CmoCh01G013760 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G013760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein
Location	Cmo_Chr01 : 10831527 .. 10835650 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTAATGATGTATATGGAGGCATTGCGTGGATGGTATATAAGAGGGCTTCTCTGGAATCTTCGTACCGTGGTGGTTAACGCCAACGAGCGCAGCGTAGCGCAAGAAAGGAAGAGACTGAAACTTCGTATTGTTTTGTGCGTTGCTTTGGGCCCAATCACCTCACCTCACCTCACCCAAATCCTTCTCTCTCTCCTTCTTCCATATCTAACAGAAATTTTCATATTTCTATAGTCCTCTCATCAATTCGTTCTCTTATTTCTTCCTCATTTTGATTTTCATTTTCCACGATTCTACTACTTTTTCCTCTATCTACGCAGTCGTGATTGGTTGACAAGTTTTCTCTGCGCGTCGCGGCGTTTTCTGGCGATTTTCCGGTGAGTTTTTCTGGTTCCGGTGATCTCTTTGATGATTTTTGGTTATCGATTTGTTTTGGTTGATGTTCTGTTCGAACGCGCATTTCTCTGTTATTATTATTATTTTATTTGTGTTTTTAATTGAGTTGTTTTGTGCTTAATCCGTGTTTTTGTTTTTTTTTTTTTTTTCATTTAGTTTGGTTGATTGCTTTTGTTGCTGCGTTAGGATTGAGTAATTGGTGTTTGGACTGCCGTTGTGAAACTTGCTGTTTGCTGTTGATGCTTTGGACAATCTTCTTCGTGTTTCGATGGTCTTGATGAGTGTGAATTTGAATTCTACTTGTTATTTCTTTCTTTTTTCAGTGTGATTGGTTTCTTTTATTGCTGCGTTGGAAATTGATGTTGGACTGCATTTATGAAACTTGCTGATTCTTGCTGATGTTTTTGGACGATCATCTTCGTGTTTGGATTTCGGTGATTGGTGTAAATTTGAATTCTACACGTTTATTTCTTTCTTCTTTCAGCGTGATTGCATTTGTTGATGGATTAGAAATTGATGTTGGTCTGCATTTGTGAAACTTGCTTATTGCTGTTCATGTTGTTGGATGATTCTTCGCGATTTGATTTTTGTATTAGTGTAGTGTGAATTTTACATACTGCGCTACTCTGAAGTTAGTTCTCGGCTTGTGCTAGGTTAGTTTTATCTTTCAGTTCCTTTGTCGTGTAGAACTTTATCTTTCATGCTTAATCCGTGTTTCTTTTGTTTTTGTTTTTTAAAATTAATGAATTGATGTTTTCCAGTGTGATTGATTGTTTTTTTTTTTTTTTTCTGTATTAGGAATTTATATTAGACTTCCATTGTGAAACTTGCTGGTTGTTTTTGGTGTCTTTGGAGGACGATCTTCTTTGTATTTCAATTTTTGTGATAAGTGTAAATGTGAATTTTACATACCTTGAGACTTTTGGCCAATTCACTATAATTGTGTTGGTAGTTTTTATCCTTCAATTTCTTGGTTGAGGTTGTTATGTACTATCATTCTTGTAGAACTTTATTGGATTGTTTGCTTATGTTGGTTGAGGAGGTGCTTTTTGTATGATCAGCCAGTGACTAAGAGATTTTAGAAGCTTGGCTGTACTTGTACATTTAGAGATTTTGTCTCAAAGATTGTGATATGTTATTAGCAATCTTAGCAACATGCAATATTGTTTCAGTTTGTCACTAACAGCACGTCCTAGGTATTTAATCTAAGTAACTTTTTATGTGCATCTGGAAGGTGGATAGCTGAGCAATGGACCTAATAATCGTAACATTTAAGTGTATTCCCAATTTCTACCAGTAAAAACTAGGAATAAAATCATCAAATGTTGTTGTTCTCCAATGTTGACCGAGCTGATTAGTTTGTGAATTATCAATTATGTAGTATTTTATTGAAACAGGCCTGTAGGCCAGTACTTTGTAATGACTAATGATTTATCTTCTGTCTGCTTCCTTTTGCATATTAACACAATACAAATAAAAATCTCACATGCTATCCCCAAAAATATGGCCACCCCTGCTGAGCACTCTCTCTTTCCCTCCCTCAAGTTAGTAGGAAACAGAAACTTTTCATTAGATAGCATAAAATTATTATGAGAGATGAGACATTAACCCAAGTAAAATTCCATGGTTTGAAAAAAGTTCTTCCGGTTGGCAGTGGAAGGAAAAGAATTCTACCTAGATGAGTTTTGAATGGTAGAACCACTCCATTCCCCCCACTCATGGAAAAGGGGGGAATTACTAGTTATTAATTACAGAAGTAAAGCTTCACTAGGAGGCCTTAAATTTGATAAGCCTATAGTACCTCTCCAACCACAATTCCATAACTAGGATTTTAGAGCACACTGCCACAACAGTCTAGCCATCCATTTAAAAGCAAATTTTTATTTGTACTCTCTGCTTAATGCTTTCTAGTTTCTCCTAGTGTTTTGGGTTGACCTTTATAGATGGTGAATGTGAATAACGCTCTTGTTATTTGAATTATTGCCATCAGCATTTTTTAAGGAAAAATATATAGATAAATTGTGAATTCTCTTTGCACTCCTGCAGGATATTACATAGAATAAAACTAAAATGGGAAGTAGTCGAATAGCAGATGATGATAATATGATGTGCCCTTTTTGTTTCCACTCAGATCATTGACTTGTTGCACTGATCTTGCTTAGTTACTTGTTTTTAACTCTCCCATGTTCTCTAGTATTCTTCATTTAAGTTGGTTAAGTTGCTGACCTATTATTTTGAAGACAGTTATAAAGAGGTAGAGAAGAAGTTAAATAATTTGGAGGAATTGGGCCTCTTGCTATTTCTTTTTGAAAACGTGGCATGCTGTAACCCCAGATTGAAACAAGCAATCATGTCACTGAAGTCATATCAAAGCCAGGCCGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCTGCAGGCATACTTGCTAGCAAATTGGTACCTTCCCGTCATCTGTGGCTCTTTTTTATCTTATTCAGTGTGGGTACTTTGCATGCGAGTTAATCTTCTGTTCAATCATCATGATGTTAAAAGGTTGATAATATGCTAGCAATTAGTTTCTCTTCTTGTGTGATTTTGCATGCCTTTTATCTTTTTTTGCTGGTCATTTGTAAATCAACCCTTGGTTTCCAGGTCTATGATCTGACTGATTTGATCAGCGGTGTTTACTTCAAGAGTTACTCTAACCTTTCCAGGATTCAGCGAATGGAGTGGAACAACCGGTAAATGATCTTTCCCTTGCTTGCATATATTTATTTATTTTTCCTTGCAATATTTTTTTTATGAGTACTTGCTGTTTTTACAGGGCAATGTCAACCCTCCATGCTATTTTCATCACAGCAGCATCATTGTACATGGTGTTTTTGTCTGATCTCTATTCGGACCGATATTTTGGCTTTATTACCTTTCGTAGTTCGACAATATCGACATTTTGCCTGGGAGTAAGTGCAATCTCTGCATATATATGAGTAGGTTATTACCATAGTGTGGGAAACTTTGTGATATGTTGTAGATGTTAAGAAGTGCCTCGGCTTTGTCCAGCTTAAAAACCATGTTGTGATAACAATAAAGATGAAAGGTTAAGAGTTTCAGGGGCTAGCGCTAACTCTTGAAAAAAATGTCCTGATCAGGTCCTACGGATGAGGATGGAAAGGAAATGTGTACATTTGAGATTAGTGTTTTGCAGAAGTTATTGGAGCAGATGATAGAGATTGTTGGCACTAGCCGATCAAATCATCGGTCATAATAATCCCTAGTTTCTCATGTAGAAGACAAAAGTGGTTTTAAGCTTTATTTATGCTGGAAGTAGTGAATGGAGTGTTGGGAGCGAGACAGAGAGTTGTGTTCTCTAATGTTGCATGTTCATAAATAATACTCTTGATTGAAAATATTTAAACCGCTGTGTTTTCAAGCAGTCTGAAAATCTATGTTGATTTTTTTGGAGATGTTTCGATAAAATAGCATATCTAAGCTGACTTTTCTCCAACAGTTGCTCTTATGACTCTGGATTTTTAGTTGTTTTATTATCTTTTGGAGGAGGGAGGTAGAGTGAGGGGAGTGGCCAACTTGAACTGCCTTTTCTGTATTGGACGATCTCTATCTATCTTCCTTCTGTTTCTCATGTCCACCTTTTTAAACTTAAGCTCTTCATGTTTTAGTTGCAACCAGCAACCTGCAACACCAACCATTATATCCAGAATTGA

