Cp4.1LG06g05650 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g05650
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transmembrane protein 56
Location	Cp4.1LG06 : 3472568 .. 3477582 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAATTGATGTTGGACTGTCTTCGTGAAACTTGCTGATTACTGATGTTTATGGAGGATCGTCTTCGTGTTTTGATCTTCATGTTGTGTGTAAATTTGAATTCCACCTGTTTATTTCCCTCTTTGTACAATGTGATTGATTACTTTTGTTGCTGTCTTAGAGTTTATAAATTCATGTCTGACTGTCTTTGTGAAACTAGCTGATTGTGTTGATGTTTTTGGAAGATCTTCTTGTTTCAATTTTGGTGATTATTGTAAATTTGAATTCTACCTGTTGATTTCTTTCTTTCTTTAGCGTGGTTGATTGCTTTTTGTTGCTGTGTATGTTGGACTGCATTTGTGAATCTTTTTGATTGCTGTTGATGTTCCTGGAAGAATGATTTTGTAATTAGTGTAACGTAATTTCTACATACCGTGTTACTCTGAACTTAATTCACAGTTTGTGCTCGCTTGGTTTTATCTTTCAGTTCCTTTGTCATGTTGAACTCTATCTGTTGTGCTTAATCTGTGTTTCTTTTGTTTTTGTTTTTTAAATTCATTTACACATATTTTCAGTGTGATTGATTGCCTTTTGGTTTTTCCTCCTATATTAGGAGTTTAAATTAGACTGCCATTGTTAAACTTGCTGGTCACTGGTCCTTGGCGATCTTCTTTGCATTTCAATTTTCATGATAAGTGTAAGTGGAAATTTTACATCCTGTGGGACTCTGAAGCTAATTCACGATGTTTCTGTTTGGTAGTTTTTATCTTTCAGTTTCTTGGCTGAGGTTGTTATGTATTATTCATTGTGTAGAACTTCATTGAATTGCTGGCTTATGTTGGTTTAGGAGGTGCTCTGTACTATCAACCTGTGAACAATAAAATCTTCACATGTTTGTTTGCTTCACTTCAATGTTGATGGAGCTGATATGTTTGTGAACTAGCGATATTATAATTACAAAAGATGTCTTTGTGATTTGAACAACACCAAGAGGCCATATGCTGTACACTATAGAACAAAAGAAGCCTCTATATTCCGCTTGTTTTCAAATGAAAGCTTCAAAACGAGGCCTTAAACTTGATAAACCTATGGGTACCATTCCAATCATAATTCCTTAACTAGGATTCTGAGAGAACACTGCCACAATACCCTTGCCATCCATTTGGGTTACCTCTGTAGAGTGGTGAATGTGAATAATGCTCTTGTTTCTAAATCTGCCCATGATCTCTATTATTCTTCATTATGTTGATTAAGCTGTTTACCTATTCTTTTGAAGACAGATGTAAAGAGGAGGAGAAGTTAAAGAATTTGGATGAATTGGGCATCTTGTTGTTTCTTTTGAAACCATAGCATGCTGTAACCGAAGATTGAAACAAGCAATCATGTCACTTAAGTCGTATCAAAGCCAGGCTGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCCGCAGGCATACTTGCTAGTAAATTGGTACCTCCCCGTCATTTATGGCTCTTTTATCTTGTTGAATGTGGGTCCCTTGCATTCGACTTTATCTTCAATTCAATCATCGTGGTGTTAACAGGTTGATAGTAATATGCTATTAAGTAGTTTCTCTTCTTTGTGTGAGTTTGCATGTCCTCCTCCTCCTCCTCTTCTTCTTTTTGCCTGTCATTTGTAAATCATCCTTTCGTTTCCAGGTCTATGACGTAACTGATTTGATCAGCGGTGTTTACTTCAAGAGTTATTCCAACCTTTCTAGGATTCAGCGGGTGGAGTGGAACAACCGGTAAATGATCATTCCCTTCTTTGTATTGGTTTATTTATTTTTCCTGGTAATATTATTTCGTTTGCTGTTTTTACAGGGCTATGTCAACTCTCCATGCCATTTTCATCACAGCAGCGTCATTGTACATGGTGTTTTTGTCAGATCTCTTTTCTGACCGATATTTTAGCCTTATTACCTTTCGTAGTTCAACAATATCTGCATTTGGCCTGGGTGTAAGTGCGAACTTTGTACTAAATTCATATATATGGCCAACTTTTCTGTTGTTGGACGGTCTGAAAATCAACTTTCATTTTATTTCTCACGTCCACCTATTTTAATTTTAAGCTCTGTTTTAGTTGCCAACGGTAACTCCCATCACCAACCATCATTTCCATAATAGACTTAAAATTTTGCCAATCTAAAACATAATAGACTTCAAATAGATTTAAATTTTGGTGATACTCCTGCAGGTGTCTGCCGGTTACTTCTTTACTGATTTGGGAATGATCTTGTGGTTTTATCCTGCACTTGGTGGAATGGAGTATGTAAGTGCGTTCTCCCTTTAAATATTGCTGGTTATTGTATATTCCTGTCATATTATCTTGTGTGTTCTTTTGGGTAAAACGGTTATGTGGGAAATTTGTTGTTTGTGGAAAATCATAATGTTGTCTTTTCAGGTGTTACATCATCTCCTTTCTCTCTTAGCTGTGGCCTATGCTATGTTGACTGGTGAGGGGCAACTTTACACCTACATGGTTCTCATCTCTGAAACGACTACACCTGGAATCAATTTGAGATGGTAGTTTTCTGTTTGTTCATATCTTTATCTTGTGTATAGCATTTCATCAGAATATGATCTAAAAGAAACAATTCCCTTCGCATAGGTACCTTGACACAGCTGGAATGAAGAAGTCAAAAGCATACCTCATAAATGGGGTTGTGATATTCTTCGCTTGGCTGGTGAGTATAAAATATCTGATTATTATATATGTATTTTGATTTTATATTTCTTTTCAATTGTGCTCCATGGAGAGTTGGGAACAAAGCAATTTAACTTGTATATTACATCAGGTTGCCAGAATTCTTCTGTTCATGTACATGTTTTACCATGTCTACTTCCACTTGAATCAGGTATCATCAATCTCACCTTTTATCAGTTGTTTGGAATAACTTTATAAATGCTTAAAAAGTGTTTTTAATTGCTAAAAATATATTTATATACTTAAAAAACTCAATCCAAACATACTTCATACTAATGGCAAAACATTAACAATCTGTTACTGGCCATATGATAACTTTGTCGCAGTACAAGTCTACAATTGTTTGAAAGAGACTCGTCAGCTTGCATGCATCATATGAACCATGTGCCATATACATATATTTGTTTCCTTCTTTACAAATCAATACAACATTTTTCTTTTATAAGAAAGAATTAATTTGATTGATTATATGAAATTTTAAAAAAATGAAAAAACATGGTAAATTACGAGCTTAATTTCCAAACTTTTTAGATTGGTGTGAAAATGTCCTTTAAGCTTTAAAATTATCTAATATGTCTCAAAACTTTCAATTTTATGTCTTATAGAATTTTATGTCTTATAGAACCTTGGAAGTATCTAATGAGTCCATAAACTTTCATTTTTATATTAATAAGTTGTTCAAACTTTTAGTTTTGTATTTAACCTTCTTTAAAATTCATGAACCTACTAGATAAAACATTGTAAGTTTAATGTCTTACCAAACAATTCTATTAGACACTTTTTAAGTTAAGAATCTATTAACAAAAGCTTGAATCTATTAACAAAAGCATGAAAGCTTAGGGGGAGATATTTTATCTCCTAAGTAAGAAAAAGTATAGATTTGTGAACATGAGATTAGTTTATCAGCTAAAGCATTCACTCATTTATTCGAGGTTGGAACTCCAAATCTCCACTAAATCTGTACTAAAAAAGAAAGTATAGATAGACTTGAGAAGGTTTTGGGGTGTCATTATTTATTTGGAAAATTTTATGATCTCTCTCAAATCAATTCAACAATTTTCAAATTTACCAACCCTTGGTTATGAAACATGGTAATGATTTTTGGATATGGTGTGGGGGAGAGTCCTTAATCATTACTTTTTGTAATTTTCAGTTTGGTATCATTCTTTTGGATCGATCTCCTTTCTTGTAGTTGAGGTCTCTCTCTTTTAGCTTGTTTTTGAAATTTTGATTTTTTTAAATTGTACTTTATTCTTTTCGCCACATAAAGTGTTTTAACAATTTCGATCTTTGGGGTCCCTCTTGTCAAGTTGGAGTTGGTAGTTGAGACTTTTTATTGTTAGTGGCATGCGACACCAATCATGTCTTTTGGGTGAATAATTCTGTGATCATAGCTGTGTGCCATTTAAATCATAGCCTCCATCCAGTCTGATGATTACTTCTAACTTTAAATTCTCATTATTTAATAATTTAACGCTAAAACTTATATTAAAGTTGTCAAAATATTATGACCATAGTTTATTTTCAATGATTTTTTGAAGAAATTGATGTATTTGTTCAATTTGGTAGAGAAAAATAAAGGGAAAAACTCATGTTCTGAAGTTTGTGTTAATGCATTTCCCTTAATCATACAGGTTCTCCAGATGCACGCTTTTGGGCAGCTTTTGGTTTTCGTGGTTCCATTGGTATTATCGGTCATGAACTGTATGTGGTTCGCGATAATATTCAAAGGATTGAAAAAGACATTGGCAAAGAGACAATGAAACAGAAAAACATCTGCTGCTATTTGGGCCAACGTTGTGAGATAAGGTAGTGTTTCAAAATTCTCTTCTTTCTTGCACCACTTGTACATGTTCAAGTTGCAAATCTGTACAATTTCATGTTAATTTTTAGTACATAGATAGCCATTCTAGATCGAAAAATAATGGGGAAAATTTTTTTTTAGCATTATTTAATGCATAATGAATGATTGTTTATTGTAGATTTACAGGATGGGATATTTGCAATCAATGCAAAATGCCTTTGCTGATATAATCTCTCTCTGGTTTGTTTCTGATTTAATTTCTCAAACTTATATATATTTGTGTCAATTTTGTTTAGTTCTTTCGATCTCGCGTCACTGTTTAATTCCTAAATTTTTAAGTGTCTAATAGGTTATTGAATTTTTAGTTGTGTCTAAGAAAGTTCTTTCGATTTTGCGTTAGTTCCTAAATTTTTAAGTGTCTAATAGGTTATTGAATTTTTAGTTGTGTCTAAGAAAGTTCTTTCGATTTTGCGTTACTA

