Carg24719 (gene) Silver-seed gourd

Overview
NameCarg24719
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptiontransmembrane protein 56-like
LocationCucurbita_argyrosperma_scaffold_270 : 165904 .. 168672 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCTTCTGCAGGTTTCTGTTGGTTACTTCATAACTGATCTTGGGATGATCTCTTGGTTTTATCCTTCCCTTGGTGGAATGGAGTATGTAAGTGCATTCTCCCTTTAAATATTGCCGATTGTTTTATATTCCTGTCATATTATCTTGTGTTCTTTAGGGGAAAGAGATAGTGTGGGAAAAATTTGTTATTCATGGAAGGTGATAATGTTGTGTTTTCCAGGTGATACATCATCTTCTTTCTCTCGTAGCTGTGGCCTATGCTATGTTGACGGGTGAGGGGCAACTTTACACCTTCATGGTTCTCATCTCTGAGACGACAACTCCTGGGATCAATTTGAGATGGTGACTTGCTATTAATAAATTATCAAGTGAAATAGGATTTGATCTTGACTTCAGAATTTTCTCGTTTCTGTTTGTCAAGGGACTGGATATATCTCTGTGTCGTATATATAGCATTTCCTCAGAAAAGTTTTTTCTTTTTTTTTTTTCCTTCAACTTTGCGTAGGTACCTTGACACAGCTGGAATGAAGAAGTCAAAGGCATACCTCATAAATGGGGTTGTAATATTCTTCGCTTGGCTGGTGAGTCAAAATATCCGATTACTATATATTTCTTTTGAAATCTGTTCCATAACCATGGAGAGTAGCGAACAGAGCAATTTAACCCTATGTATTCCATACGTAAGCGGTTAGCCAATATTTTATTTTCAGGTTGCCAGAATTCTACTGTTCATGTACATGTTTTACCATGTCTACTTGCACTTGAATCAGGTACACTCATCAATCATACTTTTCTTAGCTTGATAATATTCAGTCAATTATTTCTTGAAGTACACTACTGTTTGCACATTGATTGGCAAAGCATCTGCAATCTGTTACTGCTCATATGATCATTTGGGAATCGAATTACAAATATATAATTGTTTGAAAGTACGTACTCGTCGGACTGCATGCACCAAATGAAACATGTGGCACATATATATATTTATTTGCTTGTTTGGTTTTTTTTCTAGGAAATATTTTTGATGCTATGATTTTTTTTAAGAAGAAATAAATAAAGCAAAAGAAAGAGAACACCATCTAGATGAAGTTATAAAAAAACTTCTCCAATTACTGAGAGCTCGTACTATAATTGCAAAAAATAAGAAAAATATTTACCAATGTGAGTATAATTCAACCGTTAAAAACATTTATTTCTTTCATTGACGTTGGAAGTTTAAATTCACATTCCACATTTAGAGACTTGGAGAAAGTTTTGTTGCCTCCTTATTTCAGAAAATTTTGGGGTTTCTCTTCCCGAATCATTGTCTAAATTTACCAACCCTGACTTATGAATTATGGTATTGATTTTTGCGATATGAAGTGTTTTAGCATCATCTCTCTCTTTGGGGTCCCCTTTTCAAGTGCTTTAACCTGTGAGATCAATCTTGTGTTTTAGGAGAATAATTATGGATCATAGCTGCCATTTAAATCAGAGCCTCCCTACGGTGTCTGATGATTACATTTAATTTTATATTGTTATTTATTTAATAATTTAATGTTAGTGTATATATATATATATATATATATATTCTGTAAGAAAGTATTGACTAATTGAGAAAGGGTCATAAAAAGGGGAGGGATGTGATATTCCACCTGCCGAAAGAGTAGCAAAAAGGTGTCTCGATATTGGTAAAAAATACAAAAGATACTAGACAGACAACACCAGATTGAGGTAAAGAGATAATTCGAGTCCCAAAACTTGGGGTTCACTTACTCCAATAACTTTACTTCGATTCCCAAATACCCAACACGAGATGGTTGGGTCTTCGGGTTGTTAAGTCGGGGATGATTGAGCCCAGTGAAGCTAGAAAGATGAATGAGGAGTTTAAAAATTTTTCAACCAAATCTCTCAACTAGGGAGAGAGGCGAGCACTAGAGGGTGAGAGATGTTTGGCTTGGTTTCTTTTAAAATAAAATTTTCTGCATGTAGCAAGGGCGAGCATGTTGGACCGAAATCGACATTGGTAGTGATCTGGAGTGAATAAGTAGGTGGTGAGAGAGAAATATGATGAGAAAAATATGAAAGATAGGAATGGAATGTGGATGCTGGTTGATTTATTTCATGGAACATGCAATCCTTCTTTTACTTTGAGTTGAATCAATATTTGTCTTTTGAACTCGTAAACTGATTCGAAATTTTGATTGTTAGAAAAATTTAATGGAAAATTCAATTAATTCTATTTAATTCTATCTAATTTTTATGGTTTGGGTTGGATTGTTTGATTTTTCCCGGTGTCAGATTAGTTGAATATCCCCATTCAAAACTCCTTATGATTTAGATAAAGTGGTCAAAATATTGTGAGTGATTAGAAACATTATTTGTGTGTTACATCTATAGTTTTTTTTTTTTTTTTCAATGAATCTATTCTCATCAGTAACAGCCTGCAAACAAATTCGTGTCTTACTTGCTTGAGAAAATGAATTAAAAACTCGTCTTTTGAACTTTACAGGTTCTCCAGATGCATGCTTTCGGGCAGCTTTTGGTGTTTGTGGTTCCATTGGTATTATCAGTGATGAACTTGATGTGGTTTGCGAAAATCTTCAGAGGATTGAAAAAGACATTAGCAAAGAGACAATGAACGGAATAACACACCTGCCTGCTATTTAGGCCACCCAGTAAAAGGTACTGAAAAAAAAAGGTCTCTTTCTTGTACATGTTGAAGTTGTACAATTTCATGTTAAACAAGTACATAAATAGATAGCATTTAGAAGGCAAAATAAATTG