mRNA sequence

TATTAATGATGTATATGGAGGCATTGCGTGGATGGTATATAAGAGGGCTTCTCTGGAATCTTCGTACCGTGGTGGTTAACGCCAACGAGCGCAGCGTAGCGCAAGAAAGGAAGAGACTGAAACTTCGTATTGTTTTGTGCGTTGCTTTGGGCCCAATCACCTCACCTCACCTCACCCAAATCCTTCTCTCTCTCCTTCTTCCATATCTAACAGAAATTTTCATATTTCTATAGTCCTCTCATCAATTCGTTCTCTTATTTCTTCCTCATTTTGATTTTCATTTTCCACGATTCTACTACTTTTTCCTCTATCTACGCAGTCGTGATTGGTTGACAAGTTTTCTCTGCGCGTCGCGGCGTTTTCTGGCGATTTTCCGACAGTTATAAAGAGGTAGAGAAGAAGTTAAATAATTTGGAGGAATTGGGCCTCTTGCTATTTCTTTTTGAAAACGTGGCATGCTGTAACCCCAGATTGAAACAAGCAATCATGTCACTGAAGTCATATCAAAGCCAGGCCGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCTGCAGGCATACTTGCTAGCAAATTGGTCTATGATCTGACTGATTTGATCAGCGGTGTTTACTTCAAGAGTTACTCTAACCTTTCCAGGATTCAGCGAATGGAGTGGAACAACCGGGCAATGTCAACCCTCCATGCTATTTTCATCACAGCAGCATCATTGTACATGGTGTTTTTGTCTGATCTCTATTCGGACCGATATTTTGGCTTTATTACCTTTCGTAGTTCGACAATATCGACATTTTGCCTGGGATTGCAACCAGCAACCTGCAACACCAACCATTATATCCAGAATTGA

Coding sequence (CDS)

ATGTCACTGAAGTCATATCAAAGCCAGGCCGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCTGCAGGCATACTTGCTAGCAAATTGGTCTATGATCTGACTGATTTGATCAGCGGTGTTTACTTCAAGAGTTACTCTAACCTTTCCAGGATTCAGCGAATGGAGTGGAACAACCGGGCAATGTCAACCCTCCATGCTATTTTCATCACAGCAGCATCATTGTACATGGTGTTTTTGTCTGATCTCTATTCGGACCGATATTTTGGCTTTATTACCTTTCGTAGTTCGACAATATCGACATTTTGCCTGGGATTGCAACCAGCAACCTGCAACACCAACCATTATATCCAGAATTGA

Homology

[Close]

BLAST of CmoCh01G013760 vs. TrEMBL
Match: A0A0A0L1M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614180 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.7e-44
Identity = 95/110 (86.36%), Postives = 105/110 (95.45%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRME 64
           S +SQA +LLKYLVLSDPVVPYISIPAG+LASKLVYDLTD+IS VYFKSYSNLSRIQR+E
Sbjct: 2   SLKSQAGELLKYLVLSDPVVPYISIPAGVLASKLVYDLTDMISSVYFKSYSNLSRIQRVE 61

Query: 65  WNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFITFRSSTISTFCLGL 115
           WNNRAMST+HAIFITAA+LYMVFLSDLYSD+YFG ITFR+STISTF LG+
Sbjct: 62  WNNRAMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGV 111

[Close]

BLAST of CmoCh01G013760 vs. TrEMBL
Match: F6H578_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01000 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.2e-32
Identity = 74/115 (64.35%), Postives = 92/115 (80.00%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRI 60
           M +KSYQ+QAE LLK  VL+D  +PY SI  G++A K+VYDLT LIS V+FKS+S+LS++
Sbjct: 9   MEIKSYQNQAEALLKEYVLADSFIPYASIIGGLVACKMVYDLTQLISAVHFKSFSSLSKV 68

Query: 61  QRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYF-GFITFRSSTISTFCLGL 115
           QR EWNNR++ST HAIFIT  SLY VF SDLYSD    GF+TFRSS++STF LG+
Sbjct: 69  QRNEWNNRSISTFHAIFITVMSLYFVFWSDLYSDELLAGFVTFRSSSLSTFSLGV 123

[Close]