mRNA sequence

AGAAATTGATGTTGGACTGTCTTCGTGAAACTTGCTGATTACTGATGTTTATGGAGGATCGTCTTCGTGTTTTGATCTTCATGTTGTGTGTAAATTTGAATTCCACCTGTTTATTTCCCTCTTTGTACAATGTGATTGATTACTTTTGTTGCTGTCTTAGAGTTTATAAATTCATGTCTGACTGTCTTTGTGAAACTAGCTGATTGTGTTGATGTTTTTGGAAGATCTTCTTGTTTCAATTTTGGTGATTATTGTAAATTTGAATTCTACCTGTTGATTTCTTTCTTTCTTTAGCGTGGTTGATTGCTTTTTGTTGCTGTGTATGTTGGACTGCATTTGTGAATCTTTTTGATTGCTGTTGATGTTCCTGGAAGAATGATTTTGTAATTAGTGTAACGTAATTTCTACATACCGTGTTACTCTGAACTTAATTCACAGTTTGTGCTCGCTTGGTTTTATCTTTCAGTTCCTTTGTCATGTTGAACTCTATCTGTTGTGCTTAATCTGTGTTTCTTTTGTTTTTGTTTTTTAAATTCATTTACACATATTTTCAGTGTGATTGATTGCCTTTTGGTTTTTCCTCCTATATTAGGAGTTTAAATTAGACTGCCATTGTTAAACTTGCTGGTCACTGGTCCTTGGCGATCTTCTTTGCATTTCAATTTTCATGATAAGTATGTAAAGAGGAGGAGAAGTTAAAGAATTTGGATGAATTGGGCATCTTGTTGTTTCTTTTGAAACCATAGCATGCTGTAACCGAAGATTGAAACAAGCAATCATGTCACTTAAGTCGTATCAAAGCCAGGCTGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCCGCAGGCATACTTGCTAGTAAATTGGTTGATAGTAATATGCTATTAAGTAGTTTCTCTTCTTTGTGTGAGTTTGCATGTCCTCCTCCTCCTCCTCTTCTTCTTTTTGCCTGTCATTTGGCTATGTCAACTCTCCATGCCATTTTCATCACAGCAGCGTCATTGTACATGGTGTTTTTGTCAGATCTCTTTTCTGACCGATATTTTAGCCTTATTACCTTTCGTAGTTCAACAATATCTGCATTTGGCCTGGGTGTGTCTGCCGGTTACTTCTTTACTGATTTGGGAATGATCTTGTGGTTTTATCCTGCACTTGGTGGAATGGAGTATGTGTTACATCATCTCCTTTCTCTCTTAGCTGTGGCCTATGCTATGTTGACTGGTGAGGGGCAACTTTACACCTACATGGTTCTCATCTCTGAAACGACTACACCTGGAATCAATTTGAGATGGTACCTTGACACAGCTGGAATGAAGAAGTCAAAAGCATACCTCATAAATGGGGTTGTGATATTCTTCGCTTGGCTGGTTCTCCAGATGCACGCTTTTGGGCAGCTTTTGGTTTTCGTGGTTCCATTGGTATTATCGGTCATGAACTGTATGTGGTTCGCGATAATATTCAAAGGATTGAAAAAGACATTGGCAAAGAGACAATGAAACAGAAAAACATCTGCTGCTATTTGGGCCAACGTTGTGAGATAAGATTTACAGGATGGGATATTTGCAATCAATGCAAAATGCCTTTGCTGATATAATCTCTCTCTGGTTTGTTTCTGATTTAATTTCTCAAACTTATATATATTTGTGTCAATTTTGTTTAGTTCTTTCGATCTCGCGTCACTGTTTAATTCCTAAATTTTTAAGTGTCTAATAGGTTATTGAATTTTTAGTTGTGTCTAAGAAAGTTCTTTCGATTTTGCGTTAGTTCCTAAATTTTTAAGTGTCTAATAGGTTATTGAATTTTTAGTTGTGTCTAAGAAAGTTCTTTCGATTTTGCGTTACTA

Coding sequence (CDS)

ATGTCACTTAAGTCGTATCAAAGCCAGGCTGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCCGCAGGCATACTTGCTAGTAAATTGGTTGATAGTAATATGCTATTAAGTAGTTTCTCTTCTTTGTGTGAGTTTGCATGTCCTCCTCCTCCTCCTCTTCTTCTTTTTGCCTGTCATTTGGCTATGTCAACTCTCCATGCCATTTTCATCACAGCAGCGTCATTGTACATGGTGTTTTTGTCAGATCTCTTTTCTGACCGATATTTTAGCCTTATTACCTTTCGTAGTTCAACAATATCTGCATTTGGCCTGGGTGTGTCTGCCGGTTACTTCTTTACTGATTTGGGAATGATCTTGTGGTTTTATCCTGCACTTGGTGGAATGGAGTATGTGTTACATCATCTCCTTTCTCTCTTAGCTGTGGCCTATGCTATGTTGACTGGTGAGGGGCAACTTTACACCTACATGGTTCTCATCTCTGAAACGACTACACCTGGAATCAATTTGAGATGGTACCTTGACACAGCTGGAATGAAGAAGTCAAAAGCATACCTCATAAATGGGGTTGTGATATTCTTCGCTTGGCTGGTTCTCCAGATGCACGCTTTTGGGCAGCTTTTGGTTTTCGTGGTTCCATTGGTATTATCGGTCATGAACTGTATGTGGTTCGCGATAATATTCAAAGGATTGAAAAAGACATTGGCAAAGAGACAATGA

