Cp4.1LG05g12310 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g12310
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transmembrane protein, putative
Location	Cp4.1LG05 : 8569231 .. 8569566 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATTGCCACAGCTGAGACGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGTGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATTGTGATTCTCGGCACCGTAGCCGGGATTATCGGGAGGCTTTTCTCAGGTCGTCGTGTTGTTGGCGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTGGATGGCAAGGTTGACGACGTTCCACCGTCGAGGCCTCCACGGTCGGCCACGGTGGGAGGTGATGTTCCTGTGGCAATGCCAATTCTGCCGGAGATAAAAGAAGAACAAGGGCATTGA

mRNA sequence

ATGTCCATTGCCACAGCTGAGACGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGTGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATTGTGATTCTCGGCACCGTAGCCGGGATTATCGGGAGGCTTTTCTCAGGTCGTCGTGTTGTTGGCGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTGGATGGCAAGGTTGACGACGTTCCACCGTCGAGGCCTCCACGGTCGGCCACGGTGGGAGGTGATGTTCCTGTGGCAATGCCAATTCTGCCGGAGATAAAAGAAGAACAAGGGCATTGA

Coding sequence (CDS)

ATGTCCATTGCCACAGCTGAGACGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGTGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATTGTGATTCTCGGCACCGTAGCCGGGATTATCGGGAGGCTTTTCTCAGGTCGTCGTGTTGTTGGCGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTGGATGGCAAGGTTGACGACGTTCCACCGTCGAGGCCTCCACGGTCGGCCACGGTGGGAGGTGATGTTCCTGTGGCAATGCCAATTCTGCCGGAGATAAAAGAAGAACAAGGGCATTGA

Protein sequence

MSIATAETMPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCSSCLDGKVDDVPPSRPPRSATVGGDVPVAMPILPEIKEEQGH

Homology

[Close]

BLAST of Cp4.1LG05g12310 vs. TrEMBL
Match: U5GFK7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s15180g PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-19
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QAA +H G     GPVIAVL VI ILG +AG+IGRL SGRR++G GQYD EGWVE+KCS
Sbjct: 25  QQAAYTHTGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRILGHGQYDFEGWVERKCS 84

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPIL----PEIKEEQ 110
           SCLDG VD  PP+R         D+PVA P++     EIKEE+
Sbjct: 85  SCLDGHVDP-PPTR-------HADIPVAAPVVEEGPQEIKEEE 118

[Close]

BLAST of Cp4.1LG05g12310 vs. TrEMBL
Match: B9S776_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0774210 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-19
Identity = 59/100 (59.00%), Postives = 71/100 (71.00%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QA ++H G     GPVIAVL VI ILG +AG+IGRL SGRRV+G GQYD EGWVE+KCS
Sbjct: 19  QQAYTAHTGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRVMGHGQYDFEGWVERKCS 78

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPILPEIKEEQG 111
           SCLDG+VD  PP+RP        D+PVA P+     EE+G
Sbjct: 79  SCLDGRVDP-PPTRP-------ADIPVAEPV-----EEEG 104

[Close]

BLAST of Cp4.1LG05g12310 vs. TrEMBL
Match: A5BS04_VITVI (Peroxidase OS=Vitis vinifera GN=VITISV_035943 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-19
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 9   MPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKK 68
           + +QA ++H G     GPVIAVL VI ILG +AG+IGRL SGRR++G GQYDVEGWVE+K
Sbjct: 827 LTQQAYTAHSGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRIMGHGQYDVEGWVERK 886

Query: 69  CSSCLDGKVDDVPPSRPPRSAT---VGGDVPVA--MPILPEIK-EEQGH 112
           CSSC+DG+VD  PP RPP + T    G   P A       EIK EEQ H
Sbjct: 887 CSSCIDGRVD--PPPRPPPAPTSYSPGESAPPADSSETAQEIKQEEQSH 932

[Close]

BLAST of Cp4.1LG05g12310 vs. TrEMBL
Match: A0A067KPY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04879 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-18
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +Q  ++H G     GP IAVL VI ILG +AG++GRL SGRR++G GQYD EGWVE+KCS
Sbjct: 17  QQVYTAHTGHG-SVGPFIAVLAVITILGVLAGMVGRLCSGRRIMGHGQYDFEGWVERKCS 76

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPI----LPEIKEEQ 110
           SCLDG+VD  PP  PP       D+PVA P+      EIKEE+
Sbjct: 77  SCLDGRVD--PPPAPP------ADIPVAEPLEETGPQEIKEEE 110

[Close]

BLAST of Cp4.1LG05g12310 vs. TrEMBL
Match: B9HRW7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10950g PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QAA +   +    GPVIAVL VI ILG +AG+IGR  SGRRV+G GQYD+EGWVE+KCS
Sbjct: 5   QQAAYTTRTSHGSVGPVIAVLAVITILGVIAGMIGRFCSGRRVLGHGQYDLEGWVERKCS 64

