Cp4.1LG05g11920 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g11920
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	30S ribosomal protein S5
Location	Cp4.1LG05 : 8241353 .. 8242950 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTTAAGCAGGCATACGAGAAATGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAACACACAATTGCACATGCAATACAGACGGAATACAAAAAAACAAAGGTACTCAACCATTTCTAATTTTCTTTTCCCTGCATTAATAGTTCACTCGCCCTATTATCTCGGATTGAGGGGCCCTGAACCTGGAAAACACCAAAGAGATGAAATACCGCAGTGGAGGAAGCCAATGTGTTGCCCCCTCAACACACACCGGGTTGCTTGACTAAAACTGTTTCTTGTTCTAGTTCTGGATGATCCGTAGCTTGTCGATCGAGCGAAAAAATAAAATAAAATAAAATAAAATAATAAAAAAAAAAACGAAAAAAAAAAAGAAATTTTGTATAGGGTTCATTTGATAGAAACTTATGGTTTCTTTCTGTTTGTTAAGGTATATCTTTGGCCAGCATCAACTACGACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCTGGTTTTAAAAATATCAAATCTAAGGTAATTTATACCTGTCCTTTATTATGGAGGTTAATAGATTATGCTTTGCTCCTTCCCCACCTCTAACTTGAGTTCAAATAATAGGTTGTTGGCTCAAGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAGTAAGTAGCCATTGAGTTTACATGGTTAATATCTTCCAATCCCACATAAGATTTTTATACTTACATTTTTGTCCATTATATTTTTCAGATCGAGACTCCAAAGGATATTCAAGAAAAGTTCGGGCGGACTGTTGTCGAGAAGTATTTGCTATAATAGGAGGTTTTTTTTCCCATTCTTCTATCCCGTTTTGTTTTGGTTCGACTCTATTCTGTACTTTTGCTTCTAACTAAAAAGGCAATAATTTTCAGTTAGATGTACAAAAGGAAATATTTATGATAAGAAAACACTGTTGTATCTTCAGTTAAAGTTTTGATCATTTCCATTTTAGAACCCAGGCATGACATTGTACAACCTATAGAATAGAAGCTGTTCAAGTAAGGTTGCCATTTCCTTTACATCAATAATCAAGACAAACATCATTTTCAGCTCTTTTGATTTTTTACCTCTTTTTGCTTCTATGTTTGATGTTACCTTAACAGGCAAAGTGGATATGAATACACCCTTAGAAAATTTAGAAGAACCAATAAAAATAAATACCCTTCAAACCAATTGATATAGTTTGGTTCGGTTTAGTTCGGTTTAGTTTGGTTTCATCGATTTATTTCATTCTGGGTTAGTAATCTATCTTATATGAGGTCCATGATGTTGTGTAGGTGCAAATGTAGTACAATCAGTCCAAAGATCCATGTGTTAGACAATGATGCGTAAAGTGAAAAATGTATAGAGGAATTTGATCTTAGTGGCTGTCCATTTTCTTCTGAAAGTTCATTTATATGTTAACGTGGGAATAGAGTATTGATATAATCACTTAGCTTTAACTTTATGGTATTTGTGGGTTACACGAGTTTGGAATATATCAGACAGCTGTTTTGCACACTTCTTTTAACTTTGGAATGGAATTCATAGGGACTTTCTATGA

mRNA sequence

ATGCTTTTAAGCAGGCATACGAGAAATGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAACACACAATTGCACATGCAATACAGACGGAATACAAAAAAACAAAGGTACTCAACCATTTCTAATTTTCTTTTCCCTGCATTAATAGTTCACTCGCCCTATTATCTCGGATTGAGGGGCCCTGAACCTGGAAAACACCAAAGAGATGAAATACCGCAGTGGAGGAAGCCAATGTGTTGCCCCCTCAACACACACCGGGTATATCTTTGGCCAGCATCAACTACGACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCTGGTTTTAAAAATATCAAATCTAAGGTTGTTGGCTCAAGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAATCGAGACTCCAAAGGATATTCAAGAAAAGTTCGGGCGGACTGTTGTCGAGAAGTATTTGCTATAATAGGAGGTGCAAATGTAGTACAATCAGTCCAAAGATCCATGTGTTAGACAATGATGCGTAAAGTGAAAAATGTATAGAGGAATTTGATCTTAGTGGCTGTCCATTTTCTTCTGAAAGTTCATTTATATGTTAACGTGGGAATAGAGTATTGATATAATCACTTAGCTTTAACTTTATGGTATTTGTGGGTTACACGAGTTTGGAATATATCAGACAGCTGTTTTGCACACTTCTTTTAACTTTGGAATGGAATTCATAGGGACTTTCTATGA