Protein sequence

MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVDSNMLLSSFSSLCEFACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVLQMHAFGQLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKRQ

Homology

[Close]

BLAST of Cp4.1LG06g05650 vs. TrEMBL
Match: A0A0A0L1M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614180 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.7e-90
Identity = 187/249 (75.10%), Postives = 208/249 (83.53%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVD------SNMLLSSFSSLCEFACPP 64
           S +SQA +LLKYLVLSDPVVPYISIPAG+LASKLV       S++   S+S+L       
Sbjct: 2   SLKSQAGELLKYLVLSDPVVPYISIPAGVLASKLVYDLTDMISSVYFKSYSNLSRIQ--- 61

Query: 65  PPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAG 124
                +   + AMST+HAIFITAA+LYMVFLSDL+SD+YF  ITFR+STIS FGLGVS G
Sbjct: 62  ----RVEWNNRAMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGVSVG 121

Query: 125 YFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 184
           YF TDL MILWFYPA+GGMEYV+HHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL
Sbjct: 122 YFITDLVMILWFYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 181

Query: 185 RWYLDTAGMKKSKAYLINGVVIFFAWLVLQMHAFGQLLVFVVPLVLSVMNCMWFAIIFKG 244
           RWYLDTAGMKKSKAYLING+VIFFAWLVLQMH FGQ LVFVVP +L +MN  WF+ IF+G
Sbjct: 182 RWYLDTAGMKKSKAYLINGIVIFFAWLVLQMHVFGQFLVFVVPSILWIMNLTWFSKIFRG 241

Query: 245 LKKTLAKRQ 248
           LKKTLAKRQ
Sbjct: 242 LKKTLAKRQ 243

[Close]

BLAST of Cp4.1LG06g05650 vs. TrEMBL
Match: B9H849_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22760g PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.2e-74
Identity = 168/273 (61.54%), Postives = 195/273 (71.43%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLV-DSNMLLS-----SFSSLCEF 60
           M++KSYQ  AE LLK  +L+ P++PY SI  GI A K+V D   L S     S+S+L   
Sbjct: 1   MAMKSYQINAELLLKEYLLAGPLIPYTSITGGIFACKMVYDLTSLFSAVYFKSYSNLTNL 60

Query: 61  ACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDR-YFSLITFRSSTISAFGL 120
                    +   + A+ST HA+FIT  SLY VF SDLFSD+ +  L+TFRSS +S F L
Sbjct: 61  Q-------RIEWNNRAISTFHAVFITMMSLYFVFCSDLFSDQPHAGLVTFRSSALSTFAL 120

Query: 121 GVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTT 180
           GVSAGYF  DLGMI+WFYP+LGGMEYV+HH LSL+AVAY+MLTGEGQLYTYMVLISETTT
Sbjct: 121 GVSAGYFIADLGMIIWFYPSLGGMEYVIHHSLSLIAVAYSMLTGEGQLYTYMVLISETTT 180

Query: 181 PGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVL--------------------QMHAFG 240
           PGINLRWYLDTAGMKKSKAYL+NGVVIFFAW V                     QMH+FG
Sbjct: 181 PGINLRWYLDTAGMKKSKAYLLNGVVIFFAWFVARILLFIYLFYHVFLHQYQVKQMHSFG 240

Query: 241 QLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKR 247
           +LL  VVP+VLSVMN MWF  IFKG+KKTLAKR
Sbjct: 241 RLLALVVPVVLSVMNLMWFWKIFKGMKKTLAKR 266

[Close]

BLAST of Cp4.1LG06g05650 vs. TrEMBL
Match: A0A0D2V1E3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G039200 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.9e-74
Identity = 159/249 (63.86%), Postives = 190/249 (76.31%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVDSNMLLSSFSSLCEFACPPPP 60
           M +KSYQ+ AE L+K  +L+D  +PY SI  GI A K+V    L   FSS+   + P  P
Sbjct: 1   MGIKSYQNPAELLVKEYLLADSFIPYTSIICGICACKMVYD--LTQLFSSVYFKSYPSLP 60

Query: 61  PLLLFA-CHLAMSTLHAIFITAASLYMVFLSDLFSD-RYFSLITFRSSTISAFGLGVSAG 120
            +      + ++ST HA+FITA SLY VF S+L+SD +Y  ++TFRSS +S F LG S G
Sbjct: 61  KIQRTEWSNRSISTFHAMFITAMSLYFVFWSNLYSDNQYAGMVTFRSSALSTFSLGASVG 120

Query: 121 YFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 180
           YF  DLGMI+WFYP+LGGMEYVLHHLLSL AVAY+MLTGEGQLYT+MVLISETTTPGINL
Sbjct: 121 YFLADLGMIIWFYPSLGGMEYVLHHLLSLAAVAYSMLTGEGQLYTFMVLISETTTPGINL 180