BLAST of CmoCh01G013760 vs. TrEMBL
Match: A0A0K9RXY5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_022070 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-31
Identity = 71/115 (61.74%), Postives = 96/115 (83.48%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRI 60
           M++KSYQ+QAE L+K  +LSDP++PY SI AGILA K++Y+LT L S +YFKSY+ L+++
Sbjct: 9   MAIKSYQNQAENLVKNHLLSDPIIPYTSIIAGILACKVIYNLTQLFSALYFKSYTGLNKV 68

Query: 61  QRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSD-RYFGFITFRSSTISTFCLGL 115
           QR+EW+NR +ST+HA+FI A SLY VF SDLY+D +  GF+TFRSST+STF LG+
Sbjct: 69  QRIEWSNRGISTVHALFIAAMSLYFVFWSDLYADFQTNGFVTFRSSTLSTFTLGV 123

[Close]

BLAST of CmoCh01G013760 vs. TrEMBL
Match: A0A067K312_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16957 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-31
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRI 60
           M++KSYQ QAE LLK  +L+D  +PY SI  GI + K+VYDLT   S VYFKSYSNL+++
Sbjct: 1   MAIKSYQDQAELLLKEYLLADSFIPYTSIIVGIFSCKMVYDLTRFFSAVYFKSYSNLTKM 60

Query: 61  QRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFITFRSSTISTFCLGL 115
           QR+EWNNRA+STLHAIFIT  SLY+VF S L+SD + G ITF+SS++STF LG+
Sbjct: 61  QRIEWNNRAISTLHAIFITVISLYLVFCSKLFSDSHAGLITFQSSSLSTFALGV 114

[Close]

BLAST of CmoCh01G013760 vs. TrEMBL
Match: A0A0J8BRW2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g187660 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-31
Identity = 72/115 (62.61%), Postives = 94/115 (81.74%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRI 60
           M++KSYQ+QAE L+K  +LSD V+PY SI AGIL  K++Y+LT L S +YFKSY+ L+R+
Sbjct: 9   MAIKSYQNQAENLVKNHLLSDSVIPYTSIIAGILVCKVIYNLTQLFSALYFKSYAGLNRV 68

Query: 61  QRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSD-RYFGFITFRSSTISTFCLGL 115
           QR+EWNNR +ST+HA+FI A SLY VF SDLY+D +  GF+TFRSST+STF LG+
Sbjct: 69  QRIEWNNRGISTVHALFIAAMSLYFVFWSDLYADFQTNGFVTFRSSTLSTFTLGV 123

[Close]

BLAST of CmoCh01G013760 vs. TAIR10
Match: AT4G19645.1 (AT4G19645.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 118.6 bits (296), Expect = 2.7e-27
Identity = 62/116 (53.45%), Postives = 87/116 (75.00%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRI 60
           M +KSYQ+QAE  +++ +L+DP +PY S+  GI   KLVYDLT+L S ++ KSYS L++I
Sbjct: 1   MEIKSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKI 60

Query: 61  QRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSD-RYFGFIT-FRSSTISTFCLGL 115
           +R+EWNNR +ST+HAIFI+  +LY  F SDL+SD R    +T FR+S +STF LG+
Sbjct: 61  KRIEWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFGLGV 116

[Close]

BLAST of CmoCh01G013760 vs. TAIR10
Match: AT1G31300.1 (AT1G31300.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 115.2 bits (287), Expect = 3.0e-26
Identity = 59/114 (51.75%), Postives = 82/114 (71.93%), Query Frame = 1


Query: 2   SLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQ 61
           ++KSY  QA+ L+K  +L+DP +PY S+  GI   K+VYDL   IS  + K+Y  L++IQ
Sbjct: 11  AIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYIILTKIQ 70

Query: 62  RMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFG-FITFRSSTISTFCLGL 115
           R+EWNNR +ST+HAIFI+A SLY VF SDL+SDR+    + FRSS +S+  LG+
Sbjct: 71  RIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

[Close]

BLAST of CmoCh01G013760 vs. TAIR10
Match: AT4G10360.1 (AT4G10360.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1


Query: 28  SIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVF 87
           SI +G L  K+VYDLT  IS + F  Y  L    RMEWNNR  ST HA+F + AS+Y + 
Sbjct: 20  SICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFHAVFTSVASIYFLV 79

Query: 88  LSDLYSDRYFGFITFRSST 107
           +SD + +   G     S+T
Sbjct: 80  ISDQFDENVHGDSVINSTT 98

[Close]

