDVGYRSQEEAWAAGGSGILLRTTN 375

Query: 367 GGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           GGK+W RDKAADNIAANLYSVKFI+DKKGFVLGNDGVLL+YLG
Sbjct: 376 GGKSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 415

[Close]
BLAST of Cp4.1LG17g07750.1 vs. TrEMBL
Match: A0A0D2SL22_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G210500 PE=4 SV=1)

HSP 1 Score: 665.6 bits (1716), Expect = 3.8e-188
Identity = 335/401 (83.54%), Postives = 360/401 (89.78%), Query Frame = 1 

Query: 8   LRPSCFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSS-----INRREFVAETAAAV 67
           L PS  +   PR     LS P  +  +  S+   +S  +SS     +NRR+ +++TA+ +
Sbjct: 16  LIPSLTSLFPPRLLHRPLSLPHSRFISKASLHHPSSPSSSSSPPSLVNRRQIISQTAS-I 75

Query: 68  SLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 127
           SLSL+ L +   PAKSEE LS+W R+YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE
Sbjct: 76  SLSLATLSSLPLPAKSEEVLSEWERVYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 135

Query: 128 TKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLS 187
           TKDGG TW  RSIPSAE+EDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGESWERIPLS
Sbjct: 136 TKDGGNTWTQRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLS 195

Query: 188 AQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGA 247
           AQLPGDMVYIKATGEKSAEMVTD+GAIYVTSN+GYNW+AAVQETVSATLNRTVSSGISGA
Sbjct: 196 AQLPGDMVYIKATGEKSAEMVTDQGAIYVTSNRGYNWRAAVQETVSATLNRTVSSGISGA 255

Query: 248 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 307
           SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL
Sbjct: 256 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 315

Query: 308 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG 367
           WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRS+EEAWAAGGSGVLL+TTNGG
Sbjct: 316 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGVLLRTTNGG 375

Query: 368 KTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           K WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLL+YLG
Sbjct: 376 KNWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLRYLG 415

[Close]
BLAST of Cp4.1LG17g07750.1 vs. TrEMBL
Match: A0A061E463_THECC (Photosystem II stability/assembly factor, chloroplast (HCF136) isoform 1 OS=Theobroma cacao GN=TCM_007737 PE=4 SV=1)

HSP 1 Score: 663.3 bits (1710), Expect = 1.9e-187
Identity = 331/401 (82.54%), Postives = 361/401 (90.02%), Query Frame = 1 

Query: 8   LRPSCFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSS-----INRREFVAETAAAV 67
           L+PS  +  SPR  F   SQ Q  PR +   + +    +SS     +NRR+ +++TA+ +
Sbjct: 14  LKPSLTSLFSPR--FLHRSQTQPHPRLICKASLQQPHHSSSSSPTLVNRRQLISQTAS-L 73

Query: 68  SLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 127
           SLS++ L A   PAKSEE LS+W R+YLPIDPGVVLLDIAFVPDD NHGFLLGTRQTILE
Sbjct: 74  SLSVATLSALQLPAKSEEVLSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILE 133

Query: 128 TKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLS 187
           TKDGG TW PRSIPSAE+EDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGESWERIPLS
Sbjct: 134 TKDGGNTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLS 193

Query: 188 AQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGA 247
           AQLPGDMVYIKAT EKSAEMVTD+GAIYVTSN+G+NW+AAVQETVSATLNRTVSSGISGA
Sbjct: 194 AQLPGDMVYIKATDEKSAEMVTDQGAIYVTSNRGFNWRAAVQETVSATLNRTVSSGISGA 253

Query: 248 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 307
           SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADGGL
Sbjct: 254 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGL 313

Query: 308 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG 367
           WLLVRGGGLFLSKGTGI+EDFEE+PVQSRGFGILDVGYRS EEAWAAGGSGVLL+TTNGG
Sbjct: 314 WLLVRGGGLFLSKGTGITEDFEEIPVQSRGFGILDVGYRSMEEAWAAGGSGVLLRTTNGG 373

Query: 368 KTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           K+WTRDKAADNIAANLYSVKFI+DKKGFVLGNDGVLL+YLG
Sbjct: 374 KSWTRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 411