Query: 181 RWYLDTAGMKKSKAYLINGVVIFFAWLVLQMHAFGQLLVFVVPLVLSVMNCMWFAIIFKG 240
           RWYLDT GMK+SKAYL+NGVVIF AW V QMH++G LL+FVVP VLSVMN  WF  I +G
Sbjct: 181 RWYLDTVGMKRSKAYLVNGVVIFVAWFVKQMHSYGLLLIFVVPSVLSVMNLFWFGKIIRG 240

Query: 241 LKKTLAKRQ 248
           L+KTLAKRQ
Sbjct: 241 LRKTLAKRQ 247

[Close]

BLAST of Cp4.1LG06g05650 vs. TrEMBL
Match: A0A151U271_CAJCA (Transmembrane protein 56 OS=Cajanus cajan GN=KK1_005948 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.0e-72
Identity = 163/274 (59.49%), Postives = 195/274 (71.17%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLV-DSNMLLS-----SFSSLCEF 60
           M  KSYQ++A   +K  +L+DP++PY SI  GI A K+V D   L S     S+SSL   
Sbjct: 8   MKFKSYQNRANVFVKEYLLADPLIPYTSIVGGIFACKMVYDLTQLFSAVHFKSYSSLTRI 67

Query: 61  ACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFS-LITFRSSTISAFGL 120
                    +   + AMST+HA+FIT  SLY+VF S+LFSD   S LITF+SS++S F L
Sbjct: 68  Q-------RVEWNNRAMSTIHALFITTMSLYLVFCSNLFSDNQSSELITFQSSSLSTFAL 127

Query: 121 GVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTT 180
           GVS GYF  DLGMI+WF+P+LGG EYV+HHLLSL+AVA++ML+GEGQLYTYMVLISETTT
Sbjct: 128 GVSVGYFIADLGMIIWFFPSLGGYEYVIHHLLSLVAVAFSMLSGEGQLYTYMVLISETTT 187

Query: 181 PGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVL--------------------QMHAFG 240
           PGINLRWYLD AGMKK+KAYLINGVVIF AWLV                     QMH FG
Sbjct: 188 PGINLRWYLDAAGMKKTKAYLINGVVIFIAWLVARVLLFVYMFYHVYLHYDQVEQMHTFG 247

Query: 241 QLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 248
           Q+LV VVPLVLS+MN +WF+ I KGL+KTLAKRQ
Sbjct: 248 QVLVIVVPLVLSIMNLVWFSKIIKGLRKTLAKRQ 274

[Close]

BLAST of Cp4.1LG06g05650 vs. TrEMBL
Match: A0A0B2PW65_GLYSO (Transmembrane protein 56-B OS=Glycine soja GN=glysoja_019966 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.8e-71
Identity = 165/274 (60.22%), Postives = 193/274 (70.44%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLV-DSNMLLS-----SFSSLCEF 60
           M  KSYQ++A   +K  +L+DP++PY SI  GI A K+V D   L S     S+SSL   
Sbjct: 8   MKFKSYQNRANLFVKEYLLADPLIPYTSIIGGIFACKMVYDLTQLFSTVHFKSYSSLTRI 67

Query: 61  ACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFS-LITFRSSTISAFGL 120
                    +   + +MST+HAIFIT  SLY+VF S+L+SD   S LITFRSS+ S F L
Sbjct: 68  Q-------RVEWNNRSMSTIHAIFITTMSLYLVFCSNLYSDNQSSELITFRSSSSSTFAL 127

Query: 121 GVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTT 180
           GVS GYF  DLGMI WF+P+LGG EYV+HHLLSL+AVA++ML+GEGQLYTYMVLISETTT
Sbjct: 128 GVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLSLVAVAFSMLSGEGQLYTYMVLISETTT 187

Query: 181 PGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVL--------------------QMHAFG 240
           PGINLRWYLD AGMKKSKAYLINGVVIF AWLV                     QMHAFG
Sbjct: 188 PGINLRWYLDAAGMKKSKAYLINGVVIFIAWLVARILLFVYMFYHVYLHFDQIEQMHAFG 247

Query: 241 QLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 248
           Q+LV VVPL LSVMN +WF+ I KGL+KTLAKRQ
Sbjct: 248 QVLVIVVPLALSVMNLIWFSKIIKGLRKTLAKRQ 274

[Close]

BLAST of Cp4.1LG06g05650 vs. TAIR10
Match: AT4G19645.1 (AT4G19645.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 249.6 bits (636), Expect = 2.0e-66
Identity = 146/275 (53.09%), Postives = 183/275 (66.55%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVD------SNMLLSSFSSLCEF 60
           M +KSYQ+QAE  +++ +L+DP +PY S+  GI   KLV       S++ + S+S+L + 
Sbjct: 1   MEIKSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKI 60

Query: 61  ACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYF--SLITFRSSTISAFG 120
                    +   +  +ST+HAIFI+  +LY  F SDLFSD+    +L  FR+S +S FG
Sbjct: 61  K-------RIEWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFG 120

Query: 121 LGVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETT 180
           LGVS GYF  DLGMI W YP+LGG EY+LHH LS  AVAY++ +GE QLYTYMVLISE T
Sbjct: 121 LGVSVGYFLADLGMIFWLYPSLGGSEYILHHCLSGTAVAYSLFSGEAQLYTYMVLISEVT 180