BLAST of CmoCh01G013760 vs. NCBI nr
Match: gi|659133576|ref|XP_008466799.1| (PREDICTED: transmembrane protein 56-like [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 8.6e-47
Identity = 101/110 (91.82%), Postives = 107/110 (97.27%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRME 64
           S +SQAEQLLKYLVLSDPVVPYISIPAG+LASKLVYDLTDLISGVYFKSYSNLSRIQR+E
Sbjct: 2   SLKSQAEQLLKYLVLSDPVVPYISIPAGVLASKLVYDLTDLISGVYFKSYSNLSRIQRVE 61

Query: 65  WNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFITFRSSTISTFCLGL 115
           WNNRAMST+HAIFITAA+LYMVFLSDLYSDRYFG ITFRSSTISTF LG+
Sbjct: 62  WNNRAMSTVHAIFITAAALYMVFLSDLYSDRYFGPITFRSSTISTFGLGV 111

[Close]

BLAST of CmoCh01G013760 vs. NCBI nr
Match: gi|778695374|ref|XP_011653984.1| (PREDICTED: transmembrane protein 56-like isoform X1 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 6.8e-44
Identity = 95/110 (86.36%), Postives = 105/110 (95.45%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRME 64
           S +SQA +LLKYLVLSDPVVPYISIPAG+LASKLVYDLTD+IS VYFKSYSNLSRIQR+E
Sbjct: 2   SLKSQAGELLKYLVLSDPVVPYISIPAGVLASKLVYDLTDMISSVYFKSYSNLSRIQRVE 61

Query: 65  WNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFITFRSSTISTFCLGL 115
           WNNRAMST+HAIFITAA+LYMVFLSDLYSD+YFG ITFR+STISTF LG+
Sbjct: 62  WNNRAMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGV 111

[Close]

BLAST of CmoCh01G013760 vs. NCBI nr
Match: gi|700199786|gb|KGN54944.1| (hypothetical protein Csa_4G614180 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 6.8e-44
Identity = 95/110 (86.36%), Postives = 105/110 (95.45%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRME 64
           S +SQA +LLKYLVLSDPVVPYISIPAG+LASKLVYDLTD+IS VYFKSYSNLSRIQR+E
Sbjct: 2   SLKSQAGELLKYLVLSDPVVPYISIPAGVLASKLVYDLTDMISSVYFKSYSNLSRIQRVE 61

Query: 65  WNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFITFRSSTISTFCLGL 115
           WNNRAMST+HAIFITAA+LYMVFLSDLYSD+YFG ITFR+STISTF LG+
Sbjct: 62  WNNRAMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGV 111

[Close]

BLAST of CmoCh01G013760 vs. NCBI nr
Match: gi|1009127293|ref|XP_015880620.1| (PREDICTED: transmembrane protein 56-B-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-33
Identity = 76/115 (66.09%), Postives = 94/115 (81.74%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRI 60
           M++K+YQ QAEQLLK  VL+D  VPYIS+  GILA K+VYDLT LIS +YFKSYSNLSR+
Sbjct: 9   MAIKAYQDQAEQLLKEYVLADSFVPYISVVGGILACKMVYDLTQLISSIYFKSYSNLSRM 68

Query: 61  QRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSD-RYFGFITFRSSTISTFCLGL 115
           QR+EWNNRA+ST+HA+FIT  SLY VF SDL+SD +  G +T R+S +STF LG+
Sbjct: 69  QRVEWNNRAISTIHAVFITVLSLYFVFWSDLFSDYQLGGLVTLRTSPLSTFVLGV 123

[Close]

BLAST of CmoCh01G013760 vs. NCBI nr
Match: gi|1009127291|ref|XP_015880619.1| (PREDICTED: transmembrane protein 56-B-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-33
Identity = 76/115 (66.09%), Postives = 94/115 (81.74%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRI 60
           M++K+YQ QAEQLLK  VL+D  VPYIS+  GILA K+VYDLT LIS +YFKSYSNLSR+
Sbjct: 9   MAIKAYQDQAEQLLKEYVLADSFVPYISVVGGILACKMVYDLTQLISSIYFKSYSNLSRM 68

Query: 61  QRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSD-RYFGFITFRSSTISTFCLGL 115
           QR+EWNNRA+ST+HA+FIT  SLY VF SDL+SD +  G +T R+S +STF LG+
Sbjct: 69  QRVEWNNRAISTIHAVFITVLSLYFVFWSDLFSDYQLGGLVTLRTSPLSTFVLGV 123