[Close]
BLAST of Cp4.1LG17g07750.1 vs. TrEMBL
Match: D7T9G8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02150 PE=4 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 7.9e-186
Identity = 320/368 (86.96%), Postives = 348/368 (94.57%), Query Frame = 1 

Query: 38  VTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKP-AKSEENL-SQWARLYLPIDPG 97
           V P+A ++  S+ RR  +AETAA   +S++PLI  ++P AKSEE L S+W R+YLPIDPG
Sbjct: 40  VVPRACLQKPSLTRRHLLAETAA---ISVAPLILGIEPPAKSEEPLLSEWERVYLPIDPG 99

Query: 98  VVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGK 157
           VVLLDIAFVPDDL+HGFLLGTRQTI+ETKDGG TW PRSIPSAE+EDFNYRFNSISF+GK
Sbjct: 100 VVLLDIAFVPDDLSHGFLLGTRQTIMETKDGGNTWVPRSIPSAEDEDFNYRFNSISFKGK 159

Query: 158 EGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNK 217
           EGWIVGKP+ILLYTSDAGESWERIPLSAQLPGD+VYIKATGEKSAEMVTDEGAIYVTSN+
Sbjct: 160 EGWIVGKPSILLYTSDAGESWERIPLSAQLPGDIVYIKATGEKSAEMVTDEGAIYVTSNR 219

Query: 218 GYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEP 277
           GYNW+AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEP
Sbjct: 220 GYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEP 279

Query: 278 GQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGI 337
           GQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL+LSKGTGISEDFEE+PVQSRGFGI
Sbjct: 280 GQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGISEDFEEIPVQSRGFGI 339

Query: 338 LDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGND 397
           LDVGYRSKEEAWAAGGSGVLL+TTNGGKTWTRDKAADNIAANLYSVKFI+D KGFVLGND
Sbjct: 340 LDVGYRSKEEAWAAGGSGVLLRTTNGGKTWTRDKAADNIAANLYSVKFIDDTKGFVLGND 399

Query: 398 GVLLQYLG 404
           GVLL++LG
Sbjct: 400 GVLLRFLG 404

[Close]
BLAST of Cp4.1LG17g07750.1 vs. TAIR10
Match: AT5G23120.1 (AT5G23120.1 photosystem II stability/assembly factor, chloroplast (HCF136))

HSP 1 Score: 627.1 bits (1616), Expect = 7.5e-180
Identity = 305/392 (77.81%), Postives = 351/392 (89.54%), Query Frame = 1 

Query: 15  SSSPRHSFTSLSQ---PQLQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIA 74
           S SPR     +S    P+       S +P +S  + S +RRE + ++AA VSLSLS ++ 
Sbjct: 16  SVSPRFLSQRISHRLIPKASSSPPPSPSPSSSSSSLSFSRRELLYQSAA-VSLSLSSIVG 75

Query: 75  PVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWA 134
           P   A+++E LS+W R++LPIDPGVVLLDIAFVPD+ + GFLLGTRQT+LETKDGG TW 
Sbjct: 76  P---ARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWN 135

Query: 135 PRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVY 194
           PRSIPSAEEEDFNYRFNSISF+GKEGWI+GKPAILLYT+DAGE+W+RIPLS+QLPGDMV+
Sbjct: 136 PRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVF 195

Query: 195 IKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNT 254
           IKAT +KSAEMVTDEGAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ 
Sbjct: 196 IKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSA 255

Query: 255 VNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGL 314
           VNRSPDGRYVAVSSRGNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL
Sbjct: 256 VNRSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 315

Query: 315 FLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAA 374
           +LSKGTGI+E+FEEVPVQSRGFGILDVGYRS+EEAWAAGGSG+LL+T NGGK+W RDKAA
Sbjct: 316 YLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAA 375

Query: 375 DNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           DNIAANLY+VKF++DKKGFVLGNDGVLL+Y+G
Sbjct: 376 DNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403

[Close]
BLAST of Cp4.1LG17g07750.1 vs. NCBI nr
Match: gi|659122869|ref|XP_008461367.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucumis melo])

HSP 1 Score: 754.6 bits (1947), Expect = 8.9e-215
Identity = 378/408 (92.65%), Postives = 393/408 (96.32%), Query Frame = 1 