Coding sequence (CDS)

ATGCTTTTAAGCAGGCATACGAGAAATGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAACACACAATTGCACATGCAATACAGACGGAATACAAAAAAACAAAGGTACTCAACCATTTCTAATTTTCTTTTCCCTGCATTAATAGTTCACTCGCCCTATTATCTCGGATTGAGGGGCCCTGAACCTGGAAAACACCAAAGAGATGAAATACCGCAGTGGAGGAAGCCAATGTGTTGCCCCCTCAACACACACCGGGTATATCTTTGGCCAGCATCAACTACGACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCTGGTTTTAAAAATATCAAATCTAAGGTTGTTGGCTCAAGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAATCGAGACTCCAAAGGATATTCAAGAAAAGTTCGGGCGGACTGTTGTCGAGAAGTATTTGCTATAA

Protein sequence

MLLSRHTRNVSKIFIMWNAMRNTQLHMQYRRNTKKQRYSTISNFLFPALIVHSPYYLGLRGPEPGKHQRDEIPQWRKPMCCPLNTHRVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRTVVEKYLL

Homology

[Close]

BLAST of Cp4.1LG05g11920 vs. Swiss-Prot
Match: RS5_CHLP8 (30S ribosomal protein S5 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rpsE PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.2e-10
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 1


Query: 60  RGPEPGKHQRDEIPQWR----KPMCCPLNTHRVYLWPASTTTGMKAGKTVQTVLNLAGFK 119
           +G E GK    ++P  +     P+     + +V + PA+  TG+ AG  V+ VL +AG  
Sbjct: 67  KGVEDGKKNVIKVPIVKGTIPHPIVAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGIH 126

Query: 120 NIKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRTVVEKY 160
           +I +K +GS NPHN +KA  K L +I    D+ E+  +T+ E Y
Sbjct: 127 DILTKSLGSSNPHNVVKAAIKGLQSISDANDVAERRSKTLQEVY 170

[Close]

BLAST of Cp4.1LG05g11920 vs. Swiss-Prot
Match: RS5_PSEE4 (30S ribosomal protein S5 OS=Pseudomonas entomophila (strain L48) GN=rpsE PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.1e-10
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           +VY+ PAS  TG+ AG  ++ VL +AG +N+ +K  GS NP N + A FK L A+++P+ 
Sbjct: 94  KVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKAMQSPES 153

Query: 147 IQEKFGRTVVE 158
           I  K G+TV E
Sbjct: 154 IAAKRGKTVEE 164

[Close]

BLAST of Cp4.1LG05g11920 vs. Swiss-Prot
Match: RS5_XANC5 (30S ribosomal protein S5 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rpsE PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-09
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           RVY+ PAS  TG+ AG  ++ VL   G KN+ +K VGSRNP N ++A  K L+ +++P  
Sbjct: 106 RVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPAR 165

Query: 147 IQEKFGRTVVE 158
           +  K G+ V E
Sbjct: 166 VAAKRGKKVEE 176

[Close]

BLAST of Cp4.1LG05g11920 vs. Swiss-Prot
Match: RS5_PSEF5 (30S ribosomal protein S5 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpsE PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-09
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           +VY+ PAS  TG+ AG  ++ VL +AG +N+ +K  GS NP N + A FK L A+++P+ 
Sbjct: 94  KVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKAMQSPES 153

Query: 147 IQEKFGRTVVE 158
           I  K G++V E
Sbjct: 154 IAAKRGKSVQE 164

[Close]

BLAST of Cp4.1LG05g11920 vs. Swiss-Prot
Match: RS5_HAHCH (30S ribosomal protein S5 OS=Hahella chejuensis (strain KCTC 2396) GN=rpsE PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-09
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           +V++ PAS  TG+ AG  ++ VL +AG +N+ +K  GS NP N ++A F+ L A++ P++
Sbjct: 94  KVFMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVRATFEGLKAMQAPEE 153

Query: 147 IQEKFGRTVVE 158
           I  K G+TV E
Sbjct: 154 IAAKRGKTVEE 164

[Close]

BLAST of Cp4.1LG05g11920 vs. TrEMBL
Match: A0A0A0LRA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431210 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.8e-55
Identity = 117/161 (72.67%), Postives = 128/161 (79.50%), Query Frame = 1