Query: 181 TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWL--------------------VLQMHAF 240
           TP INLRWYLD AG+K+SKAYL+NGV IFFAWL                    V++MH F
Sbjct: 181 TPEINLRWYLDIAGLKRSKAYLVNGVAIFFAWLTARILLFIYMFYHVYTHYDQVIEMHTF 240

Query: 241 GQLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 248
           G LLVFVVP+ LSVMN +WF  I KGLKKTL KRQ
Sbjct: 241 GYLLVFVVPISLSVMNLIWFGKIVKGLKKTLEKRQ 268

[Close]

BLAST of Cp4.1LG06g05650 vs. TAIR10
Match: AT1G31300.1 (AT1G31300.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 242.7 bits (618), Expect = 2.5e-64
Identity = 141/274 (51.46%), Postives = 177/274 (64.60%), Query Frame = 1


Query: 2   SLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVDSNMLLSSFSSLCEFACPPPPP 61
           ++KSY  QA+ L+K  +L+DP +PY S+  GI   K+V           LC F       
Sbjct: 11  AIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVV---------YDLCHFISNSHSK 70

Query: 62  LLLFACHL--------AMSTLHAIFITAASLYMVFLSDLFSDRYFS-LITFRSSTISAFG 121
             +    +         +ST+HAIFI+A SLY VF SDLFSDR+ + L+ FRSS +S+ G
Sbjct: 71  TYIILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLG 130

Query: 122 LGVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETT 181
           LG+S GYF  DLGMI W YP+LGG+EY++HH LS +AVAY++ +GEGQLYTYMVLISE T
Sbjct: 131 LGISIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEIT 190

Query: 182 TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWL--------------------VLQMHAF 241
           TP INLRWYLDTAGMKKS AY++NGV IF AWL                    V++MH F
Sbjct: 191 TPEINLRWYLDTAGMKKSLAYVVNGVFIFLAWLVARILLFIYMFYHVYLHYNQVMRMHIF 250

Query: 242 GQLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKR 247
           G +LVF VP  L VMN +WF  I +G+KKTLAKR
Sbjct: 251 GYVLVFGVPAALGVMNLIWFGKIVRGVKKTLAKR 275

[Close]

BLAST of Cp4.1LG06g05650 vs. TAIR10
Match: AT4G10360.1 (AT4G10360.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 152.1 bits (383), Expect = 4.4e-37
Identity = 82/195 (42.05%), Postives = 115/195 (58.97%), Query Frame = 1


Query: 72  STLHAIFITAASLYMVFLSDLFSDRYFSLITFRSST-ISAFGLGVSAGYFFTDLGMILWF 131
           ST HA+F + AS+Y + +SD F +         S+T +S   +G+S GYF  DL MI W+
Sbjct: 63  STFHAVFTSVASIYFLVISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWY 122

Query: 132 YPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKKS 191
           +P LGG+EYV HH LS+ A+  ++ +G+ Q Y ++VL+SE TTP +NLRWYLD +G K S
Sbjct: 123 FPTLGGIEYVFHHFLSMFAIILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGS 182

Query: 192 KAYLINGVVIFFAWLVL--------------------QMHAFGQLLVFVVPLVLSVMNCM 246
           KAY +NG+ +F  WLV                     Q+   G   +  +P  L+VMN +
Sbjct: 183 KAYTLNGIALFLGWLVARVLLFIFFFVHMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLL 242

[Close]

BLAST of Cp4.1LG06g05650 vs. NCBI nr
Match: gi|659133576|ref|XP_008466799.1| (PREDICTED: transmembrane protein 56-like [Cucumis melo])

HSP 1 Score: 341.3 bits (874), Expect = 1.4e-90
Identity = 194/269 (72.12%), Postives = 211/269 (78.44%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVD------SNMLLSSFSSLCEFACPP 64
           S +SQAEQLLKYLVLSDPVVPYISIPAG+LASKLV       S +   S+S+L       
Sbjct: 2   SLKSQAEQLLKYLVLSDPVVPYISIPAGVLASKLVYDLTDLISGVYFKSYSNLSRIQ--- 61

Query: 65  PPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAG 124
                +   + AMST+HAIFITAA+LYMVFLSDL+SDRYF  ITFRSSTIS FGLGVS G
Sbjct: 62  ----RVEWNNRAMSTVHAIFITAAALYMVFLSDLYSDRYFGPITFRSSTISTFGLGVSVG 121

Query: 125 YFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 184
           YF TDL MILWFYPA+GGMEYV+HHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL
Sbjct: 122 YFITDLVMILWFYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 181

Query: 185 RWYLDTAGMKKSKAYLINGVVIFFAWL--------------------VLQMHAFGQLLVF 244
           RWYLDTAGMKKSKAYLING+VIFFAWL                    VLQMH FGQLLVF
Sbjct: 182 RWYLDTAGMKKSKAYLINGIVIFFAWLVARILLFMYLFYHVYLHLNQVLQMHVFGQLLVF 241

Query: 245 VVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 248
           VVPL+LS+MN  WF+ IF+GLKKTLAKRQ
Sbjct: 242 VVPLILSIMNLTWFSKIFRGLKKTLAKRQ 263

[Close]

