Cp4.1LG05g11920 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTTTAAGCAGGCATACGAGAAATGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAACACACAATTGCACATGCAATACAGACGGAATACAAAAAAACAAAGGTACTCAACCATTTCTAATTTTCTTTTCCCTGCATTAATAGTTCACTCGCCCTATTATCTCGGATTGAGGGGCCCTGAACCTGGAAAACACCAAAGAGATGAAATACCGCAGTGGAGGAAGCCAATGTGTTGCCCCCTCAACACACACCGGGTTGCTTGACTAAAACTGTTTCTTGTTCTAGTTCTGGATGATCCGTAGCTTGTCGATCGAGCGAAAAAATAAAATAAAATAAAATAAAATAATAAAAAAAAAAACGAAAAAAAAAAAGAAATTTTGTATAGGGTTCATTTGATAGAAACTTATGGTTTCTTTCTGTTTGTTAAGGTATATCTTTGGCCAGCATCAACTACGACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCTGGTTTTAAAAATATCAAATCTAAGGTAATTTATACCTGTCCTTTATTATGGAGGTTAATAGATTATGCTTTGCTCCTTCCCCACCTCTAACTTGAGTTCAAATAATAGGTTGTTGGCTCAAGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAGTAAGTAGCCATTGAGTTTACATGGTTAATATCTTCCAATCCCACATAAGATTTTTATACTTACATTTTTGTCCATTATATTTTTCAGATCGAGACTCCAAAGGATATTCAAGAAAAGTTCGGGCGGACTGTTGTCGAGAAGTATTTGCTATAATAGGAGGTTTTTTTTCCCATTCTTCTATCCCGTTTTGTTTTGGTTCGACTCTATTCTGTACTTTTGCTTCTAACTAAAAAGGCAATAATTTTCAGTTAGATGTACAAAAGGAAATATTTATGATAAGAAAACACTGTTGTATCTTCAGTTAAAGTTTTGATCATTTCCATTTTAGAACCCAGGCATGACATTGTACAACCTATAGAATAGAAGCTGTTCAAGTAAGGTTGCCATTTCCTTTACATCAATAATCAAGACAAACATCATTTTCAGCTCTTTTGATTTTTTACCTCTTTTTGCTTCTATGTTTGATGTTACCTTAACAGGCAAAGTGGATATGAATACACCCTTAGAAAATTTAGAAGAACCAATAAAAATAAATACCCTTCAAACCAATTGATATAGTTTGGTTCGGTTTAGTTCGGTTTAGTTTGGTTTCATCGATTTATTTCATTCTGGGTTAGTAATCTATCTTATATGAGGTCCATGATGTTGTGTAGGTGCAAATGTAGTACAATCAGTCCAAAGATCCATGTGTTAGACAATGATGCGTAAAGTGAAAAATGTATAGAGGAATTTGATCTTAGTGGCTGTCCATTTTCTTCTGAAAGTTCATTTATATGTTAACGTGGGAATAGAGTATTGATATAATCACTTAGCTTTAACTTTATGGTATTTGTGGGTTACACGAGTTTGGAATATATCAGACAGCTGTTTTGCACACTTCTTTTAACTTTGGAATGGAATTCATAGGGACTTTCTATGA ATGCTTTTAAGCAGGCATACGAGAAATGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAACACACAATTGCACATGCAATACAGACGGAATACAAAAAAACAAAGGTACTCAACCATTTCTAATTTTCTTTTCCCTGCATTAATAGTTCACTCGCCCTATTATCTCGGATTGAGGGGCCCTGAACCTGGAAAACACCAAAGAGATGAAATACCGCAGTGGAGGAAGCCAATGTGTTGCCCCCTCAACACACACCGGGTATATCTTTGGCCAGCATCAACTACGACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCTGGTTTTAAAAATATCAAATCTAAGGTTGTTGGCTCAAGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAATCGAGACTCCAAAGGATATTCAAGAAAAGTTCGGGCGGACTGTTGTCGAGAAGTATTTGCTATAATAGGAGGTGCAAATGTAGTACAATCAGTCCAAAGATCCATGTGTTAGACAATGATGCGTAAAGTGAAAAATGTATAGAGGAATTTGATCTTAGTGGCTGTCCATTTTCTTCTGAAAGTTCATTTATATGTTAACGTGGGAATAGAGTATTGATATAATCACTTAGCTTTAACTTTATGGTATTTGTGGGTTACACGAGTTTGGAATATATCAGACAGCTGTTTTGCACACTTCTTTTAACTTTGGAATGGAATTCATAGGGACTTTCTATGA ATGCTTTTAAGCAGGCATACGAGAAATGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAACACACAATTGCACATGCAATACAGACGGAATACAAAAAAACAAAGGTACTCAACCATTTCTAATTTTCTTTTCCCTGCATTAATAGTTCACTCGCCCTATTATCTCGGATTGAGGGGCCCTGAACCTGGAAAACACCAAAGAGATGAAATACCGCAGTGGAGGAAGCCAATGTGTTGCCCCCTCAACACACACCGGGTATATCTTTGGCCAGCATCAACTACGACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCTGGTTTTAAAAATATCAAATCTAAGGTTGTTGGCTCAAGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAATCGAGACTCCAAAGGATATTCAAGAAAAGTTCGGGCGGACTGTTGTCGAGAAGTATTTGCTATAA MLLSRHTRNVSKIFIMWNAMRNTQLHMQYRRNTKKQRYSTISNFLFPALIVHSPYYLGLRGPEPGKHQRDEIPQWRKPMCCPLNTHRVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRTVVEKYLL
BLAST of Cp4.1LG05g11920 vs. Swiss-Prot
Match: RS5_CHLP8 (30S ribosomal protein S5 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rpsE PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.2e-10 Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. Swiss-Prot
