Lsi04G019760 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G019760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribosomal RNA small subunit methyltransferase G, putative
Location	chr04 : 26790250 .. 26791727 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATAATAATATATAGCTCCGACTTGATCAGCATCCTCCCATGTCTTGAAAGCCATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACCCAACAAGCTTTCATTCTCTTAACGTGCACGGCGGCCGCCATTGTCGGGCTCTGCGCGGCGGCATGGGCAAAGAAAAGGAAGGGGGAGAAGAAAGAGCACCGACAACGGACGACGGTGACAGAGAGGTGGTGGAAATGGACGGCGGAAAGGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGGGAAGGGGAAGGTGAAGAATTGGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATATTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGACTTATTCTGTACGACGAAAGGGGAAGATTGCTGCCGGATCAAATCGCCGCCATGGAAAATAGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGGATTTTTTTTAATAGAAAAAAAAATCAATTTTAACCCAGTACCTTAAATAGTATTAAATCACCCATTAACCAAAATTAAAGCAATGGACGAATATAAATTTAATATTATAATAACAATCTAACAAATTGTGTTGCACATTCTAATCGTTCCTTGAGAAAAACTTCTCATATGCATTCAATTGTTAAAAAACATATTTAGTCATAAGATTTTAAAGAAAATGCCATCATAAATTTTTTAATGGGGAATTTAAAAAAAATAAGAAAAATTATTCACATAGAATAACAAAATTTTTAGATAGTTGTAATAGACGCGGATAGAAGCCTATCACTAATAGATAGTGATAGAAGTTTGTTAATGTCTATCAATATTTTTTTATGTCTATCAATATTTTTTTTGTTATTTTATGTAAATAGTTTGACATTTTTTCTATCTAGAAAAATCTCCCTTTTTTAGTCGTTGAAAATTATTTTAATTTTATTTTAATTATAATAGTTTCAAAAGAAAGTAATCACGACCTGTTATTATTCAACTTATGTAATTAAATTAATTATCATTTAAAAAGAAATGATGTCACTAAACTGATAATATACTTTAGAACACATTTAAATATTTAAAATGATAAGTTTTTCTAATAGAAAATTTTAAAAACTTCATTTCTATGGCGTTTAGGAGTGTTCACGGTTCAATTCGGTTCGGTCGAAGCCCAAACGTTGGTGTTTGTGTGTTTAGCTGTTTGCATTGTAATTTTCTTTTTGGCCTTAACATTACATGTTTTGATTAATAAAATGTAGGAAGGAGAAGCCATAATAGTAAAGACAAGGTTGAAGGATCTACTCTGATGCTGTTCCTCTTCCATGGGAATCTTCAAAAAAGAGGTGTAAAAATTATACAAAGGGGTGAGCTTTTCCAATGTAATATCCCTTTCTTCTTTTGGTTAGATTCTCCAAATAAGCTTTCTTTCTCTCCATTTGTTACAAATTATCC

mRNA sequence

AATAATAATAATATATAGCTCCGACTTGATCAGCATCCTCCCATGTCTTGAAAGCCATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACCCAACAAGCTTTCATTCTCTTAACGTGCACGGCGGCCGCCATTGTCGGGCTCTGCGCGGCGGCATGGGCAAAGAAAAGGAAGGGGGAGAAGAAAGAGCACCGACAACGGACGACGGTGACAGAGAGGTGGTGGAAATGGACGGCGGAAAGGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGGGAAGGGGAAGGTGAAGAATTGGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATATTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGACTTATTCTGTACGACGAAAGGGGAAGATTGCTGCCGGATCAAATCGCCGCCATGGAAAATAGTTACAAGGAAGGAGAAGCCATAATAGTAAAGACAAGGTTGAAGGATCTACTCTGATGCTGTTCCTCTTCCATGGGAATCTTCAAAAAAGAGGTGTAAAAATTATACAAAGGGGTGAGCTTTTCCAATGTAATATCCCTTTCTTCTTTTGGTTAGATTCTCCAAATAAGCTTTCTTTCTCTCCATTTGTTACAAATTATCC

Coding sequence (CDS)

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACCCAACAAGCTTTCATTCTCTTAACGTGCACGGCGGCCGCCATTGTCGGGCTCTGCGCGGCGGCATGGGCAAAGAAAAGGAAGGGGGAGAAGAAAGAGCACCGACAACGGACGACGGTGACAGAGAGGTGGTGGAAATGGACGGCGGAAAGGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGGGAAGGGGAAGGTGAAGAATTGGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATATTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGACTTATTCTGTACGACGAAAGGGGAAGATTGCTGCCGGATCAAATCGCCGCCATGGAAAATAGTTACAAGGAAGGAGAAGCCATAATAGTAAAGACAAGGTTGAAGGATCTACTCTGA

