CmaCh02G004780 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G004780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Structural constituent of ribosome
Location	Cma_Chr02 : 2518319 .. 2520357 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTGTGATCAAGCCTCTTCATCACAGTGGATTAGGCATTTGTTGGGGGGACATAAAAATTTTGCTTTGTTATCCAAATGGTCTTTGGCATTTTCCAGAATAGATTAACTATCCTCAGGTAAAAGGTAGTTATAAGTTGACCAAAATCTTACTTGTGAATGGATTAAAATCAACAAAATTGACCAAAATTAATTGGATCAATTTTTTTTCTGGTTTAAAATTGCATATTATATGAAGGCTTAATCTTTTGCTTGTAAGTTTCTTTTTTGAGTATTGTAATTTTTAGATATGAAAATTAATCCTTCAGAACGAGTATATTTCTAGTTAACAAATATGTTTTAAGAACCTTGGTGGTGTCCCAATGTGCATTGGACTTTATAGTTTTTCAGTTTACATTATTATTGTGTAGATTAATTTGATGCTTTTAAGCAGGCATATGAGAAATGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAACACACAATTGCACATGCAATACAGACGGAATACAAAAAAACAAAGGTACTCAACCATTTCTAATTTTCTTTTCCCTGCATTAATAGTTCACTCGCCCTATTATCTCGGATTGAGGGGTCCTGAACCTGGAAAACACCAAAGAGATGAAATACTGCGGTGGAGGAAGCCAATGTGTTGCCCCCTCAACACACACAGGGTTGCTTGACTAAAACTGTTTCTTGTTCTAGTTCTGGATGATCCATATCTTGTCGATCGAGCAAAAAAATAATAATAAAAAAATTAAAAAAAAATTAAAAAAAAAACAAAAAAAAGAAGAAATTTTGTATAGGGTTCATTTGATAGAAACTTATGGTTTCTTTCTGTTTGTTAAGGTATATCTTTGGCCAGCACCAACTACGACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCAGGTTTTAAAAATATCAAATCTAAGGTAATTTATACCTGTCCTTTATTATGGAGCTTAATAGATAATGCTTTGCTCCTGCACCACCTCTAACGTGAGTTCAAATAATAGGTTGTTGGCTCAAGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAGTAAGTAGCCATTGAGTTTACATAGCTAATAACTTCCAATCCCACATGAGATTTTTATACTTGCATTTTTTTGTCCATTATATTTTCCAGATCGAGACTCCAAAGGATATTCAAGAAAAGTTCGGGCGGACTGTTGTCGAGAAGTATTTGCTATAATAGGAGGTTTTTTTCCCATTCTTCTATCCCGTTTTGTTTTGGTTCGACTCTATTCTTGTACTTTTGCTTCTAACTAAAAAGGCAATAATTTTCAGTTAGATGTACAAAAGGAAATATTTATGATAAAAAAACACGGTTGTATCTTCTGTTAAAGTTTTAATCATTTCCATTTTAGAACTCAGGCATGACATTGTACAACCTATAGAATAGAAGCTGTTCAAGTAAGGTTGCCATTTCCTTTACATCAATAATCAAGACAAACATCATTTTCAGCTCTTTTGATTTTTTTACCTCTTTTTGCTTCTATGTTTGATGTTACCTTAACTGGCAAAGTGGATATGAATACACCCTTAGAAAATTTAGAAGAACCAATAAAAATAAATACCTTTCAAACTAATCGATATAGTTTGGTTCGGTTTAGTTCGGTTTCATCGATTTATTTCATTTTGGGTTAGTAATCTATCTTATATGAGGTCAATGATGTTGTGTAGGTGCAAATGTAGCACAATCAGTCCAAAGATCCATGTGTTTGACAATGATGCGTAAAGTGAGATATGTATAGAGGAATTTGATCTTAGTGGCTGTCCATTTTCTTCTGAAAGTTCATTTATATGTTAACGTGGGAATAGAGTATTGATATAATCACTTAGCTTTAACTTTATGGTATTTGTGGGTTACACGAGTTTGGAATATATCAGACAGCTGTTTTGCACACTTCTTTTGATTTTGGAATGGAATTCTTAGGGACTTTGTATGACTATTATGCTCATCTCTAAATCTGAC