Query: 1   MATLQQ-LLRPS----CFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFV 60
           MATLQQ LL+PS     FASSSPRHS   LSQPQL PRT++S +PKAS+ NSSINRR+FV
Sbjct: 1   MATLQQQLLKPSWTSSLFASSSPRHS---LSQPQLLPRTISSTSPKASLHNSSINRRQFV 60

Query: 61  AETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLG 120
           A+TAAAVSLSLSP IAPV+PAKSEE+LS+W RLYLPIDPGVVLLDIAFVPDDLNHGFLLG
Sbjct: 61  ADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLNHGFLLG 120

Query: 121 TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGES 180
           TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGES
Sbjct: 121 TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGES 180

Query: 181 WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV 240
           WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV
Sbjct: 181 WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV 240

Query: 241 SSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG 300
           SSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG
Sbjct: 241 SSGISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG 300

Query: 301 WRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL 360
           WRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL
Sbjct: 301 WRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL 360

Query: 361 LKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           LKTTNGG++WTRDKAADNIAANLYSVKFIN+KKGFVLGNDGVLLQYLG
Sbjct: 361 LKTTNGGRSWTRDKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 405

[Close]
BLAST of Cp4.1LG17g07750.1 vs. NCBI nr
Match: gi|449436353|ref|XP_004135957.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucumis sativus])

HSP 1 Score: 753.1 bits (1943), Expect = 2.6e-214
Identity = 380/409 (92.91%), Postives = 393/409 (96.09%), Query Frame = 1 

Query: 1   MATLQQ-LLRPS----CFASS-SPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREF 60
           MATLQQ LL+PS     FASS SPRHS   LSQPQL PRT++S TPKAS+ NSSINRR F
Sbjct: 1   MATLQQQLLKPSWTSSLFASSTSPRHS---LSQPQLLPRTLSSTTPKASLHNSSINRRHF 60

Query: 61  VAETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLL 120
           VA+TAAAVSLSLSP IAPV+PAKSEE+LS+W RLYLPIDPGVVLLDIAFVPDD+NHGFLL
Sbjct: 61  VADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMNHGFLL 120

Query: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGE 180
           GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGE
Sbjct: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGE 180

Query: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240
           SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT
Sbjct: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240

Query: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300
           VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM
Sbjct: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300

Query: 301 GWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360
           GWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV
Sbjct: 301 GWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360

Query: 361 LLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           LLKTTNGG++WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Sbjct: 361 LLKTTNGGRSWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 406

[Close]
BLAST of Cp4.1LG17g07750.1 vs. NCBI nr
Match: gi|703090427|ref|XP_010094078.1| (hypothetical protein L484_018094 [Morus notabilis])

HSP 1 Score: 671.0 bits (1730), Expect = 1.3e-189
Identity = 336/403 (83.37%), Postives = 365/403 (90.57%), Query Frame = 1 

Query: 7   LLRPSCFA-----SSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAAA 66
           LL+PS  +     ++SPRH  +S   P+  P+  +S +  +S  +S + RR F+AET AA
Sbjct: 16  LLKPSFTSLFFNNTTSPRHFRSSQPPPRFIPKASSSSSSSSS--SSLLCRRRFIAET-AA 75

Query: 67  VSLSL-SPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 126
           VSLSL SP + PV+PAKSE+ LS+W R YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 76  VSLSLASPFLGPVQPAKSEDALSEWERCYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 135

Query: 127 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 186
           LETKDGG TW PRSIPSAE+EDFNYRFNSISF GKEGWIVGKPAILLYTSDAGE+WERI 
Sbjct: 136 LETKDGGNTWVPRSIPSAEDEDFNYRFNSISFIGKEGWIVGKPAILLYTSDAGENWERIA 195

Query: 187 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 246
           LSAQLPGDMVYIKATGEK AEMVTD+GAIYVTSNKGYNW+AAVQETVSATLNRTVSSGIS
Sbjct: 196 LSAQLPGDMVYIKATGEKGAEMVTDQGAIYVTSNKGYNWRAAVQETVSATLNRTVSSGIS 255

Query: 247 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 306
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADG
Sbjct: 256 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADG 315