Protein sequence

MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL

Homology

[Close]

BLAST of Lsi04G019760 vs. TrEMBL
Match: A0A0A0L376_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622860 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.1e-66
Identity = 132/155 (85.16%), Postives = 138/155 (89.03%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWK 60
           MEALWNLEDKWKLSTQQAF+LLTCT AA++GLCAAAWAKKRKGEKK H +RT   +RWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEKKAHPRRT--DQRWWK 60

Query: 61  W--TAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120
           W  T  RRK SGGGETPVRLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL
Sbjct: 61  WPATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120

Query: 121 YDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL 154
           YDERGRLL +QIAAMEN YKEGE I VKTRLKDLL
Sbjct: 121 YDERGRLLQEQIAAMENGYKEGEVIKVKTRLKDLL 153

[Close]

BLAST of Lsi04G019760 vs. TrEMBL
Match: A0A061FGE7_THECC (Ribosomal RNA small subunit methyltransferase G, putative OS=Theobroma cacao GN=TCM_032143 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.7e-25
Identity = 80/184 (43.48%), Postives = 105/184 (57.07%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAA-AWAKKRKGEKKEHRQRTTVTE--- 60
           MEALW+LE+KWKL+TQ+A +LL C A+A+VGLCAA    KKRK +KK+   R  V +   
Sbjct: 16  MEALWDLEEKWKLTTQEAVLLLACAASAVVGLCAATVLKKKRKAQKKQMVDRDRVADGAV 75

Query: 61  --RWWK----WTAERRKVSGGG----------------ETPVRLLGGEGEGEELG--SRN 120
             +W +    W + +R   G                  E P  LLG EG     G  S N
Sbjct: 76  HAKWCEPSCNWVSAKRVFMGSAMWSGANRWGERSFGWEERPPPLLGLEGYDSCAGWRSHN 135

Query: 121 STAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQI---AAMENSYKEGEAIIVKTRL 154
           S + VWQRPILMGEKCE+ ++SGLILYDERG+LL       +  E + +E     ++T L
Sbjct: 136 SDSPVWQRPILMGEKCELPRFSGLILYDERGQLLDHSAKGSSDQEETLQEETTGRIRTTL 195

[Close]

BLAST of Lsi04G019760 vs. TrEMBL
Match: B9N7S2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10460g PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-25
Identity = 80/188 (42.55%), Postives = 107/188 (56.91%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQR---TTVTER 60
           MEALWNLED+WKL+TQ+A +L  CTA A++ LCAA   K++   K+    +   T  ++R
Sbjct: 1   MEALWNLEDEWKLTTQEAVLLFVCTALAVIALCAAIMLKRKAQTKQRSVNQDPSTGSSKR 60

Query: 61  WWK-------WTAERRKV----------------SGGGE-----TPVRLLGGEGEGEELG 120
           W +       W   RR +                SG G       P  +LG E     +G
Sbjct: 61  WSEPEPGSNNWITIRRVLMESMRWSGASKWDEGSSGSGSGSGMLLPPPVLGLERCESSMG 120

Query: 121 --SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQIAA--MENSYKEGEAIIV 154
             S +S +AVWQRPILMGEKCE+ +YSGLILYDERGRLL   + +   EN ++E  A ++
Sbjct: 121 WQSPDSLSAVWQRPILMGEKCELPRYSGLILYDERGRLLDHSLTSSRKENIHEEKPAAVL 180

[Close]

BLAST of Lsi04G019760 vs. TrEMBL
Match: A0A0D2PI92_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G332200 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 78/182 (42.86%), Postives = 105/182 (57.69%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTE---- 60
           MEALW+LE+KWKL+TQ+A I+  C A+AIVGLCAA   KK K  KK+      V +    
Sbjct: 1   MEALWSLEEKWKLTTQEAVIVFVCAASAIVGLCAATVLKK-KARKKQVADGDAVGDGSMN 60

Query: 61  -RW------W----------KWTAERR---KVSGGGETPVRLLGGEGEGEELG--SRNST 120
            +W      W           W+  +R   +     E P  LLG E  G+ +G  S NS 
Sbjct: 61  AKWREPGCSWVPKKVLMGSVMWSGAKRWGERSFRWEERPPPLLGLEEYGDSVGWRSHNSD 120

Query: 121 AAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAI---IVKTRLKD 154
           + VWQRPILMGEKCE+ ++SGLILYDERG+LL D +  + +   + +     +V+T L+D
Sbjct: 121 SPVWQRPILMGEKCELPRFSGLILYDERGQLLDDSVKRLSDQANDNQGKSTGVVRTTLRD 180

[Close]