mRNA sequence

ATGGCATATGAGAAATGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAACACACAATTGCACATGCAATACAGACGGAATACAAAAAAACAAAGGTATATCTTTGGCCAGCACCAACTACGACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCAGGTTTTAAAAATATCAAATCTAAGGTTGTTGGCTCAAGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAGTAAATCGAGACTCCAAAGGATATTCAAGAAAAGTTCGGGCGGACTGTTGTCGAGAAGTATTTGCTATAATAGGAGGTGCAAATGTAGCACAATCAGTCCAAAGATCCATGTGTTTGACAATGATGCGTAAAGTGAGATATGTATAGAGGAATTTGATCTTAGTGGCTGTCCATTTTCTTCTGAAAGTTCATTTATATGTTAACGTGGGAATAGAGTATTGATATAATCACTTAGCTTTAACTTTATGGTATTTGTGGGTTACACGAGTTTGGAATATATCAGACAGCTGTTTTGCACACTTCTTTTGATTTTGGAATGGAATTCTTAGGGACTTTGTATGACTATTATGCTCATCTCTAAATCTGAC

Coding sequence (CDS)

ATGGCATATGAGAAATGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAACACACAATTGCACATGCAATACAGACGGAATACAAAAAAACAAAGGTATATCTTTGGCCAGCACCAACTACGACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCAGGTTTTAAAAATATCAAATCTAAGGTTGTTGGCTCAAGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAGTAAATCGAGACTCCAAAGGATATTCAAGAAAAGTTCGGGCGGACTGTTGTCGAGAAGTATTTGCTATAATAGGAGGTGCAAATGTAGCACAATCAGTCCAAAGATCCATGTGTTTGACAATGATGCGTAAAGTGAGATATGTATAG

Protein sequence

MAYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAVNRDSKGYSRKVRADCCREVFAIIGGANVAQSVQRSMCLTMMRKVRYV

Homology

[Close]

BLAST of CmaCh02G004780 vs. Swiss-Prot
Match: RS5_ROSS1 (30S ribosomal protein S5 OS=Roseiflexus sp. (strain RS-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-10
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 1


Query: 20  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKA 79
           TI H +Q E+  +KV L PA   TG+ AG+ V+ VL +AG K++ SK  GS NP N +KA
Sbjct: 82  TIPHEVQMEFAASKVRLLPAAPGTGVIAGRGVRPVLEMAGIKDVLSKRYGSNNPINVVKA 141

Query: 80  LFKALNAV 88
            FKAL+A+
Sbjct: 142 TFKALSAL 149

[Close]

BLAST of CmaCh02G004780 vs. Swiss-Prot
Match: RS5_CHLAD (30S ribosomal protein S5 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpsE PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-09
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 20  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKA 79
           TI H I T++  TKV L PA   TG+ AG+ V+ V+  AG K++ SKV GS NP N +KA
Sbjct: 82  TIPHEIVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVYGSNNPVNVVKA 141

Query: 80  LFKALN 86
            FKAL+
Sbjct: 142 TFKALS 147

[Close]

BLAST of CmaCh02G004780 vs. Swiss-Prot
Match: RS5_CHLSY (30S ribosomal protein S5 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpsE PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.4e-09
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 20  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKA 79
           T+ H + T++  TKV L PA   TG+ AG+ V+ V+  AG K++ SKV GS NP N +KA
Sbjct: 82  TVPHEVVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVYGSNNPVNVVKA 141

Query: 80  LFKALNAVNRDSKGYSRK 98
            FKAL+ +    +  SR+
Sbjct: 142 TFKALSEMTSLHEMASRR 159

[Close]

BLAST of CmaCh02G004780 vs. Swiss-Prot
Match: RS5_CHLAA (30S ribosomal protein S5 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpsE PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.4e-09
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 20  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKA 79
           T+ H + T++  TKV L PA   TG+ AG+ V+ V+  AG K++ SKV GS NP N +KA
Sbjct: 82  TVPHEVVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVYGSNNPVNVVKA 141

Query: 80  LFKALNAVNRDSKGYSRK 98
            FKAL+ +    +  SR+
Sbjct: 142 TFKALSEMTSLHEMASRR 159

[Close]