mRNA sequence

ATGACGCTTCTGCAGGTTTCTGTTGGTTACTTCATAACTGATCTTGGGATGATCTCTTGGTTTTATCCTTCCCTTGGTGGAATGGAGTATGTGATACATCATCTTCTTTCTCTCGTAGCTGTGGCCTATGCTATGTTGACGGGTGAGGGGCAACTTTACACCTTCATGGTTCTCATCTCTGAGACGACAACTCCTGGGATCAATTTGAGATGGTACCTTGACACAGCTGGAATGAAGAAGTCAAAGGCATACCTCATAAATGGGGTTGTAATATTCTTCGCTTGGCTGGTTGCCAGAATTCTACTGTTCATGTACATGTTTTACCATGTCTACTTGCACTTGAATCAGGTTCTCCAGATGCATGCTTTCGGGCAGCTTTTGGTGTTTGTGGTTCCATTGGTATTATCAGTGATGAACTTGATGTGGTTTGCGAAAATCTTCAGAGGATTGAAAAAGACATTAGCAAAGAGACAATGAACGGAATAACACACCTGCCTGCTATTTAGGCCACCCAGTAAAAGGTACTGAAAAAAAAAGGTCTCTTTCTTGTACATGTTGAAGTTGTACAATTTCATGTTAAACAAGTACATAAATAGATAGCATTTAGAAGGCAAAATAAATTG

Coding sequence (CDS)

