Carg22983 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22983
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	type IV secretion system protein virB10-like
Location	Cucurbita_argyrosperma_scaffold_319 : 263700 .. 264035 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATTGCCACAGCTGAGATGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGGGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATGGTGATTCTCGGCACCGTAGCCGGGATGATCGGGAGGCTTTTCTCAGGTCGTCGTCTAGTTGGTGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTCGATGGCAAGGTTGACGACGTTCCACCGTCGGGGCCTCCACGGTCGGCCACGGCGGGAGGCGATGTTCCTATGGCAATGCCAATTCTTCCGGAGATAAAAGAAGAACAAGGGCATTGA

mRNA sequence

ATGTCCATTGCCACAGCTGAGATGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGGGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATGGTGATTCTCGGCACCGTAGCCGGGATGATCGGGAGGCTTTTCTCAGGTCGTCGTCTAGTTGGTGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTCGATGGCAAGGTTGACGACGTTCCACCGTCGGGGCCTCCACGGTCGGCCACGGCGGGAGGCGATGTTCCTATGGCAATGCCAATTCTTCCGGAGATAAAAGAAGAACAAGGGCATTGA

Coding sequence (CDS)

ATGTCCATTGCCACAGCTGAGATGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGGGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATGGTGATTCTCGGCACCGTAGCCGGGATGATCGGGAGGCTTTTCTCAGGTCGTCGTCTAGTTGGTGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTCGATGGCAAGGTTGACGACGTTCCACCGTCGGGGCCTCCACGGTCGGCCACGGCGGGAGGCGATGTTCCTATGGCAATGCCAATTCTTCCGGAGATAAAAGAAGAACAAGGGCATTGA

Protein sequence

MSIATAEMMPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKCSSCFDGKVDDVPPSGPPRSATAGGDVPMAMPILPEIKEEQGH

Homology

[Close]

BLAST of Carg22983 vs. NCBI nr
Match: XP_023533131.1 (uncharacterized protein LOC111795113 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200.3 bits (508), Expect = 3.5e-48
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MSIATAEMMPRQAASSHVGADGPFGPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYD 60
           MSIATAE MPRQAASSHVGAD PFGPVIAVL    ILGTVAG+IGRLFSGRR+VGGGQYD
Sbjct: 1   MSIATAETMPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYD 60

Query: 61  VEGWVEKKCSSCFDGKVDDVPPSGPPRSATAGGDVPMAMPILPEIKEEQGH 112
           VEGWVEKKCSSC DGKVDDVPPS PPRSAT GGDVP+AMPILPEIKEEQGH
Sbjct: 61  VEGWVEKKCSSCLDGKVDDVPPSRPPRSATVGGDVPVAMPILPEIKEEQGH 111

[Close]

BLAST of Carg22983 vs. NCBI nr
Match: PIN20459.1 (hypothetical protein CDL12_06867 [Handroanthus impetiginosus])

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 54/104 (51.92%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 11  RQAASSHVGADGPFGPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKCS 70
           +QA  +H G  G  GPVI VL    ILG +A MIGRL SGR + G GQYD E WVE KC+
Sbjct: 23  QQAYRTHTG-HGSVGPVIGVLAIITILGAIAVMIGRLCSGRGIRGYGQYDFESWVETKCA 82

Query: 71  SCFDGKVDDVPPSGPPR---SATAGGDVPMAMPILPEIKEEQGH 112
           SC DG+VD  PP  PPR       GG+ P A P  PE+++E+ H
Sbjct: 83  SCIDGRVD--PP--PPRVVVEHNVGGEAPRAAP--PEVRDEEAH 119

[Close]

BLAST of Carg22983 vs. NCBI nr
Match: KZM90571.1 (hypothetical protein DCAR_022064 [Daucus carota subsp. sativus])

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 6  AEMMPRQAASSHVGADGPFGPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYDVEGWV 65
          A  +P Q A +     G  GPVI VL    ILG +A M+GRL SGRR++G GQYD E WV
Sbjct: 14 APFLPTQQAYTSHSGHGSVGPVIGVLAIIIILGALAIMVGRLCSGRRIMGHGQYDFESWV 73

Query: 66 EKKCSSCFDGKVDDVP 82
          E KC++C DG+VD VP
Sbjct: 74 ETKCATCLDGRVDPVP 89

[Close]

BLAST of Carg22983 vs. NCBI nr
Match: XP_017256490.1 (PREDICTED: uncharacterized protein LOC108226047 [Daucus carota subsp. sativus])