Query: 307 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 366
           GLWLLVRGGGLFLSKGTGI+EDFEEV VQSRGFGILDVGYRS+EEAWAAGGSG+LL+TTN
Sbjct: 316 GLWLLVRGGGLFLSKGTGITEDFEEVAVQSRGFGILDVGYRSQEEAWAAGGSGILLRTTN 375

Query: 367 GGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           GGK+W RDKAADNIAANLYSVKFI+DKKGFVLGNDGVLL+YLG
Sbjct: 376 GGKSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 415

[Close]
BLAST of Cp4.1LG17g07750.1 vs. NCBI nr
Match: gi|719963529|ref|XP_010249997.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 667.9 bits (1722), Expect = 1.1e-188
Identity = 323/363 (88.98%), Postives = 346/363 (95.32%), Query Frame = 1 

Query: 41  KASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLD 100
           +AS+   S+NRR+F+AET AAVSLSL+PL   V+PAKSEE LS+W R+YLPIDPGVVLLD
Sbjct: 40  RASLHQPSMNRRQFIAET-AAVSLSLAPLSGFVEPAKSEEALSEWERVYLPIDPGVVLLD 99

Query: 101 IAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIV 160
           IAFVPD LNHGFLLGTRQTILETKDGG TW PRSIPSAE+EDFNYRFNSISF+ KEGWIV
Sbjct: 100 IAFVPDQLNHGFLLGTRQTILETKDGGNTWVPRSIPSAEDEDFNYRFNSISFRAKEGWIV 159

Query: 161 GKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWK 220
           GKPAILLYTSDAGESWERIPLSAQLPGD+VYIKATGE SAEMVTD+GAIYVTSN+GYNW+
Sbjct: 160 GKPAILLYTSDAGESWERIPLSAQLPGDIVYIKATGENSAEMVTDQGAIYVTSNRGYNWR 219

Query: 221 AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFW 280
           AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQP+W
Sbjct: 220 AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGNYVAVSSRGNFYLTWEPGQPYW 279

Query: 281 QPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGY 340
           QPHNRA+ARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI+E+F+EVPVQSRGFGILDVGY
Sbjct: 280 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFDEVPVQSRGFGILDVGY 339

Query: 341 RSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQ 400
           RSK+EAWAAGGSGVLL+TTNGGKTW RDKAADNIAANLYSVKFIND KGFVLGNDGVLL+
Sbjct: 340 RSKDEAWAAGGSGVLLRTTNGGKTWIRDKAADNIAANLYSVKFINDNKGFVLGNDGVLLR 399

Query: 401 YLG 404
           YLG
Sbjct: 400 YLG 401

[Close]
BLAST of Cp4.1LG17g07750.1 vs. NCBI nr
Match: gi|823159965|ref|XP_012479823.1| (PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Gossypium raimondii])

HSP 1 Score: 665.6 bits (1716), Expect = 5.4e-188
Identity = 335/401 (83.54%), Postives = 360/401 (89.78%), Query Frame = 1 

Query: 8   LRPSCFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSS-----INRREFVAETAAAV 67
           L PS  +   PR     LS P  +  +  S+   +S  +SS     +NRR+ +++TA+ +
Sbjct: 16  LIPSLTSLFPPRLLHRPLSLPHSRFISKASLHHPSSPSSSSSPPSLVNRRQIISQTAS-I 75

Query: 68  SLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 127
           SLSL+ L +   PAKSEE LS+W R+YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE
Sbjct: 76  SLSLATLSSLPLPAKSEEVLSEWERVYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILE 135

Query: 128 TKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLS 187
           TKDGG TW  RSIPSAE+EDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGESWERIPLS
Sbjct: 136 TKDGGNTWTQRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLS 195

Query: 188 AQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGA 247
           AQLPGDMVYIKATGEKSAEMVTD+GAIYVTSN+GYNW+AAVQETVSATLNRTVSSGISGA
Sbjct: 196 AQLPGDMVYIKATGEKSAEMVTDQGAIYVTSNRGYNWRAAVQETVSATLNRTVSSGISGA 255

Query: 248 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 307
           SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL
Sbjct: 256 SYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGL 315

Query: 308 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG 367
           WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRS+EEAWAAGGSGVLL+TTNGG
Sbjct: 316 WLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGVLLRTTNGG 375

Query: 368 KTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 404
           K WTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLL+YLG
Sbjct: 376 KNWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLRYLG 415