BLAST of Cp4.1LG06g05650 vs. NCBI nr
Match: gi|700199786|gb|KGN54944.1| (hypothetical protein Csa_4G614180 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 2.5e-90
Identity = 187/249 (75.10%), Postives = 208/249 (83.53%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVD------SNMLLSSFSSLCEFACPP 64
           S +SQA +LLKYLVLSDPVVPYISIPAG+LASKLV       S++   S+S+L       
Sbjct: 2   SLKSQAGELLKYLVLSDPVVPYISIPAGVLASKLVYDLTDMISSVYFKSYSNLSRIQ--- 61

Query: 65  PPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAG 124
                +   + AMST+HAIFITAA+LYMVFLSDL+SD+YF  ITFR+STIS FGLGVS G
Sbjct: 62  ----RVEWNNRAMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGVSVG 121

Query: 125 YFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 184
           YF TDL MILWFYPA+GGMEYV+HHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL
Sbjct: 122 YFITDLVMILWFYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 181

Query: 185 RWYLDTAGMKKSKAYLINGVVIFFAWLVLQMHAFGQLLVFVVPLVLSVMNCMWFAIIFKG 244
           RWYLDTAGMKKSKAYLING+VIFFAWLVLQMH FGQ LVFVVP +L +MN  WF+ IF+G
Sbjct: 182 RWYLDTAGMKKSKAYLINGIVIFFAWLVLQMHVFGQFLVFVVPSILWIMNLTWFSKIFRG 241

Query: 245 LKKTLAKRQ 248
           LKKTLAKRQ
Sbjct: 242 LKKTLAKRQ 243

[Close]

BLAST of Cp4.1LG06g05650 vs. NCBI nr
Match: gi|778695374|ref|XP_011653984.1| (PREDICTED: transmembrane protein 56-like isoform X1 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 9.6e-87
Identity = 187/269 (69.52%), Postives = 208/269 (77.32%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVD------SNMLLSSFSSLCEFACPP 64
           S +SQA +LLKYLVLSDPVVPYISIPAG+LASKLV       S++   S+S+L       
Sbjct: 2   SLKSQAGELLKYLVLSDPVVPYISIPAGVLASKLVYDLTDMISSVYFKSYSNLSRIQ--- 61

Query: 65  PPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAG 124
                +   + AMST+HAIFITAA+LYMVFLSDL+SD+YF  ITFR+STIS FGLGVS G
Sbjct: 62  ----RVEWNNRAMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGVSVG 121

Query: 125 YFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 184
           YF TDL MILWFYPA+GGMEYV+HHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL
Sbjct: 122 YFITDLVMILWFYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 181

Query: 185 RWYLDTAGMKKSKAYLINGVVIFFAWL--------------------VLQMHAFGQLLVF 244
           RWYLDTAGMKKSKAYLING+VIFFAWL                    VLQMH FGQ LVF
Sbjct: 182 RWYLDTAGMKKSKAYLINGIVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHVFGQFLVF 241

Query: 245 VVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 248
           VVP +L +MN  WF+ IF+GLKKTLAKRQ
Sbjct: 242 VVPSILWIMNLTWFSKIFRGLKKTLAKRQ 263

[Close]

BLAST of Cp4.1LG06g05650 vs. NCBI nr
Match: gi|778695377|ref|XP_011653985.1| (PREDICTED: transmembrane protein 56-like isoform X2 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 1.4e-74
Identity = 153/198 (77.27%), Postives = 165/198 (83.33%), Query Frame = 1


Query: 70  AMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAGYFFTDLGMILW 129
           AMST+HAIFITAA+LYMVFLSDL+SD+YF  ITFR+STIS FGLGVS GYF TDL MILW
Sbjct: 25  AMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGVSVGYFITDLVMILW 84

Query: 130 FYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKK 189
           FYPA+GGMEYV+HHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKK
Sbjct: 85  FYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKK 144

Query: 190 SKAYLINGVVIFFAWL--------------------VLQMHAFGQLLVFVVPLVLSVMNC 248
           SKAYLING+VIFFAWL                    VLQMH FGQ LVFVVP +L +MN 
Sbjct: 145 SKAYLINGIVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHVFGQFLVFVVPSILWIMNL 204

[Close]

BLAST of Cp4.1LG06g05650 vs. NCBI nr
Match: gi|224085397|ref|XP_002307565.1| (hypothetical protein POPTR_0005s22760g [Populus trichocarpa])

HSP 1 Score: 287.0 bits (733), Expect = 3.2e-74
Identity = 168/273 (61.54%), Postives = 195/273 (71.43%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLV-DSNMLLS-----SFSSLCEF 60
           M++KSYQ  AE LLK  +L+ P++PY SI  GI A K+V D   L S     S+S+L   
Sbjct: 1   MAMKSYQINAELLLKEYLLAGPLIPYTSITGGIFACKMVYDLTSLFSAVYFKSYSNLTNL 60

Query: 61  ACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDR-YFSLITFRSSTISAFGL 120
                    +   + A+ST HA+FIT  SLY VF SDLFSD+ +  L+TFRSS +S F L
Sbjct: 61  Q-------RIEWNNRAISTFHAVFITMMSLYFVFCSDLFSDQPHAGLVTFRSSALSTFAL 120

Query: 121 GVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTT 180
           GVSAGYF  DLGMI+WFYP+LGGMEYV+HH LSL+AVAY+MLTGEGQLYTYMVLISETTT
Sbjct: 121 GVSAGYFIADLGMIIWFYPSLGGMEYVIHHSLSLIAVAYSMLTGEGQLYTYMVLISETTT 180