Query: 1   MLLSRHTRNVSKIFIMWNAMRNTQLHMQYRRNTKKQRYSTISNFLFPALIVHSPYYLGLR 60
           MLLSRH RNVSKIFIMWN MR+TQLHMQ+RR+T+KQRYSTISN L  A  V S    GLR
Sbjct: 1   MLLSRHMRNVSKIFIMWNDMRSTQLHMQFRRHTRKQRYSTISNVLLSASKVPSTSNHGLR 60

Query: 61  GPEPGKHQRDEIPQWRKPMCCPLNTHRVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSK 120
           GP P          W+ P        ++YLWPASTTTGMKAGKTVQTVLNLAGFKN+KSK
Sbjct: 61  GPAPSSI-------WKTP------EEKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSK 120

Query: 121 VVGSRNPHNTLKALFKALNAIETPKDIQEKFGRTVVEKYLL 162
           V+GSRNP NT++ALFKALNAIETPKDIQEKFGRTVVEKYLL
Sbjct: 121 VIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTVVEKYLL 148

[Close]

BLAST of Cp4.1LG05g11920 vs. TrEMBL
Match: F6H502_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02100 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.0e-32
Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           +VYLWPA TTTGMKAG+TVQT+LNLAGFKN+KSKV+GSRNPHNT+KALFKALNAIETPKD
Sbjct: 425 KVYLWPAQTTTGMKAGRTVQTILNLAGFKNVKSKVIGSRNPHNTVKALFKALNAIETPKD 484

Query: 147 IQEKFGRTVVEKYLL 162
           +QEKFGRTVVEKYLL
Sbjct: 485 VQEKFGRTVVEKYLL 499

[Close]

BLAST of Cp4.1LG05g11920 vs. TrEMBL
Match: A0A059DE89_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00913 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-31
Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           +VYLWPAST TGMKAG+TVQT+LNLAGFKN+KSKV+GSRNPHNT+KALFKALNAIETPKD
Sbjct: 433 KVYLWPASTRTGMKAGRTVQTILNLAGFKNVKSKVIGSRNPHNTVKALFKALNAIETPKD 492

Query: 147 IQEKFGRTVVEKYLL 162
           +QEKFGRTVVEKYLL
Sbjct: 493 VQEKFGRTVVEKYLL 507

[Close]

BLAST of Cp4.1LG05g11920 vs. TrEMBL
Match: M5X2B8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004553mg PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.6e-31
Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           +VYLWPAST TGMKAG+TVQT+LNLAGFKN+KSKVVGSRNPHNT+KALFK+LNAIETPKD
Sbjct: 429 KVYLWPASTRTGMKAGRTVQTILNLAGFKNVKSKVVGSRNPHNTVKALFKSLNAIETPKD 488

Query: 147 IQEKFGRTVVEKYLL 162
           +QEKFGRTVVEKYLL
Sbjct: 489 VQEKFGRTVVEKYLL 503

[Close]

BLAST of Cp4.1LG05g11920 vs. TrEMBL
Match: A0A061F6Z5_THECC (Ribosomal protein S5 family protein OS=Theobroma cacao GN=TCM_025634 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-31
Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           +VYLWPA TTTGMKAGKTV+ +LNLAGFKN+KSKVVGSRNPHNT+KALFKALNAIETPKD
Sbjct: 431 KVYLWPAPTTTGMKAGKTVEIILNLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKD 490

Query: 147 IQEKFGRTVVEKYLL 162
           IQEKFGRTVVEKYLL
Sbjct: 491 IQEKFGRTVVEKYLL 505

[Close]

BLAST of Cp4.1LG05g11920 vs. TAIR10
Match: AT1G64880.1 (AT1G64880.1 Ribosomal protein S5 family protein)

HSP 1 Score: 127.5 bits (319), Expect = 7.5e-30
Identity = 59/75 (78.67%), Postives = 70/75 (93.33%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           ++YLWPA TTTGMKAG+ V+T+L LAGFKNIKSKV+GSRN +NT+KA+ KALNA+ETPKD
Sbjct: 441 KLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSKVIGSRNSYNTVKAVLKALNAVETPKD 500

Query: 147 IQEKFGRTVVEKYLL 162
           +QEKFGRTVVEKYLL
Sbjct: 501 VQEKFGRTVVEKYLL 515

[Close]

BLAST of Cp4.1LG05g11920 vs. NCBI nr
Match: gi|700208233|gb|KGN63352.1| (hypothetical protein Csa_2G431210 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 8.3e-55
Identity = 117/161 (72.67%), Postives = 128/161 (79.50%), Query Frame = 1