ATGACGCTTCTGCAGGTTTCTGTTGGTTACTTCATAACTGATCTTGGGATGATCTCTTGGTTTTATCCTTCCCTTGGTGGAATGGAGTATGTGATACATCATCTTCTTTCTCTCGTAGCTGTGGCCTATGCTATGTTGACGGGTGAGGGGCAACTTTACACCTTCATGGTTCTCATCTCTGAGACGACAACTCCTGGGATCAATTTGAGATGGTACCTTGACACAGCTGGAATGAAGAAGTCAAAGGCATACCTCATAAATGGGGTTGTAATATTCTTCGCTTGGCTGGTTGCCAGAATTCTACTGTTCATGTACATGTTTTACCATGTCTACTTGCACTTGAATCAGGTTCTCCAGATGCATGCTTTCGGGCAGCTTTTGGTGTTTGTGGTTCCATTGGTATTATCAGTGATGAACTTGATGTGGTTTGCGAAAATCTTCAGAGGATTGAAAAAGACATTAGCAAAGAGACAATGA

Protein sequence

MTLLQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETTTPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAFGQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ
Homology
[Close]
BLAST of Carg24719 vs. NCBI nr
Match: XP_022940088.1 (transmembrane protein 56-like [Cucurbita moschata] >XP_022940089.1 transmembrane protein 56-like [Cucurbita moschata] >XP_022940090.1 transmembrane protein 56-like [Cucurbita moschata] >XP_022940091.1 transmembrane protein 56-like [Cucurbita moschata] >XP_022940092.1 transmembrane protein 56-like [Cucurbita moschata] >XP_023525630.1 transmembrane protein 56-like [Cucurbita pepo subsp. pepo] >XP_023525631.1 transmembrane protein 56-like [Cucurbita pepo subsp. pepo] >XP_023525633.1 transmembrane protein 56-like [Cucurbita pepo subsp. pepo] >XP_023525634.1 transmembrane protein 56-like [Cucurbita pepo subsp. pepo] >XP_023525635.1 transmembrane protein 56-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 296.2 bits (757), Expect = 6.6e-77
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L VSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT
Sbjct: 112 LGVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 171

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF
Sbjct: 172 TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 231

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 159
           GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ
Sbjct: 232 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 266

[Close]
BLAST of Carg24719 vs. NCBI nr
Match: XP_022982442.1 (transmembrane protein 56-like [Cucurbita maxima] >XP_022982443.1 transmembrane protein 56-like [Cucurbita maxima] >XP_022982444.1 transmembrane protein 56-like [Cucurbita maxima] >XP_022982447.1 transmembrane protein 56-like [Cucurbita maxima] >XP_022982448.1 transmembrane protein 56-like [Cucurbita maxima])

HSP 1 Score: 296.2 bits (757), Expect = 6.6e-77
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L VSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT
Sbjct: 112 LGVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 171

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF
Sbjct: 172 TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 231

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 159
           GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ
Sbjct: 232 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 266

[Close]
BLAST of Carg24719 vs. NCBI nr
Match: XP_008466799.1 (PREDICTED: transmembrane protein 56-like [Cucumis melo] >XP_008466800.1 PREDICTED: transmembrane protein 56-like [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 1.1e-71
Identity = 141/155 (90.97%), Postives = 150/155 (96.77%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L VSVGYFITDL MI WFYP++GGMEYVIHHLLSL+AVAYAMLTGEGQLYT+MVLISETT
Sbjct: 109 LGVSVGYFITDLVMILWFYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETT 168

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TPGINLRWYLDTAGMKKSKAYLING+VIFFAWLVARILLFMY+FYHVYLHLNQVLQMH F
Sbjct: 169 TPGINLRWYLDTAGMKKSKAYLINGIVIFFAWLVARILLFMYLFYHVYLHLNQVLQMHVF 228

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 159
           GQLLVFVVPL+LS+MNL WF+KIFRGLKKTLAKRQ
Sbjct: 229 GQLLVFVVPLILSIMNLTWFSKIFRGLKKTLAKRQ 263

[Close]
BLAST of Carg24719 vs. NCBI nr
Match: XP_022935816.1 (transmembrane protein 56-like [Cucurbita moschata] >XP_022935817.1 transmembrane protein 56-like [Cucurbita moschata] >XP_022935818.1 transmembrane protein 56-like [Cucurbita moschata] >XP_022935819.1 transmembrane protein 56-like [Cucurbita moschata] >XP_022935820.1 transmembrane protein 56-like [Cucurbita moschata] >XP_022935821.1 transmembrane protein 56-like [Cucurbita moschata] >XP_022935822.1 transmembrane protein 56-like [Cucurbita moschata])