The following BLAST results are available for this feature:

BLAST of CmoCh01G013760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G013760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1M1_CUCSA	4.7e-44	86.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614180 PE=4 SV=1	[more]
F6H578_VITVI	9.2e-32	64.35	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01000 PE=4 SV=...	[more]
A0A0K9RXY5_SPIOL	1.2e-31	61.74	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_022070 PE=4 SV=1	[more]
A0A067K312_JATCU	1.2e-31	63.16	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16957 PE=4 SV=1	[more]
A0A0J8BRW2_BETVU	2.7e-31	62.61	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g187660 PE=4 S...	[more]

BLAST of CmoCh01G013760 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19645.1	2.7e-27	53.45	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT1G31300.1	3.0e-26	51.75	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT4G10360.1	3.3e-12	44.30	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]

BLAST of CmoCh01G013760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133576\|ref\|XP_008466799.1\|	8.6e-47	91.82	PREDICTED: transmembrane protein 56-like [Cucumis melo]	[more]
gi\|778695374\|ref\|XP_011653984.1\|	6.8e-44	86.36	PREDICTED: transmembrane protein 56-like isoform X1 [Cucumis sativus]	[more]
gi\|700199786\|gb\|KGN54944.1\|	6.8e-44	86.36	hypothetical protein Csa_4G614180 [Cucumis sativus]	[more]
gi\|1009127293\|ref\|XP_015880620.1\|	5.4e-33	66.09	PREDICTED: transmembrane protein 56-B-like isoform X2 [Ziziphus jujuba]	[more]
gi\|1009127291\|ref\|XP_015880619.1\|	5.4e-33	66.09	PREDICTED: transmembrane protein 56-B-like isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G013760.1	CmoCh01G013760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13439	CT120 PROTEIN	coord: 18..114 score: 1.7
None	No IPR available	PANTHER	PTHR13439:SF17	SUBFAMILY NOT NAMED	coord: 18..114 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G013760	Cucsa.058760	Cucumber (Gy14) v1	cgycmoB0074
CmoCh01G013760	CmaCh09G007270	Cucurbita maxima (Rimu)	cmacmoB051
CmoCh01G013760	CmaCh01G013220	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G013760	Cla023241	Watermelon (97103) v1	cmowmB453
CmoCh01G013760	Csa4G614180	Cucumber (Chinese Long) v2	cmocuB455
CmoCh01G013760	MELO3C022964	Melon (DHL92) v3.5.1	cmomeB431
CmoCh01G013760	ClCG11G016570	Watermelon (Charleston Gray)	cmowcgB387
CmoCh01G013760	CSPI04G21700	Wild cucumber (PI 183967)	cmocpiB459
CmoCh01G013760	Lsi04G018920	Bottle gourd (USVL1VR-Ls)	cmolsiB415
CmoCh01G013760	Cp4.1LG02g02680	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G013760	Cp4.1LG06g05650	Cucurbita pepo (Zucchini)	cmocpeB461
CmoCh01G013760	MELO3C022964.2	Melon (DHL92) v3.6.1	cmomedB495
CmoCh01G013760	CsaV3_4G032030	Cucumber (Chinese Long) v3	cmocucB0543
CmoCh01G013760	Cla97C11G222500	Watermelon (97103) v2	cmowmbB430
CmoCh01G013760	Bhi09G002995	Wax gourd	cmowgoB0620
CmoCh01G013760	CsGy4G020220	Cucumber (Gy14) v2	cgybcmoB477
CmoCh01G013760	Carg20045	Silver-seed gourd	carcmoB1401

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G013760	CmoCh09G007210	Cucurbita moschata (Rifu)	cmocmoB022

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G013760	Cucurbita moschata (Rifu)	cmocmoB013
CmoCh01G013760	Cucurbita maxima (Rimu)	cmacmoB041
CmoCh01G013760	Melon (DHL92) v3.5.1	cmomeB423
CmoCh01G013760	Melon (DHL92) v3.5.1	cmomeB439
CmoCh01G013760	Cucurbita pepo (Zucchini)	cmocpeB469
CmoCh01G013760	Melon (DHL92) v3.6.1	cmomedB487
CmoCh01G013760	Melon (DHL92) v3.6.1	cmomedB503
CmoCh01G013760	Silver-seed gourd	carcmoB0881
CmoCh01G013760	Silver-seed gourd	carcmoB1400