Query: 1   MLLSRHTRNVSKIFIMWNAMRNTQLHMQYRRNTKKQRYSTISNFLFPALIVHSPYYLGLR 60
           MLLSRH RNVSKIFIMWN MR+TQLHMQ+RR+T+KQRYSTISN L  A  V S    GLR
Sbjct: 1   MLLSRHMRNVSKIFIMWNDMRSTQLHMQFRRHTRKQRYSTISNVLLSASKVPSTSNHGLR 60

Query: 61  GPEPGKHQRDEIPQWRKPMCCPLNTHRVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSK 120
           GP P          W+ P        ++YLWPASTTTGMKAGKTVQTVLNLAGFKN+KSK
Sbjct: 61  GPAPSSI-------WKTP------EEKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSK 120

Query: 121 VVGSRNPHNTLKALFKALNAIETPKDIQEKFGRTVVEKYLL 162
           V+GSRNP NT++ALFKALNAIETPKDIQEKFGRTVVEKYLL
Sbjct: 121 VIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTVVEKYLL 148

[Close]

BLAST of Cp4.1LG05g11920 vs. NCBI nr
Match: gi|302143430|emb|CBI21991.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           +VYLWPA TTTGMKAG+TVQT+LNLAGFKN+KSKV+GSRNPHNT+KALFKALNAIETPKD
Sbjct: 330 KVYLWPAQTTTGMKAGRTVQTILNLAGFKNVKSKVIGSRNPHNTVKALFKALNAIETPKD 389

Query: 147 IQEKFGRTVVEKYLL 162
           +QEKFGRTVVEKYLL
Sbjct: 390 VQEKFGRTVVEKYLL 404

[Close]

BLAST of Cp4.1LG05g11920 vs. NCBI nr
Match: gi|225446625|ref|XP_002276769.1| (PREDICTED: uncharacterized protein LOC100267778 [Vitis vinifera])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           +VYLWPA TTTGMKAG+TVQT+LNLAGFKN+KSKV+GSRNPHNT+KALFKALNAIETPKD
Sbjct: 425 KVYLWPAQTTTGMKAGRTVQTILNLAGFKNVKSKVIGSRNPHNTVKALFKALNAIETPKD 484

Query: 147 IQEKFGRTVVEKYLL 162
           +QEKFGRTVVEKYLL
Sbjct: 485 VQEKFGRTVVEKYLL 499

[Close]

BLAST of Cp4.1LG05g11920 vs. NCBI nr
Match: gi|702240366|ref|XP_010044836.1| (PREDICTED: uncharacterized protein LOC104433693 [Eucalyptus grandis])

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-31
Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           +VYLWPAST TGMKAG+TVQT+LNLAGFKN+KSKV+GSRNPHNT+KALFKALNAIETPKD
Sbjct: 433 KVYLWPASTRTGMKAGRTVQTILNLAGFKNVKSKVIGSRNPHNTVKALFKALNAIETPKD 492

Query: 147 IQEKFGRTVVEKYLL 162
           +QEKFGRTVVEKYLL
Sbjct: 493 VQEKFGRTVVEKYLL 507

[Close]

BLAST of Cp4.1LG05g11920 vs. NCBI nr
Match: gi|1009123132|ref|XP_015878378.1| (PREDICTED: uncharacterized protein LOC107414724 [Ziziphus jujuba])

HSP 1 Score: 143.7 bits (361), Expect = 2.9e-31
Identity = 67/75 (89.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 87  RVYLWPASTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAIETPKD 146
           +VYLWPASTTTGMKAG+TVQT+LNLAGFKN+KSKVVGSRNPHNT+KA+FKALN IETPKD
Sbjct: 431 KVYLWPASTTTGMKAGRTVQTILNLAGFKNVKSKVVGSRNPHNTVKAVFKALNEIETPKD 490

Query: 147 IQEKFGRTVVEKYLL 162
           +QEKFGRTVVEKYLL
Sbjct: 491 VQEKFGRTVVEKYLL 505

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g11920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS5_CHLP8	6.2e-10	34.62	30S ribosomal protein S5 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rpsE PE=3...	[more]
RS5_PSEE4	8.1e-10	45.07	30S ribosomal protein S5 OS=Pseudomonas entomophila (strain L48) GN=rpsE PE=3 SV...	[more]
RS5_XANC5	2.4e-09	43.66	30S ribosomal protein S5 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10...	[more]
RS5_PSEF5	2.4e-09	43.66	30S ribosomal protein S5 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)...	[more]
RS5_HAHCH	2.4e-09	42.25	30S ribosomal protein S5 OS=Hahella chejuensis (strain KCTC 2396) GN=rpsE PE=3 S...	[more]