HSP 1 Score: 278.9 bits (712), Expect = 1.1e-71
Identity = 143/155 (92.26%), Postives = 148/155 (95.48%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L VS GYF TDLGMI WFYP+LGGMEYV+HHLLSL+AVAYAMLTGEGQLYT+MVLISETT
Sbjct: 112 LGVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETT 171

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVY HLNQVLQMHAF
Sbjct: 172 TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYFHLNQVLQMHAF 231

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 159
           GQLLVFVVPLVLSVMN MWFA IF+GLKKTLAKRQ
Sbjct: 232 GQLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 266

[Close]
BLAST of Carg24719 vs. NCBI nr
Match: XP_022976835.1 (transmembrane protein 56-like [Cucurbita maxima] >XP_022976836.1 transmembrane protein 56-like [Cucurbita maxima] >XP_022976837.1 transmembrane protein 56-like [Cucurbita maxima] >XP_022976838.1 transmembrane protein 56-like [Cucurbita maxima] >XP_022976839.1 transmembrane protein 56-like [Cucurbita maxima] >XP_022976840.1 transmembrane protein 56-like [Cucurbita maxima])

HSP 1 Score: 278.9 bits (712), Expect = 1.1e-71
Identity = 143/155 (92.26%), Postives = 148/155 (95.48%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L VS GYF TDLGMI WFYP+LGGMEYV+HHLLSL+AVAYAMLTGEGQLYT+MVLISETT
Sbjct: 112 LGVSAGYFFTDLGMILWFYPTLGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETT 171

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVY HLNQVLQMHAF
Sbjct: 172 TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYFHLNQVLQMHAF 231

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 159
           GQLLVFVVPLVLSVMN MWFA IF+GLKKTLAKRQ
Sbjct: 232 GQLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 266

[Close]
BLAST of Carg24719 vs. TAIR10
Match: AT4G19645.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 231.9 bits (590), Expect = 2.8e-61
Identity = 115/155 (74.19%), Postives = 132/155 (85.16%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L VSVGYF+ DLGMI W YPSLGG EY++HH LS  AVAY++ +GE QLYT+MVLISE T
Sbjct: 114 LGVSVGYFLADLGMIFWLYPSLGGSEYILHHCLSGTAVAYSLFSGEAQLYTYMVLISEVT 173

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TP INLRWYLD AG+K+SKAYL+NGV IFFAWL ARILLF+YMFYHVY H +QV++MH F
Sbjct: 174 TPEINLRWYLDIAGLKRSKAYLVNGVAIFFAWLTARILLFIYMFYHVYTHYDQVIEMHTF 233

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 159
           G LLVFVVP+ LSVMNL+WF KI +GLKKTL KRQ
Sbjct: 234 GYLLVFVVPISLSVMNLIWFGKIVKGLKKTLEKRQ 268

[Close]
BLAST of Carg24719 vs. TAIR10
Match: AT1G31300.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 231.1 bits (588), Expect = 4.7e-61
Identity = 115/154 (74.68%), Postives = 133/154 (86.36%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L +S+GYF+ DLGMI W YPSLGG+EY++HH LS VAVAY++ +GEGQLYT+MVLISE T
Sbjct: 122 LGISIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEIT 181

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TP INLRWYLDTAGMKKS AY++NGV IF AWLVARILLF+YMFYHVYLH NQV++MH F
Sbjct: 182 TPEINLRWYLDTAGMKKSLAYVVNGVFIFLAWLVARILLFIYMFYHVYLHYNQVMRMHIF 241

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKR 158
           G +LVF VP  L VMNL+WF KI RG+KKTLAKR
Sbjct: 242 GYVLVFGVPAALGVMNLIWFGKIVRGVKKTLAKR 275

[Close]
BLAST of Carg24719 vs. TAIR10
Match: AT4G10360.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 173.7 bits (439), Expect = 9.0e-44
Identity = 81/155 (52.26%), Postives = 116/155 (74.84%), Query Frame = 0 