BLAST of CmaCh02G004780 vs. Swiss-Prot
Match: RS5_ALTMD (30S ribosomal protein S5 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) GN=rpsE PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           A EK  +N+  V+ +  HT+ H I+  +  +KVY+ PA   TG+ AG  ++ VL +AG +
Sbjct: 63  AMEKARRNMVDVDLNG-HTLQHPIKGRHSGSKVYMQPASEGTGIIAGGAMRAVLEVAGVQ 122

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAVNRDSK 93
           N+ SK  GS NP N ++A   AL  +N  +K
Sbjct: 123 NVLSKCYGSTNPINVVRATINALTEMNSPAK 152

[Close]

BLAST of CmaCh02G004780 vs. TrEMBL
Match: V4VE22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031158mg PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-38
Identity = 78/86 (90.70%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           AYEKCFQNLHYVERHEEHTIAHAIQT YKKTKVYLWPAPT TGMKAG+TVQT+L+LAGFK
Sbjct: 440 AYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFK 499

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAV 88
           N+KSKVVGSRNPHNT+KALFKALNA+
Sbjct: 500 NVKSKVVGSRNPHNTVKALFKALNAI 525

[Close]

BLAST of CmaCh02G004780 vs. TrEMBL
Match: A0A061F6Z5_THECC (Ribosomal protein S5 family protein OS=Theobroma cacao GN=TCM_025634 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.4e-38
Identity = 76/86 (88.37%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           AYEKCFQNLHY+ERHEEHTIAHA+QT Y+KTKVYLWPAPTTTGMKAGKTV+ +LNLAGFK
Sbjct: 400 AYEKCFQNLHYIERHEEHTIAHAVQTAYRKTKVYLWPAPTTTGMKAGKTVEIILNLAGFK 459

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAV 88
           N+KSKVVGSRNPHNT+KALFKALNA+
Sbjct: 460 NVKSKVVGSRNPHNTVKALFKALNAI 485

[Close]

BLAST of CmaCh02G004780 vs. TrEMBL
Match: A0A059DE89_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00913 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 7.0e-38
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           AYEKCFQNLHYVERHEEHTIAHA+QT YKKTKVYLWPA T TGMKAG+TVQT+LNLAGFK
Sbjct: 402 AYEKCFQNLHYVERHEEHTIAHAVQTNYKKTKVYLWPASTRTGMKAGRTVQTILNLAGFK 461

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAV 88
           N+KSKV+GSRNPHNT+KALFKALNA+
Sbjct: 462 NVKSKVIGSRNPHNTVKALFKALNAI 487

[Close]

BLAST of CmaCh02G004780 vs. TrEMBL
Match: F6H502_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02100 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 9.1e-38
Identity = 76/86 (88.37%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           AYEKCFQNLHYVER+EEHTIAHA+QT YKKTKVYLWPA TTTGMKAG+TVQT+LNLAGFK
Sbjct: 394 AYEKCFQNLHYVERYEEHTIAHAVQTTYKKTKVYLWPAQTTTGMKAGRTVQTILNLAGFK 453

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAV 88
           N+KSKV+GSRNPHNT+KALFKALNA+
Sbjct: 454 NVKSKVIGSRNPHNTVKALFKALNAI 479

[Close]

BLAST of CmaCh02G004780 vs. TrEMBL
Match: A0A068U6M6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017459001 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-37
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           AYEKCFQNLHYVERHEEHTIAHA+QT YKKTKVYLWPA T TGMKAG+TVQT+LNLAG+K
Sbjct: 295 AYEKCFQNLHYVERHEEHTIAHAVQTSYKKTKVYLWPASTRTGMKAGRTVQTILNLAGYK 354

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAV 88
           N+KSKVVGSRNPHNT+KALFKALNA+
Sbjct: 355 NVKSKVVGSRNPHNTVKALFKALNAI 380

[Close]

BLAST of CmaCh02G004780 vs. TAIR10
Match: AT1G64880.1 (AT1G64880.1 Ribosomal protein S5 family protein)

HSP 1 Score: 154.5 bits (389), Expect = 4.8e-38
Identity = 73/86 (84.88%), Postives = 81/86 (94.19%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           AYEKCFQNLHYVERHEEHTIAHAIQT YKKTK+YLWPAPTTTGMKAG+ V+T+L LAGFK
Sbjct: 410 AYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFK 469