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 6  AEMMPRQAASSHVGADGPFGPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYDVEGWV 65
          A  +P Q A +     G  GPVI VL    ILG +A M+GRL SGRR++G GQYD E WV
Sbjct: 14 APFLPTQQAYTSHSGHGSVGPVIGVLAIIIILGALAIMVGRLCSGRRIMGHGQYDFESWV 73

Query: 66 EKKCSSCFDGKVDDVP 82
          E KC++C DG+VD VP
Sbjct: 74 ETKCATCLDGRVDPVP 89

[Close]

BLAST of Carg22983 vs. NCBI nr
Match: KHN31053.1 (hypothetical protein glysoja_020351, partial [Glycine soja])

HSP 1 Score: 83.2 bits (204), Expect = 6.2e-13
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 25 GPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKCSSCFDGKVDDVPPSG 84
          GPVIAVL    +LG +AGMIGRL SGRR++G G+YDVE WVE KCSSC DG++    PSG
Sbjct: 2  GPVIAVLAVITVLGVIAGMIGRLCSGRRVMGHGEYDVETWVETKCSSCVDGRIAPPTPSG 61

[Close]

BLAST of Carg22983 vs. TAIR10
Match: AT2G26520.1 (unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-09
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 6  AEMMPRQAASSHVGADGPFGPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYDVEGWV 65
          A  + + ++S     +   GP IAV     +L  +A +IGRL SG+ ++G G YD+E W 
Sbjct: 13 ATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYGDYDMERWA 72

Query: 66 EKKCSSCFDGKV 78
          E +C SC DG +
Sbjct: 73 ESRCGSCIDGHI 84

[Close]

BLAST of Carg22983 vs. TAIR10
Match: AT3G57500.1 (unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-09
Identity = 29/71 (40.85%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 10 PRQAASSHVGADGPFGPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKC 69
          P Q   SH         ++ VL    IL  +AG+  RL  GR L  GG +D+EGWVE+KC
Sbjct: 24 PSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHLSHGGDHDIEGWVERKC 83

Query: 70 SSCFDGKVDDV 81
           SC D  +  V
Sbjct: 84 RSCIDAGIPAV 94

[Close]

BLAST of Carg22983 vs. TrEMBL
Match: tr|A0A2G9HSF1|A0A2G9HSF1_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06867 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.8e-16
Identity = 54/104 (51.92%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 11  RQAASSHVGADGPFGPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKCS 70
           +QA  +H G  G  GPVI VL    ILG +A MIGRL SGR + G GQYD E WVE KC+
Sbjct: 23  QQAYRTHTG-HGSVGPVIGVLAIITILGAIAVMIGRLCSGRGIRGYGQYDFESWVETKCA 82

Query: 71  SCFDGKVDDVPPSGPPR---SATAGGDVPMAMPILPEIKEEQGH 112
           SC DG+VD  PP  PPR       GG+ P A P  PE+++E+ H
Sbjct: 83  SCIDGRVD--PP--PPRVVVEHNVGGEAPRAAP--PEVRDEEAH 119

[Close]

BLAST of Carg22983 vs. TrEMBL
Match: tr|A0A164VMH3|A0A164VMH3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022064 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 6  AEMMPRQAASSHVGADGPFGPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYDVEGWV 65
          A  +P Q A +     G  GPVI VL    ILG +A M+GRL SGRR++G GQYD E WV
Sbjct: 14 APFLPTQQAYTSHSGHGSVGPVIGVLAIIIILGALAIMVGRLCSGRRIMGHGQYDFESWV 73

Query: 66 EKKCSSCFDGKVDDVP 82
          E KC++C DG+VD VP
Sbjct: 74 ETKCATCLDGRVDPVP 89

[Close]

BLAST of Carg22983 vs. TrEMBL
Match: tr|A0A151TBX7|A0A151TBX7_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_019147 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.3e-13
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 7  EMMPRQAASSHVGADGPFGPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYDVEGWVE 66
          E  P  + + H  A    GPVI VL    +LG +A MIGRL SGRR++G GQYDVE W E
Sbjct: 10 EQPPPVSVAQH-SAHESVGPVIGVLVVIIVLGVIAVMIGRLCSGRRIMGHGQYDVESWAE 69

Query: 67 KKCSSCFDGKVDDVPPSGPPRSATA 92
          +KCSSC DG+++   P+ P  S+T+
Sbjct: 70 RKCSSCIDGRINLSLPTRPSESSTS 93

[Close]