BLAST of Cp4.1LG05g11920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRA1_CUCSA	5.8e-55	72.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431210 PE=4 SV=1	[more]
F6H502_VITVI	9.0e-32	89.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02100 PE=3 SV=...	[more]
A0A059DE89_EUCGR	1.5e-31	89.33	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00913 PE=3 SV=1	[more]
M5X2B8_PRUPE	2.6e-31	89.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004553mg PE=3 SV=1	[more]
A0A061F6Z5_THECC	3.4e-31	90.67	Ribosomal protein S5 family protein OS=Theobroma cacao GN=TCM_025634 PE=3 SV=1	[more]

BLAST of Cp4.1LG05g11920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64880.1	7.5e-30	78.67	Ribosomal protein S5 family protein	[more]

BLAST of Cp4.1LG05g11920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208233\|gb\|KGN63352.1\|	8.3e-55	72.67	hypothetical protein Csa_2G431210 [Cucumis sativus]	[more]
gi\|302143430\|emb\|CBI21991.3\|	1.3e-31	89.33	unnamed protein product [Vitis vinifera]	[more]
gi\|225446625\|ref\|XP_002276769.1\|	1.3e-31	89.33	PREDICTED: uncharacterized protein LOC100267778 [Vitis vinifera]	[more]
gi\|702240366\|ref\|XP_010044836.1\|	2.2e-31	89.33	PREDICTED: uncharacterized protein LOC104433693 [Eucalyptus grandis]	[more]
gi\|1009123132\|ref\|XP_015878378.1\|	2.9e-31	89.33	PREDICTED: uncharacterized protein LOC107414724 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR020568	Ribosomal_S5_D2-typ_fold
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR005324	Ribosomal_S5_C
IPR000851	Ribosomal_S5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005768	endosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005802	trans-Golgi network
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g11920.1	Cp4.1LG05g11920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 87..157 score: 1.2
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 87..150 score: 6.9
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	G3DSA:3.30.230.10		coord: 86..152 score: 1.6
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 84..151 score: 7.33
None	No IPR available	PANTHER	PTHR13718:SF63	SUBFAMILY NOT NAMED	coord: 87..157 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g11920	Cucsa.017390	Cucumber (Gy14) v1	cgycpeB0690
Cp4.1LG05g11920	CmaCh20G009470	Cucurbita maxima (Rimu)	cmacpeB585
Cp4.1LG05g11920	CmaCh02G004780	Cucurbita maxima (Rimu)	cmacpeB646
Cp4.1LG05g11920	CmoCh20G009580	Cucurbita moschata (Rifu)	cmocpeB534
Cp4.1LG05g11920	CmoCh02G004820	Cucurbita moschata (Rifu)	cmocpeB595
Cp4.1LG05g11920	Csa2G431210	Cucumber (Chinese Long) v2	cpecuB706
Cp4.1LG05g11920	MELO3C024747	Melon (DHL92) v3.5.1	cpemeB672
Cp4.1LG05g11920	ClCG02G007800	Watermelon (Charleston Gray)	cpewcgB663
Cp4.1LG05g11920	CSPI02G27350	Wild cucumber (PI 183967)	cpecpiB708
Cp4.1LG05g11920	Lsi10G002170	Bottle gourd (USVL1VR-Ls)	cpelsiB589
Cp4.1LG05g11920	MELO3C024747.2	Melon (DHL92) v3.6.1	cpemedB806
Cp4.1LG05g11920	CsaV3_2G035950	Cucumber (Chinese Long) v3	cpecucB0881
Cp4.1LG05g11920	Bhi10G001232	Wax gourd	cpewgoB0950
Cp4.1LG05g11920	CsGy2G026810	Cucumber (Gy14) v2	cgybcpeB242
Cp4.1LG05g11920	Carg24028	Silver-seed gourd	carcpeB1469
Cp4.1LG05g11920	Carg25478	Silver-seed gourd	carcpeB1323

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG05g11920	Cp4.1LG16g01710	Cucurbita pepo (Zucchini)	cpecpeB309

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g11920	Cucurbita pepo (Zucchini)	cpecpeB097
Cp4.1LG05g11920	Watermelon (97103) v1	cpewmB728
Cp4.1LG05g11920	Silver-seed gourd	carcpeB0568