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPIL----PEIKEEQ 110
           SCLDG V   PP+RP        D+PVA P++     E KEE+
Sbjct: 65  SCLDGHVGP-PPTRP-------ADIPVAFPVVKGRPQETKEEK 99

[Close]

BLAST of Cp4.1LG05g12310 vs. TAIR10
Match: AT2G26520.1 (AT2G26520.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 37/106 (34.91%), Postives = 56/106 (52.83%), Query Frame = 1


Query: 6   AETMPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWV 65
           A  + + ++S     +   GP IAV +V+ +L  +A +IGRL SG+ ++G G YD+E W 
Sbjct: 13  ATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYGDYDMERWA 72

Query: 66  EKKCSSCLDGKVDDVPPSRPPRSATVGGDVPVAMPILPEIKEEQGH 112
           E +C SC+DG +    P RP  S T     P+         E +GH
Sbjct: 73  ESRCGSCIDGHIH---PHRPSPSPTPPPRQPLHHTSSGVSAESEGH 115

[Close]

BLAST of Cp4.1LG05g12310 vs. TAIR10
Match: AT3G57500.1 (AT3G57500.1 unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 7.0e-11
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 10  PRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKC 69
           P Q   SH         ++ VL VI IL  +AG+  RL  GR +  GG +D+EGWVE+KC
Sbjct: 24  PSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHLSHGGDHDIEGWVERKC 83

Query: 70  SSCLDGKVDDV------PPSRPPRSA 90
            SC+D  +  V      PP  PP +A
Sbjct: 84  RSCIDAGIPAVSAAPSPPPPPPPATA 109

[Close]

BLAST of Cp4.1LG05g12310 vs. NCBI nr
Match: gi|1009115432|ref|XP_015874226.1| (PREDICTED: transcription factor RBF1-like [Ziziphus jujuba])

HSP 1 Score: 112.8 bits (281), Expect = 3.7e-22
Identity = 62/103 (60.19%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 9   MPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKK 68
           M +QA ++H G     GPVIAVL VI ILG +AG+IGRL SGR ++G GQYD E WVE+K
Sbjct: 15  MTQQAYTTHSGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRPIMGHGQYDFEAWVERK 74

Query: 69  CSSCLDGKVDDVPPSRPPRSATVGGDVPVAMP--ILPEIKEEQ 110
           CS+CLDG+VD  PP   P + T GG+VPVAMP  I  EIKEE+
Sbjct: 75  CSTCLDGRVDPPPPPPRPPANTSGGEVPVAMPVEIQQEIKEEE 116

[Close]

BLAST of Cp4.1LG05g12310 vs. NCBI nr
Match: gi|743914551|ref|XP_011001206.1| (PREDICTED: uncharacterized protein LOC105108559 [Populus euphratica])

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-19
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QAA +H G     GPVIAVL VI ILG +AG+IGRL SGRR++G GQYD EGWVE+KCS
Sbjct: 20  QQAAYTHNGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRILGHGQYDFEGWVERKCS 79

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPIL----PEIKEEQ 110
           SCLDG VD  PP+R         D+PVA P++    PEIKEE+
Sbjct: 80  SCLDGHVDP-PPAR-------HADIPVAAPVVEEVPPEIKEEE 113

[Close]

BLAST of Cp4.1LG05g12310 vs. NCBI nr
Match: gi|566166639|ref|XP_006384448.1| (hypothetical protein POPTR_0004s15180g [Populus trichocarpa])

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-19
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QAA +H G     GPVIAVL VI ILG +AG+IGRL SGRR++G GQYD EGWVE+KCS
Sbjct: 25  QQAAYTHTGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRILGHGQYDFEGWVERKCS 84

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPIL----PEIKEEQ 110
           SCLDG VD  PP+R         D+PVA P++     EIKEE+
Sbjct: 85  SCLDGHVDP-PPTR-------HADIPVAAPVVEEGPQEIKEEE 118

[Close]

BLAST of Cp4.1LG05g12310 vs. NCBI nr
Match: gi|255561671|ref|XP_002521845.1| (PREDICTED: uncharacterized protein LOC8283273 [Ricinus communis])

HSP 1 Score: 102.4 bits (254), Expect = 5.0e-19
Identity = 59/100 (59.00%), Postives = 71/100 (71.00%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QA ++H G     GPVIAVL VI ILG +AG+IGRL SGRRV+G GQYD EGWVE+KCS
Sbjct: 19  QQAYTAHTGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRVMGHGQYDFEGWVERKCS 78

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPILPEIKEEQG 111
           SCLDG+VD  PP+RP        D+PVA P+     EE+G
Sbjct: 79  SCLDGRVDP-PPTRP-------ADIPVAEPV-----EEEG 104

[Close]

BLAST of Cp4.1LG05g12310 vs. NCBI nr
Match: gi|147858321|emb|CAN81423.1| (hypothetical protein VITISV_035943 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 8.6e-19
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 9   MPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKK 68
           + +QA ++H G     GPVIAVL VI ILG +AG+IGRL SGRR++G GQYDVEGWVE+K
Sbjct: 827 LTQQAYTAHSGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRIMGHGQYDVEGWVERK 886

Query: 69  CSSCLDGKVDDVPPSRPPRSAT---VGGDVPVA--MPILPEIK-EEQGH 112
           CSSC+DG+VD  PP RPP + T    G   P A       EIK EEQ H
Sbjct: 887 CSSCIDGRVD--PPPRPPPAPTSYSPGESAPPADSSETAQEIKQEEQSH 932

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g12310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g12310 vs. TrEMBL


Match Name	E-value	Identity	Description
U5GFK7_POPTR	2.7e-19	58.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s15180g PE=4 SV=1	[more]
B9S776_RICCO	3.5e-19	59.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0774210 PE=4 SV=1	[more]
A5BS04_VITVI	6.0e-19	56.88	Peroxidase OS=Vitis vinifera GN=VITISV_035943 PE=3 SV=1	[more]
A0A067KPY1_JATCU	5.1e-18	55.34	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04879 PE=4 SV=1	[more]
B9HRW7_POPTR	1.5e-17	55.34	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10950g PE=4 SV=1	[more]

BLAST of Cp4.1LG05g12310 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G26520.1	1.4e-11	34.91	unknown protein	[more]
AT3G57500.1	7.0e-11	40.70	unknown protein	[more]

BLAST of Cp4.1LG05g12310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009115432\|ref\|XP_015874226.1\|	3.7e-22	60.19	PREDICTED: transcription factor RBF1-like [Ziziphus jujuba]	[more]
gi\|743914551\|ref\|XP_011001206.1\|	1.0e-19	59.22	PREDICTED: uncharacterized protein LOC105108559 [Populus euphratica]	[more]
gi\|566166639\|ref\|XP_006384448.1\|	3.9e-19	58.25	hypothetical protein POPTR_0004s15180g [Populus trichocarpa]	[more]
gi\|255561671\|ref\|XP_002521845.1\|	5.0e-19	59.00	PREDICTED: uncharacterized protein LOC8283273 [Ricinus communis]	[more]
gi\|147858321\|emb\|CAN81423.1\|	8.6e-19	56.88	hypothetical protein VITISV_035943 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0000922	spindle pole
molecular_function	GO:0003674	molecular_function
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g12310.1	Cp4.1LG05g12310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 25..109 score: 3.3
None	No IPR available	PANTHER	PTHR33429:SF5	SUBFAMILY NOT NAMED	coord: 25..109 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g12310	CmoCh19G006400	Cucurbita moschata (Rifu)	cmocpeB499
Cp4.1LG05g12310	Cla015992	Watermelon (97103) v1	cpewmB748
Cp4.1LG05g12310	ClCG02G005720	Watermelon (Charleston Gray)	cpewcgB662
Cp4.1LG05g12310	Carg22983	Silver-seed gourd	carcpeB1243

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG05g12310	Cp4.1LG15g05030	Cucurbita pepo (Zucchini)	cpecpeB274

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g12310	Cucumber (Gy14) v1	cgycpeB0155
Cp4.1LG05g12310	Cucurbita pepo (Zucchini)	cpecpeB097
Cp4.1LG05g12310	Cucurbita pepo (Zucchini)	cpecpeB309
Cp4.1LG05g12310	Cucurbita pepo (Zucchini)	cpecpeB506
Cp4.1LG05g12310	Cucumber (Gy14) v1	cgycpeB0247
Cp4.1LG05g12310	Cucurbita maxima (Rimu)	cmacpeB585
Cp4.1LG05g12310	Cucurbita maxima (Rimu)	cmacpeB646
Cp4.1LG05g12310	Cucurbita moschata (Rifu)	cmocpeB534
Cp4.1LG05g12310	Cucurbita moschata (Rifu)	cmocpeB595
Cp4.1LG05g12310	Wild cucumber (PI 183967)	cpecpiB706
Cp4.1LG05g12310	Cucumber (Chinese Long) v2	cpecuB704
Cp4.1LG05g12310	Bottle gourd (USVL1VR-Ls)	cpelsiB589
Cp4.1LG05g12310	Bottle gourd (USVL1VR-Ls)	cpelsiB605
Cp4.1LG05g12310	Watermelon (Charleston Gray)	cpewcgB626
Cp4.1LG05g12310	Watermelon (97103) v1	cpewmB685
Cp4.1LG05g12310	Melon (DHL92) v3.5.1	cpemeB671
Cp4.1LG05g12310	Cucumber (Gy14) v2	cgybcpeB240
Cp4.1LG05g12310	Melon (DHL92) v3.6.1	cpemedB801
Cp4.1LG05g12310	Silver-seed gourd	carcpeB0568
Cp4.1LG05g12310	Silver-seed gourd	carcpeB1114
Cp4.1LG05g12310	Cucumber (Chinese Long) v3	cpecucB0879
Cp4.1LG05g12310	Wax gourd	cpewgoB0932
Cp4.1LG05g12310	Wax gourd	cpewgoB0956
Cp4.1LG05g12310	Wax gourd	cpewgoB0958