Query: 181 PGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVL--------------------QMHAFG 240
           PGINLRWYLDTAGMKKSKAYL+NGVVIFFAW V                     QMH+FG
Sbjct: 181 PGINLRWYLDTAGMKKSKAYLLNGVVIFFAWFVARILLFIYLFYHVFLHQYQVKQMHSFG 240

Query: 241 QLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKR 247
           +LL  VVP+VLSVMN MWF  IFKG+KKTLAKR
Sbjct: 241 RLLALVVPVVLSVMNLMWFWKIFKGMKKTLAKR 266

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g05650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g05650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1M1_CUCSA	1.7e-90	75.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614180 PE=4 SV=1	[more]
B9H849_POPTR	2.2e-74	61.54	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22760g PE=4 SV=1	[more]
A0A0D2V1E3_GOSRA	2.9e-74	63.86	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G039200 PE=4 SV=1	[more]
A0A151U271_CAJCA	8.0e-72	59.49	Transmembrane protein 56 OS=Cajanus cajan GN=KK1_005948 PE=4 SV=1	[more]
A0A0B2PW65_GLYSO	1.8e-71	60.22	Transmembrane protein 56-B OS=Glycine soja GN=glysoja_019966 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g05650 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19645.1	2.0e-66	53.09	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT1G31300.1	2.5e-64	51.46	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT4G10360.1	4.4e-37	42.05	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]

BLAST of Cp4.1LG06g05650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133576\|ref\|XP_008466799.1\|	1.4e-90	72.12	PREDICTED: transmembrane protein 56-like [Cucumis melo]	[more]
gi\|700199786\|gb\|KGN54944.1\|	2.5e-90	75.10	hypothetical protein Csa_4G614180 [Cucumis sativus]	[more]
gi\|778695374\|ref\|XP_011653984.1\|	9.6e-87	69.52	PREDICTED: transmembrane protein 56-like isoform X1 [Cucumis sativus]	[more]
gi\|778695377\|ref\|XP_011653985.1\|	1.4e-74	77.27	PREDICTED: transmembrane protein 56-like isoform X2 [Cucumis sativus]	[more]
gi\|224085397\|ref\|XP_002307565.1\|	3.2e-74	61.54	hypothetical protein POPTR_0005s22760g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR006634	TLC-dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g05650.1	Cp4.1LG06g05650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006634	TRAM/LAG1/CLN8 homology domain	PFAM	PF03798	TRAM_LAG1_CLN8	coord: 70..206 score: 1.9
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 61..244 score: 1.1
IPR006634	TRAM/LAG1/CLN8 homology domain	PROFILE	PS50922	TLC	coord: 61..244 score: 25
None	No IPR available	PANTHER	PTHR13439	CT120 PROTEIN	coord: 18..245 score: 2.3
None	No IPR available	PANTHER	PTHR13439:SF17	SUBFAMILY NOT NAMED	coord: 18..245 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g05650	Cucsa.058760	Cucumber (Gy14) v1	cgycpeB0074
Cp4.1LG06g05650	CmaCh09G007270	Cucurbita maxima (Rimu)	cmacpeB060
Cp4.1LG06g05650	CmaCh01G013220	Cucurbita maxima (Rimu)	cmacpeB511
Cp4.1LG06g05650	CmoCh01G013760	Cucurbita moschata (Rifu)	cmocpeB461
Cp4.1LG06g05650	CmoCh09G007210	Cucurbita moschata (Rifu)	cmocpeB034
Cp4.1LG06g05650	Cla023241	Watermelon (97103) v1	cpewmB776
Cp4.1LG06g05650	Csa4G614180	Cucumber (Chinese Long) v2	cpecuB786
Cp4.1LG06g05650	ClCG11G016570	Watermelon (Charleston Gray)	cpewcgB695
Cp4.1LG06g05650	CSPI04G21700	Wild cucumber (PI 183967)	cpecpiB788
Cp4.1LG06g05650	Lsi04G018920	Bottle gourd (USVL1VR-Ls)	cpelsiB639
Cp4.1LG06g05650	CsaV3_4G032030	Cucumber (Chinese Long) v3	cpecucB0973
Cp4.1LG06g05650	Bhi09G002995	Wax gourd	cpewgoB0990
Cp4.1LG06g05650	CsGy4G020220	Cucumber (Gy14) v2	cgybcpeB566
Cp4.1LG06g05650	Carg20045	Silver-seed gourd	carcpeB1455
Cp4.1LG06g05650	Carg24719	Silver-seed gourd	carcpeB0910

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG06g05650	Cp4.1LG02g02680	Cucurbita pepo (Zucchini)	cpecpeB463

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g05650	Melon (DHL92) v3.5.1	cpemeB730
Cp4.1LG06g05650	Melon (DHL92) v3.6.1	cpemedB863
Cp4.1LG06g05650	Silver-seed gourd	carcpeB0432
Cp4.1LG06g05650	Cucurbita pepo (Zucchini)	cpecpeB469
Cp4.1LG06g05650	Cucurbita maxima (Rimu)	cmacpeB503
Cp4.1LG06g05650	Cucurbita moschata (Rifu)	cmocpeB469