Query: 2   TLLQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISE 61
           +++ +S+GYF+ DL MI W++P+LGG+EYV HH LS+ A+  ++ +G+ Q Y F+VL+SE
Sbjct: 103 SVMGISLGYFLADLAMIFWYFPTLGGIEYVFHHFLSMFAIILSVTSGQSQFYIFLVLLSE 162

Query: 62  TTTPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMH 121
            TTP +NLRWYLD +G K SKAY +NG+ +F  WLVAR+LLF++ F H+YLH +QV Q+ 
Sbjct: 163 ATTPFVNLRWYLDNSGQKGSKAYTLNGIALFLGWLVARVLLFIFFFVHMYLHFHQVKQVF 222

Query: 122 AFGQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAK 157
             G   +  +P  L+VMNL+WF KI +GL KTL+K
Sbjct: 223 PLGFYSLLTIPPALAVMNLLWFWKITKGLIKTLSK 257

[Close]
BLAST of Carg24719 vs. Swiss-Prot
Match: sp|Q6PGS5|TM56B_XENLA (Transmembrane protein 56-B OS=Xenopus laevis OX=8355 GN=tmem56-b PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.1e-10
Identity = 50/157 (31.85%), Postives = 82/157 (52.23%), Query Frame = 0 

Query: 6   VSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTF--MVLISETT 65
           V+ GY I+DL +I +++  +G   +V HHL +L A  Y +  GEG L  F    LI+E +
Sbjct: 94  VTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVL--GEGMLPYFGNFRLIAEFS 153

Query: 66  TPGINLRWYLDTAGMKK-SKAYLINGVVIFFAWLVARILLFMYMFYHVYLHL-NQVLQMH 125
           TP +N RW+ +  G  K S   ++NGV++  ++ + RI +    +  V+     +     
Sbjct: 154 TPFVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFIVRIAVIPIYYGRVFSTFGTEAFHRL 213

Query: 126 AFGQLLVFVVPLV-LSVMNLMWFAKIFRGLKKTLAKR 158
             G    +++  V L +MN+MW  KI +G  K L  R
Sbjct: 214 GLGAQCAWIISSVSLDIMNVMWMIKIAKGCYKVLYHR 248

[Close]
BLAST of Carg24719 vs. Swiss-Prot
Match: sp|Q8CGF5|TMM56_MOUSE (Transmembrane protein 56 OS=Mus musculus OX=10090 GN=Tmem56 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.8e-09
Identity = 44/150 (29.33%), Postives = 77/150 (51.33%), Query Frame = 0 

Query: 9   GYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETTTPGIN 68
           GY I+DL +I + +  +G   ++IHH   L A  + + TG         L++E ++P +N
Sbjct: 110 GYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLLAELSSPFVN 169

Query: 69  LRWYLDTAGMKK-SKAYLINGVVIFFAWLVARILLF--MYMFYHVYLHLNQVLQMHAFGQ 128
            RW+ +     K SKA +ING+++   + + RI+    MY F +        ++     Q
Sbjct: 170 QRWFFEALKYPKFSKANVINGILMTVVFFIVRIISIPPMYFFLYSVYGTEPYIRFGFVIQ 229

Query: 129 LLVFVVPLVLSVMNLMWFAKIFRGLKKTLA 156
            +  V  ++L VMN+MW  KI +G  K ++
Sbjct: 230 SVWIVTCVILDVMNIMWMIKITKGCIKVIS 259

[Close]
BLAST of Carg24719 vs. Swiss-Prot
Match: sp|Q6GLX2|TM56A_XENLA (Transmembrane protein 56-A OS=Xenopus laevis OX=8355 GN=tmem56-a PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-06
Identity = 40/152 (26.32%), Postives = 72/152 (47.37%), Query Frame = 0 

Query: 6   VSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETTTP 65
           ++ GY + DL +++ F+  +     V HHL    +  Y +  G    +    LISE +TP
Sbjct: 93  ITCGYLVQDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTP 152