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAV 88
           NIKSKV+GSRN +NT+KA+ KALNAV
Sbjct: 470 NIKSKVIGSRNSYNTVKAVLKALNAV 495

[Close]

BLAST of CmaCh02G004780 vs. NCBI nr
Match: gi|567889757|ref|XP_006437399.1| (hypothetical protein CICLE_v10031158mg [Citrus clementina])

HSP 1 Score: 167.2 bits (422), Expect = 2.0e-38
Identity = 78/86 (90.70%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           AYEKCFQNLHYVERHEEHTIAHAIQT YKKTKVYLWPAPT TGMKAG+TVQT+L+LAGFK
Sbjct: 440 AYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFK 499

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAV 88
           N+KSKVVGSRNPHNT+KALFKALNA+
Sbjct: 500 NVKSKVVGSRNPHNTVKALFKALNAI 525

[Close]

BLAST of CmaCh02G004780 vs. NCBI nr
Match: gi|747061297|ref|XP_011077111.1| (PREDICTED: putative golgin subfamily A member 6-like protein 6 [Sesamum indicum])

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-38
Identity = 78/86 (90.70%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           AYEKCFQNLHY+ERHEEHTIAHAIQT YKKTKVYLWPAPT TGMKAG+TVQTVL+LAGFK
Sbjct: 416 AYEKCFQNLHYIERHEEHTIAHAIQTSYKKTKVYLWPAPTQTGMKAGRTVQTVLSLAGFK 475

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAV 88
           N+KSKVVGSRNPHNT+KALFKALNA+
Sbjct: 476 NVKSKVVGSRNPHNTVKALFKALNAI 501

[Close]

BLAST of CmaCh02G004780 vs. NCBI nr
Match: gi|590639741|ref|XP_007029757.1| (Ribosomal protein S5 family protein [Theobroma cacao])

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-38
Identity = 76/86 (88.37%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           AYEKCFQNLHY+ERHEEHTIAHA+QT Y+KTKVYLWPAPTTTGMKAGKTV+ +LNLAGFK
Sbjct: 400 AYEKCFQNLHYIERHEEHTIAHAVQTAYRKTKVYLWPAPTTTGMKAGKTVEIILNLAGFK 459

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAV 88
           N+KSKVVGSRNPHNT+KALFKALNA+
Sbjct: 460 NVKSKVVGSRNPHNTVKALFKALNAI 485

[Close]

BLAST of CmaCh02G004780 vs. NCBI nr
Match: gi|702240366|ref|XP_010044836.1| (PREDICTED: uncharacterized protein LOC104433693 [Eucalyptus grandis])

HSP 1 Score: 164.9 bits (416), Expect = 1.0e-37
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           AYEKCFQNLHYVERHEEHTIAHA+QT YKKTKVYLWPA T TGMKAG+TVQT+LNLAGFK
Sbjct: 402 AYEKCFQNLHYVERHEEHTIAHAVQTNYKKTKVYLWPASTRTGMKAGRTVQTILNLAGFK 461

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAV 88
           N+KSKV+GSRNPHNT+KALFKALNA+
Sbjct: 462 NVKSKVIGSRNPHNTVKALFKALNAI 487

[Close]

BLAST of CmaCh02G004780 vs. NCBI nr
Match: gi|302143430|emb|CBI21991.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-37
Identity = 76/86 (88.37%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 2   AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFK 61
           AYEKCFQNLHYVER+EEHTIAHA+QT YKKTKVYLWPA TTTGMKAG+TVQT+LNLAGFK
Sbjct: 299 AYEKCFQNLHYVERYEEHTIAHAVQTTYKKTKVYLWPAQTTTGMKAGRTVQTILNLAGFK 358

Query: 62  NIKSKVVGSRNPHNTLKALFKALNAV 88
           N+KSKV+GSRNPHNT+KALFKALNA+
Sbjct: 359 NVKSKVIGSRNPHNTVKALFKALNAI 384

The following BLAST results are available for this feature:

BLAST of CmaCh02G004780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS5_ROSS1	8.8e-10	50.00	30S ribosomal protein S5 OS=Roseiflexus sp. (strain RS-1) GN=rpsE PE=3 SV=1	[more]
RS5_CHLAD	3.4e-09	51.52	30S ribosomal protein S5 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=...	[more]
RS5_CHLSY	4.4e-09	43.59	30S ribosomal protein S5 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 63...	[more]
RS5_CHLAA	4.4e-09	43.59	30S ribosomal protein S5 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 63...	[more]
RS5_ALTMD	1.7e-08	38.46	30S ribosomal protein S5 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110...	[more]

BLAST of CmaCh02G004780 vs. TrEMBL


Match Name	E-value	Identity	Description
V4VE22_9ROSI	1.4e-38	90.70	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031158mg PE=3 SV=1	[more]
A0A061F6Z5_THECC	2.4e-38	88.37	Ribosomal protein S5 family protein OS=Theobroma cacao GN=TCM_025634 PE=3 SV=1	[more]
A0A059DE89_EUCGR	7.0e-38	88.37	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00913 PE=3 SV=1	[more]
F6H502_VITVI	9.1e-38	88.37	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02100 PE=3 SV=...	[more]
A0A068U6M6_COFCA	1.2e-37	88.37	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017459001 PE=3 SV=1	[more]

BLAST of CmaCh02G004780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64880.1	4.8e-38	84.88	Ribosomal protein S5 family protein	[more]

BLAST of CmaCh02G004780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567889757\|ref\|XP_006437399.1\|	2.0e-38	90.70	hypothetical protein CICLE_v10031158mg [Citrus clementina]	[more]
gi\|747061297\|ref\|XP_011077111.1\|	2.6e-38	90.70	PREDICTED: putative golgin subfamily A member 6-like protein 6 [Sesamum indicum]	[more]
gi\|590639741\|ref\|XP_007029757.1\|	3.4e-38	88.37	Ribosomal protein S5 family protein [Theobroma cacao]	[more]
gi\|702240366\|ref\|XP_010044836.1\|	1.0e-37	88.37	PREDICTED: uncharacterized protein LOC104433693 [Eucalyptus grandis]	[more]
gi\|302143430\|emb\|CBI21991.3\|	1.3e-37	88.37	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000851	Ribosomal_S5
IPR005324	Ribosomal_S5_C
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR020568	Ribosomal_S5_D2-typ_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005768	endosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005802	trans-Golgi network
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G004780.1	CmaCh02G004780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 2..87 score: 5.6
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 28..87 score: 1.1
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	G3DSA:3.30.230.10		coord: 15..86 score: 3.5
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 19..87 score: 1.77
None	No IPR available	PANTHER	PTHR13718:SF63	SUBFAMILY NOT NAMED	coord: 2..87 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G004780	Csa2G431210	Cucumber (Chinese Long) v2	cmacuB590
CmaCh02G004780	ClCG02G007800	Watermelon (Charleston Gray)	cmawcgB530
CmaCh02G004780	CSPI02G27350	Wild cucumber (PI 183967)	cmacpiB595
CmaCh02G004780	Lsi10G002170	Bottle gourd (USVL1VR-Ls)	cmalsiB548
CmaCh02G004780	Cp4.1LG16g01710	Cucurbita pepo (Zucchini)	cmacpeB626
CmaCh02G004780	Cp4.1LG05g11920	Cucurbita pepo (Zucchini)	cmacpeB646

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G004780	Cucumber (Gy14) v2	cgybcmaB231
CmaCh02G004780	Melon (DHL92) v3.6.1	cmamedB614
CmaCh02G004780	Melon (DHL92) v3.6.1	cmamedB616
CmaCh02G004780	Silver-seed gourd	carcmaB1309
CmaCh02G004780	Silver-seed gourd	carcmaB1460
CmaCh02G004780	Cucumber (Chinese Long) v3	cmacucB0703
CmaCh02G004780	Watermelon (97103) v2	cmawmbB617
CmaCh02G004780	Wax gourd	cmawgoB0759
CmaCh02G004780	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh02G004780	Cucumber (Gy14) v1	cgycmaB0735
CmaCh02G004780	Cucurbita moschata (Rifu)	cmacmoB606
CmaCh02G004780	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G004780	Melon (DHL92) v3.5.1	cmameB534
CmaCh02G004780	Watermelon (97103) v1	cmawmB595