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g07750.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
P2SAF_ARATH1.3e-17877.81Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis th... [more]
P2SAF_ORYSJ1.6e-17677.33Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa s... [more]
P2SAF_GUITH1.3e-9646.41Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia the... [more]
YC48L_SYNY39.9e-8148.74Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr2034 PE... [more]
YC48L_THEEB1.1e-7943.73Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=... [more]
BLAST of Cp4.1LG17g07750.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5Y1_CUCSA1.8e-21492.91Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420730 PE=4 SV=1[more]
W9R3A0_9ROSA9.0e-19083.37Uncharacterized protein OS=Morus notabilis GN=L484_018094 PE=4 SV=1[more]
A0A0D2SL22_GOSRA3.8e-18883.54Uncharacterized protein OS=Gossypium raimondii GN=B456_005G210500 PE=4 SV=1[more]
A0A061E463_THECC1.9e-18782.54Photosystem II stability/assembly factor, chloroplast (HCF136) isoform 1 OS=Theo... [more]
D7T9G8_VITVI7.9e-18686.96Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02150 PE=4 SV=... [more]
BLAST of Cp4.1LG17g07750.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23120.17.5e-18077.81 photosystem II stability/assembly factor, chloroplast (HCF136)[more]
BLAST of Cp4.1LG17g07750.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122869|ref|XP_008461367.1|8.9e-21592.65PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucum... [more]
gi|449436353|ref|XP_004135957.1|2.6e-21492.91PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Cucum... [more]
gi|703090427|ref|XP_010094078.1|1.3e-18983.37hypothetical protein L484_018094 [Morus notabilis][more]
gi|719963529|ref|XP_010249997.1|1.1e-18888.98PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nelum... [more]
gi|823159965|ref|XP_012479823.1|5.4e-18883.54PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Gossy... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR028203PSII_CF48-like_dom
IPR016705Ycf48/Hcf136
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009637 response to blue light
biological_process GO:0042793 transcription from plastid promoter
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009735 response to cytokinin
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0009902 chloroplast relocation
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009533 chloroplast stromal thylakoid
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031977 thylakoid lumen
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG17g07750Cp4.1LG17g07750gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG17g07750.1Cp4.1LG17g07750.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG17g07750.1:five_prime_utr:001Cp4.1LG17g07750.1:five_prime_utr:001five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG17g07750.1:cds:001Cp4.1LG17g07750.1:cds:001CDS
Cp4.1LG17g07750.1:cds:002Cp4.1LG17g07750.1:cds:002CDS
Cp4.1LG17g07750.1:cds:003Cp4.1LG17g07750.1:cds:003CDS
Cp4.1LG17g07750.1:cds:004Cp4.1LG17g07750.1:cds:004CDS
Cp4.1LG17g07750.1:cds:005Cp4.1LG17g07750.1:cds:005CDS
Cp4.1LG17g07750.1:cds:006Cp4.1LG17g07750.1:cds:006CDS
Cp4.1LG17g07750.1:cds:007Cp4.1LG17g07750.1:cds:007CDS
Cp4.1LG17g07750.1:cds:008Cp4.1LG17g07750.1:cds:008CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG17g07750.1:three_prime_utr:001Cp4.1LG17g07750.1:three_prime_utr:001three_prime_UTR
Cp4.1LG17g07750.1:three_prime_utr:002Cp4.1LG17g07750.1:three_prime_utr:002three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016705Photosynthesis system II assembly factor Ycf48/Hcf136PIRPIRSF017875Photosystem_II_Ycf48-likecoord: 45..403
score: 7.5E
IPR028203Photosynthesis system II assembly factor Ycf48/Hcf136-like domainPFAMPF14870PSII_BNRcoord: 80..401
score: 8.9E
NoneNo IPR availableGENE3DG3DSA:2.130.10.140coord: 77..229
score: 2.8E-20coord: 289..395
score: 2.8
NoneNo IPR availablePANTHERPTHR32010FAMILY NOT NAMEDcoord: 26..403
score: 1.9E
NoneNo IPR availablePANTHERPTHR32010:SF6PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTICcoord: 26..403
score: 1.9E
NoneNo IPR availableunknownSSF110296Oligoxyloglucan reducing end-specific cellobiohydrolasecoord: 90..402
score: 1.14