Query: 66  GINLRWYLDTAGMKKSK-AYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQ--VLQMHA 125
            +N RW+ D  G  +S    L+NG+ +   + + RI +    +  V+        +++  
Sbjct: 153 FVNQRWFFDVIGKPRSSWPVLLNGLAMALVFFIVRIAVIPSYYSQVFATFGTEGYIRLGI 212

Query: 126 FGQLLVFVVPLVLSVMNLMWFAKIFRGLKKTL 155
             Q+   V  +VL ++N+ W  KI RG  K +
Sbjct: 213 GPQVAWIVSCVVLDILNVFWMYKIARGFYKVV 244

[Close]
BLAST of Carg24719 vs. Swiss-Prot
Match: sp|Q6P4N1|TMM56_XENTR (Transmembrane protein 56 OS=Xenopus tropicalis OX=8364 GN=tmem56 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.2e-06
Identity = 40/152 (26.32%), Postives = 72/152 (47.37%), Query Frame = 0 

Query: 6   VSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETTTP 65
           ++ GY + DL +++ F+  +     V HHL    +  Y +  G    +    LISE +TP
Sbjct: 94  ITCGYLVHDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTP 153

Query: 66  GINLRWYLDTAGMKKSK-AYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQ--VLQMHA 125
            +N RW+ D  G  +S    L+NG+ +   + + RI +    +  V+        +++  
Sbjct: 154 FVNQRWFFDVIGKPRSSWPVLLNGLAMALVFFIVRIAVIPSYYSQVFATFGTEGYIRLGI 213

Query: 126 FGQLLVFVVPLVLSVMNLMWFAKIFRGLKKTL 155
             Q+   V  +VL ++N+ W  KI RG  K +
Sbjct: 214 GPQVAWIVSCVVLDILNVFWMYKIARGFYKVV 245

[Close]
BLAST of Carg24719 vs. Swiss-Prot
Match: sp|Q5XIY2|TM56B_DANRE (Transmembrane protein 56-B OS=Danio rerio OX=7955 GN=tmem56b PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.6e-05
Identity = 36/152 (23.68%), Postives = 76/152 (50.00%), Query Frame = 0 

Query: 6   VSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETTTP 65
           ++ GY   DL +++  + ++G + +V HHL +L A  Y +  G    +    LISE +TP
Sbjct: 91  ITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPYFANFRLISELSTP 150

Query: 66  GINLRWYLDTAGMKKSKAYLI-NGVVIFFAWLVARILLFMYMFYHVY-LHLNQVLQMHAF 125
            +N RW+ +     ++   ++ NG+ +   + + RI +    +  V+ +  +   +    
Sbjct: 151 FVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMPPYWAKVFGIIYSPTFEKLGL 210

Query: 126 GQLLVFVVPLV-LSVMNLMWFAKIFRGLKKTL 155
              + +++  V L ++N++W  KI RG  K +
Sbjct: 211 AIQVAWIISCVCLDILNIIWMYKIARGCYKVI 242

[Close]
BLAST of Carg24719 vs. TrEMBL
Match: tr|A0A1S3CS93|A0A1S3CS93_CUCME (transmembrane protein 56-like OS=Cucumis melo OX=3656 GN=LOC103504121 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 7.2e-72
Identity = 141/155 (90.97%), Postives = 150/155 (96.77%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L VSVGYFITDL MI WFYP++GGMEYVIHHLLSL+AVAYAMLTGEGQLYT+MVLISETT
Sbjct: 109 LGVSVGYFITDLVMILWFYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETT 168

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TPGINLRWYLDTAGMKKSKAYLING+VIFFAWLVARILLFMY+FYHVYLHLNQVLQMH F
Sbjct: 169 TPGINLRWYLDTAGMKKSKAYLINGIVIFFAWLVARILLFMYLFYHVYLHLNQVLQMHVF 228

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 159
           GQLLVFVVPL+LS+MNL WF+KIFRGLKKTLAKRQ
Sbjct: 229 GQLLVFVVPLILSIMNLTWFSKIFRGLKKTLAKRQ 263