BLAST of Carg22983 vs. TrEMBL
Match: tr|A0A061FJB6|A0A061FJB6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033911 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.0e-13
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 12  QAASSHVGADGPFGPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKCSS 71
           Q  +SH       GPVIAV XXXX    +AGMIGRL +GR+++G GQYD+E W+E KCSS
Sbjct: 16  QPYNSHATTHASIGPVIAVXXXXXXXXILAGMIGRLCTGRKIMGYGQYDIESWIETKCSS 75

Query: 72  CFDGKVDDVPPSGPPRSATAGGDVPMAMPILPEIKEE 109
           C DG++   PP  PPR+  +G  VP ++   P+ +++
Sbjct: 76  CIDGRI--YPP--PPRANASGTSVPASIQHHPQQEDQ 108

[Close]

BLAST of Carg22983 vs. TrEMBL
Match: tr|A0A2R6RBY2|A0A2R6RBY2_ACTCH (Conglutinin like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07370 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-12
Identity = 40/67 (59.70%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 12 QAASSHVGADGPFGPVIAVLXXXXILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKCSS 71
          QA ++H G  G  GPVI VL    ILG +A MIGRL SGRR++G G Y+ EGWVE KC S
Sbjct: 17 QAYTTHSG-HGSIGPVIGVLAVITILGAIAVMIGRLCSGRRILGHGHYNFEGWVENKCGS 76

Query: 72 CFDGKVD 79
          C DG+VD
Sbjct: 77 CIDGRVD 82

The following BLAST results are available for this feature:

BLAST of Carg22983 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533131.1	3.5e-48	89.19	uncharacterized protein LOC111795113 [Cucurbita pepo subsp. pepo]	[more]
PIN20459.1	1.3e-15	51.92	hypothetical protein CDL12_06867 [Handroanthus impetiginosus]	[more]
KZM90571.1	2.8e-13	53.95	hypothetical protein DCAR_022064 [Daucus carota subsp. sativus]	[more]
XP_017256490.1	2.8e-13	53.95	PREDICTED: uncharacterized protein LOC108226047 [Daucus carota subsp. sativus]	[more]
KHN31053.1	6.2e-13	65.00	hypothetical protein glysoja_020351, partial [Glycine soja]	[more]

BLAST of Carg22983 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G26520.1	1.7e-09	37.50	unknown protein	[more]
AT3G57500.1	2.9e-09	40.85	unknown protein	[more]

BLAST of Carg22983 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22983 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G9HSF1\|A0A2G9HSF1_9LAMI	8.8e-16	51.92	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06867 P...	[more]
tr\|A0A164VMH3\|A0A164VMH3_DAUCA	1.8e-13	53.95	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022064 ...	[more]
tr\|A0A151TBX7\|A0A151TBX7_CAJCA	5.3e-13	49.41	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_019147 PE=4 SV=1	[more]
tr\|A0A061FJB6\|A0A061FJB6_THECC	7.0e-13	47.42	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033911 PE=4 SV=1	[more]
tr\|A0A2R6RBY2\|A0A2R6RBY2_ACTCH	2.6e-12	59.70	Conglutinin like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22983-RA	Carg22983-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..111
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 11..109
None	No IPR available	PANTHER	PTHR33429:SF5	SUBFAMILY NOT NAMED	coord: 11..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22983	Cla015992	Watermelon (97103) v1	carwmB0895
Carg22983	ClCG02G005720	Watermelon (Charleston Gray)	carwcgB0868
Carg22983	Cp4.1LG15g05030	Cucurbita pepo (Zucchini)	carcpeB1241
Carg22983	Cp4.1LG05g12310	Cucurbita pepo (Zucchini)	carcpeB1243
Carg22983	Cla97C02G032680	Watermelon (97103) v2	carwmbB0930
Carg22983	Bhi05G001011	Wax gourd	carwgoB1036

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22983	Watermelon (97103) v2	carwmbB0931
Carg22983	Wax gourd	carwgoB1037
Carg22983	Silver-seed gourd	carcarB619
Carg22983	Cucurbita maxima (Rimu)	carcmaB1232
Carg22983	Cucurbita maxima (Rimu)	carcmaB1233
Carg22983	Cucurbita moschata (Rifu)	carcmoB1204
Carg22983	Wild cucumber (PI 183967)	carcpiB0926
Carg22983	Bottle gourd (USVL1VR-Ls)	carlsiB808
Carg22983	Watermelon (Charleston Gray)	carwcgB0865