Match: RS5_PSEE4 (30S ribosomal protein S5 OS=Pseudomonas entomophila (strain L48) GN=rpsE PE=3 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 8.1e-10 Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. Swiss-Prot
Match: RS5_XANC5 (30S ribosomal protein S5 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rpsE PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.4e-09 Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. Swiss-Prot
Match: RS5_PSEF5 (30S ribosomal protein S5 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpsE PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.4e-09 Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. Swiss-Prot
Match: RS5_HAHCH (30S ribosomal protein S5 OS=Hahella chejuensis (strain KCTC 2396) GN=rpsE PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.4e-09 Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. TrEMBL
Match: A0A0A0LRA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431210 PE=4 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 5.8e-55 Identity = 117/161 (72.67%), Postives = 128/161 (79.50%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. TrEMBL
Match: F6H502_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02100 PE=3 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 9.0e-32 Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. TrEMBL
Match: A0A059DE89_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00913 PE=3 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.5e-31 Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. TrEMBL
Match: M5X2B8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004553mg PE=3 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 2.6e-31 Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. TrEMBL
Match: A0A061F6Z5_THECC (Ribosomal protein S5 family protein OS=Theobroma cacao GN=TCM_025634 PE=3 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 3.4e-31 Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. TAIR10
Match: AT1G64880.1 (AT1G64880.1 Ribosomal protein S5 family protein) HSP 1 Score: 127.5 bits (319), Expect = 7.5e-30 Identity = 59/75 (78.67%), Postives = 70/75 (93.33%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. NCBI nr
Match: gi|700208233|gb|KGN63352.1| (hypothetical protein Csa_2G431210 [Cucumis sativus]) HSP 1 Score: 221.9 bits (564), Expect = 8.3e-55 Identity = 117/161 (72.67%), Postives = 128/161 (79.50%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. NCBI nr
Match: gi|302143430|emb|CBI21991.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31 Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. NCBI nr
Match: gi|225446625|ref|XP_002276769.1| (PREDICTED: uncharacterized protein LOC100267778 [Vitis vinifera]) HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31 Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. NCBI nr
Match: gi|702240366|ref|XP_010044836.1| (PREDICTED: uncharacterized protein LOC104433693 [Eucalyptus grandis]) HSP 1 Score: 144.1 bits (362), Expect = 2.2e-31 Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1
BLAST of Cp4.1LG05g11920 vs. NCBI nr
Match: gi|1009123132|ref|XP_015878378.1| (PREDICTED: uncharacterized protein LOC107414724 [Ziziphus jujuba]) HSP 1 Score: 143.7 bits (361), Expect = 2.9e-31 Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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