[Close]
BLAST of Carg24719 vs. TrEMBL
Match: tr|A0A061DKB0|A0A061DKB0_THECC (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_001939 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.5e-66
Identity = 134/155 (86.45%), Postives = 142/155 (91.61%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L VSVGYF+ DLGMI WFYPSLGGMEYVIHHLLS  AVAY+MLTGEGQLYTFMVLISETT
Sbjct: 113 LGVSVGYFLADLGMIIWFYPSLGGMEYVIHHLLSGAAVAYSMLTGEGQLYTFMVLISETT 172

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TPGINLRWYLDTAGMKKSKAYLINGVVIF AWLVARILLFMY+FYHVYLH +QV Q+H+ 
Sbjct: 173 TPGINLRWYLDTAGMKKSKAYLINGVVIFVAWLVARILLFMYIFYHVYLHYDQVKQLHSC 232

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 159
           G  L+FVVPLVL+VMNLMWF KI RGLKKTLAKRQ
Sbjct: 233 GLFLIFVVPLVLAVMNLMWFGKIIRGLKKTLAKRQ 267

[Close]
BLAST of Carg24719 vs. TrEMBL
Match: tr|A0A151QS41|A0A151QS41_CAJCA (Transmembrane protein 56-B OS=Cajanus cajan OX=3821 GN=KK1_046052 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 5.9e-66
Identity = 132/155 (85.16%), Postives = 143/155 (92.26%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L VSVGYFI DLGMI WF+PSLGG EYVIHHL SLVAVAY+ML+GEGQLYTFMVLISETT
Sbjct: 120 LGVSVGYFIADLGMILWFFPSLGGYEYVIHHLFSLVAVAYSMLSGEGQLYTFMVLISETT 179

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TPGINLRWYLD AGMKKSKAYLINGVVIF +WLVARILLF+YMFYHVYLH +QV QMH F
Sbjct: 180 TPGINLRWYLDVAGMKKSKAYLINGVVIFISWLVARILLFIYMFYHVYLHFDQVEQMHTF 239

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 159
           GQLLV +VPLVLSVMNL+WF+KI +GL+KTLAKRQ
Sbjct: 240 GQLLVIIVPLVLSVMNLVWFSKIIKGLRKTLAKRQ 274

[Close]
BLAST of Carg24719 vs. TrEMBL
Match: tr|I1M706|I1M706_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G031400 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.3e-65
Identity = 131/155 (84.52%), Postives = 144/155 (92.90%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L VSVGYFI DLGMI WF+PSLGG EYVIHHLLSLVAVA++ML+GEGQLYT+MVLISETT
Sbjct: 120 LGVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLSLVAVAFSMLSGEGQLYTYMVLISETT 179

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TPGINLRWYLD AGMKKSKAYLINGVVIF AWLVARILLF+YMFYHVYLH +Q+ QMHAF
Sbjct: 180 TPGINLRWYLDAAGMKKSKAYLINGVVIFIAWLVARILLFVYMFYHVYLHFDQIEQMHAF 239

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 159
           GQ+LV VVPL LSVMNL+WF+KI +GL+KTLAKRQ
Sbjct: 240 GQVLVIVVPLALSVMNLIWFSKIIKGLRKTLAKRQ 274

[Close]
BLAST of Carg24719 vs. TrEMBL
Match: tr|K7L9X3|K7L9X3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100805862 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.3e-65
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 0 

Query: 4   LQVSVGYFITDLGMISWFYPSLGGMEYVIHHLLSLVAVAYAMLTGEGQLYTFMVLISETT 63
           L VSVGYFI DLG I WF+P+LGG EYVIHHL SLVAVAYAMLTGEGQLYTFMVLISETT
Sbjct: 120 LGVSVGYFIADLGTILWFFPALGGYEYVIHHLFSLVAVAYAMLTGEGQLYTFMVLISETT 179

Query: 64  TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHAF 123
           TPGINLRWYLD AGMKKSKAYLINGVVIF +WLVARILLF+YMFYHVYLH ++V QMH F
Sbjct: 180 TPGINLRWYLDVAGMKKSKAYLINGVVIFISWLVARILLFIYMFYHVYLHFDEVEQMHTF 239