BLAST of Lsi04G019760 vs. TrEMBL
Match: V4TUY8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024060mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-22
Identity = 68/164 (41.46%), Postives = 94/164 (57.32%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKK--------EHRQRT 60
           MEALWNLEDKWKL+T+++ +L  C A A+VGLC     +++  + K              
Sbjct: 1   MEALWNLEDKWKLTTRESLLLFVCAAVAVVGLCTVTILQRKAQKTKVVDVDDGPSKSVHV 60

Query: 61  TVTERWWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLK 120
            + E    W + +R +       VR  GG G      S NS + VWQRPILMGEKCE+ +
Sbjct: 61  KLGEPSCGWVSIKRMLMSS----VRWTGGVG----WQSHNSASPVWQRPILMGEKCELPR 120

Query: 121 YSGLILYDERGRLLPDQIAA---MENSYKEGEAIIVKTRLKDLL 154
           +SGLILYDERG+ L   + A    ++ ++E  A +V+T LKDLL
Sbjct: 121 FSGLILYDERGKPLHHSLKAASYKDDIHQEKSAAVVRTTLKDLL 156

[Close]

BLAST of Lsi04G019760 vs. TAIR10
Match: AT3G14760.1 (AT3G14760.1 unknown protein)

HSP 1 Score: 87.8 bits (216), Expect = 6.3e-18
Identity = 63/172 (36.63%), Postives = 90/172 (52.33%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKE-----------HR 60
           MEALW LE+K KL+T++A ++L  TAAA+  LC AA    R    K+             
Sbjct: 1   MEALWKLEEKLKLTTKEAVVILVGTAAAVTLLCIAAAFLNRNSRGKQVADAEWASETAFG 60

Query: 61  QRTTVTERWWKWTAERRKVSGG--GETPVRLLGGEGEGE------ELGSRNSTAAVWQRP 120
            RT   +R  KW+  +R + G     +  + +  E   +      +  S N+   VWQRP
Sbjct: 61  SRTMEEKRKCKWSKVKRTLMGSFCWSSAAKWMEMETRRQPPLLAVKERSLNAVDPVWQRP 120

Query: 121 ILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL 154
           ILMGEKCE+ ++SGLILYDE G   P     ++   K+    +V+T L+DLL
Sbjct: 121 ILMGEKCELPRFSGLILYDECGH--PRHHPQLQEKVKQSS--VVRTTLRDLL 168

[Close]

BLAST of Lsi04G019760 vs. NCBI nr
Match: gi|700199869|gb|KGN55027.1| (hypothetical protein Csa_4G622860 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.5e-66
Identity = 132/155 (85.16%), Postives = 138/155 (89.03%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWK 60
           MEALWNLEDKWKLSTQQAF+LLTCT AA++GLCAAAWAKKRKGEKK H +RT   +RWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEKKAHPRRT--DQRWWK 60

Query: 61  W--TAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120
           W  T  RRK SGGGETPVRLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL
Sbjct: 61  WPATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120

Query: 121 YDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL 154
           YDERGRLL +QIAAMEN YKEGE I VKTRLKDLL
Sbjct: 121 YDERGRLLQEQIAAMENGYKEGEVIKVKTRLKDLL 153

[Close]

BLAST of Lsi04G019760 vs. NCBI nr
Match: gi|659131296|ref|XP_008465611.1| (PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo])

HSP 1 Score: 256.1 bits (653), Expect = 3.8e-65
Identity = 130/155 (83.87%), Postives = 136/155 (87.74%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWK 60
           MEALWNLEDKWKLSTQQAF+LLTCT AA++ LCAAAWA+KRKGEKK HR+RT   +RWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTLAAVIALCAAAWARKRKGEKKAHRRRT--DQRWWK 60

Query: 61  WTAERR--KVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120
           W AE R     GGGETPVRLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL
Sbjct: 61  WAAEIRWKGSGGGGETPVRLLGEEEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120

Query: 121 YDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL 154
           YDERGRLL DQIAAMEN YKEGE I VKTRLKDLL
Sbjct: 121 YDERGRLLQDQIAAMENGYKEGEGIKVKTRLKDLL 153

[Close]

BLAST of Lsi04G019760 vs. NCBI nr
Match: gi|778695623|ref|XP_011654026.1| (PREDICTED: uncharacterized protein LOC105435286 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 8.1e-60
Identity = 119/140 (85.00%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWK 60
           MEALWNLEDKWKLSTQQAF+LLTCT AA++GLCAAAWAKKRKGEKK H +RT   +RWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEKKAHPRRT--DQRWWK 60

Query: 61  W--TAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120
           W  T  RRK SGGGETPVRLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL
Sbjct: 61  WPATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120

Query: 121 YDERGRLLPDQIAAMENSYK 139
           YDERGRLL +QIAAMEN YK
Sbjct: 121 YDERGRLLQEQIAAMENGYK 138

[Close]