Query: 124 GQLLVFVVPLVLSVMNLMWFAKIFRGLKKTLAKRQ 159
           GQ+LV VVPLVLSVMNL+WFAKI +GL+KTLAKRQ
Sbjct: 240 GQILVIVVPLVLSVMNLVWFAKIIKGLRKTLAKRQ 274

The following BLAST results are available for this feature:
BLAST of Carg24719 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940088.16.6e-7799.35transmembrane protein 56-like [Cucurbita moschata] >XP_022940089.1 transmembrane... [more]
XP_022982442.16.6e-7799.35transmembrane protein 56-like [Cucurbita maxima] >XP_022982443.1 transmembrane p... [more]
XP_008466799.11.1e-7190.97PREDICTED: transmembrane protein 56-like [Cucumis melo] >XP_008466800.1 PREDICTE... [more]
XP_022935816.11.1e-7192.26transmembrane protein 56-like [Cucurbita moschata] >XP_022935817.1 transmembrane... [more]
XP_022976835.11.1e-7192.26transmembrane protein 56-like [Cucurbita maxima] >XP_022976836.1 transmembrane p... [more]
BLAST of Carg24719 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G19645.12.8e-6174.19TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein[more]
AT1G31300.14.7e-6174.68TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein[more]
AT4G10360.19.0e-4452.26TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein[more]
BLAST of Carg24719 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6PGS5|TM56B_XENLA8.1e-1031.85Transmembrane protein 56-B OS=Xenopus laevis OX=8355 GN=tmem56-b PE=2 SV=1[more]
sp|Q8CGF5|TMM56_MOUSE6.8e-0929.33Transmembrane protein 56 OS=Mus musculus OX=10090 GN=Tmem56 PE=2 SV=1[more]
sp|Q6GLX2|TM56A_XENLA3.2e-0626.32Transmembrane protein 56-A OS=Xenopus laevis OX=8355 GN=tmem56-a PE=2 SV=1[more]
sp|Q6P4N1|TMM56_XENTR4.2e-0626.32Transmembrane protein 56 OS=Xenopus tropicalis OX=8364 GN=tmem56 PE=2 SV=1[more]
sp|Q5XIY2|TM56B_DANRE4.6e-0523.68Transmembrane protein 56-B OS=Danio rerio OX=7955 GN=tmem56b PE=2 SV=1[more]
BLAST of Carg24719 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CS93|A0A1S3CS93_CUCME7.2e-7290.97transmembrane protein 56-like OS=Cucumis melo OX=3656 GN=LOC103504121 PE=4 SV=1[more]
tr|A0A061DKB0|A0A061DKB0_THECC3.5e-6686.45TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein isoform 1 OS=T... [more]
tr|A0A151QS41|A0A151QS41_CAJCA5.9e-6685.16Transmembrane protein 56-B OS=Cajanus cajan OX=3821 GN=KK1_046052 PE=4 SV=1[more]
tr|I1M706|I1M706_SOYBN1.3e-6584.52Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G031400 PE=4 SV=1[more]
tr|K7L9X3|K7L9X3_SOYBN1.3e-6585.16Uncharacterized protein OS=Glycine max OX=3847 GN=100805862 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24719-RACarg24719-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006634TRAM/LAG1/CLN8 homology domainSMARTSM00724lag1_27coord: 1..155
e-value: 4.0E-12
score: 56.3
IPR006634TRAM/LAG1/CLN8 homology domainPFAMPF03798TRAM_LAG1_CLN8coord: 3..148
e-value: 8.4E-24
score: 84.3
IPR006634TRAM/LAG1/CLN8 homology domainPROSITEPS50922TLCcoord: 1..155
score: 32.687
NoneNo IPR availablePANTHERPTHR13439:SF28SUBFAMILY NOT NAMEDcoord: 4..158
NoneNo IPR availablePANTHERPTHR13439CT120 PROTEINcoord: 4..158