BLAST of Lsi04G019760 vs. NCBI nr
Match: gi|743925357|ref|XP_011006814.1| (PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica])

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 81/187 (43.32%), Postives = 105/187 (56.15%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTE---- 60
           MEALWNLED+WKL+TQ+A +L  CTA A++ LCAA   K++   K+    +   T+    
Sbjct: 1   MEALWNLEDEWKLTTQEAVLLFVCTALAVIALCAAIMLKRKAQTKQRAVNQDPSTDFSIR 60

Query: 61  ----------------------RWW---KWTAERRKVSGGGET-PVRLLGGEGEGEELG- 120
                                 RW    KW  ERR  SG G   P  +LG E     +G 
Sbjct: 61  RSEPEPGSNNWITIRRVLMESMRWSGASKWD-ERRSGSGSGMLLPPPVLGSERCESSMGW 120

Query: 121 -SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQIAA--MENSYKEGEAIIVK 154
            S  S +AVWQRPILMGEKCE+ +YSG+ILYDERGRLL   + +   EN ++E  A +++
Sbjct: 121 QSPESLSAVWQRPILMGEKCELPRYSGVILYDERGRLLDHSLTSSRKENIHEEKPAAVLR 180

[Close]

BLAST of Lsi04G019760 vs. NCBI nr
Match: gi|590611129|ref|XP_007022014.1| (Ribosomal RNA small subunit methyltransferase G, putative [Theobroma cacao])

HSP 1 Score: 123.2 bits (308), Expect = 3.8e-25
Identity = 80/184 (43.48%), Postives = 105/184 (57.07%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAA-AWAKKRKGEKKEHRQRTTVTE--- 60
           MEALW+LE+KWKL+TQ+A +LL C A+A+VGLCAA    KKRK +KK+   R  V +   
Sbjct: 16  MEALWDLEEKWKLTTQEAVLLLACAASAVVGLCAATVLKKKRKAQKKQMVDRDRVADGAV 75

Query: 61  --RWWK----WTAERRKVSGGG----------------ETPVRLLGGEGEGEELG--SRN 120
             +W +    W + +R   G                  E P  LLG EG     G  S N
Sbjct: 76  HAKWCEPSCNWVSAKRVFMGSAMWSGANRWGERSFGWEERPPPLLGLEGYDSCAGWRSHN 135

Query: 121 STAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQI---AAMENSYKEGEAIIVKTRL 154
           S + VWQRPILMGEKCE+ ++SGLILYDERG+LL       +  E + +E     ++T L
Sbjct: 136 SDSPVWQRPILMGEKCELPRFSGLILYDERGQLLDHSAKGSSDQEETLQEETTGRIRTTL 195

The following BLAST results are available for this feature:

BLAST of Lsi04G019760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G019760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L376_CUCSA	1.1e-66	85.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622860 PE=4 SV=1	[more]
A0A061FGE7_THECC	2.7e-25	43.48	Ribosomal RNA small subunit methyltransferase G, putative OS=Theobroma cacao GN=...	[more]
B9N7S2_POPTR	4.5e-25	42.55	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10460g PE=4 SV=1	[more]
A0A0D2PI92_GOSRA	1.0e-24	42.86	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G332200 PE=4 SV=1	[more]
V4TUY8_9ROSI	1.6e-22	41.46	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024060mg PE=4 SV=1	[more]

BLAST of Lsi04G019760 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G14760.1	6.3e-18	36.63	unknown protein	[more]

BLAST of Lsi04G019760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199869\|gb\|KGN55027.1\|	1.5e-66	85.16	hypothetical protein Csa_4G622860 [Cucumis sativus]	[more]
gi\|659131296\|ref\|XP_008465611.1\|	3.8e-65	83.87	PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo]	[more]
gi\|778695623\|ref\|XP_011654026.1\|	8.1e-60	85.00	PREDICTED: uncharacterized protein LOC105435286 [Cucumis sativus]	[more]
gi\|743925357\|ref\|XP_011006814.1\|	1.0e-25	43.32	PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica]	[more]
gi\|590611129\|ref\|XP_007022014.1\|	3.8e-25	43.48	Ribosomal RNA small subunit methyltransferase G, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G019760.1	Lsi04G019760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 1..126 score: 3.2
None	No IPR available	PANTHER	PTHR33237:SF9	GENOMIC DNA, CHROMOSOME 3, BAC CLONE: T21E2	coord: 1..126 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G019760	Csa4G622860	Cucumber (Chinese Long) v2	culsiB283
Lsi04G019760	CSPI04G22480	Wild cucumber (PI 183967)	cpilsiB283
Lsi04G019760	CmaCh09G006800	Cucurbita maxima (Rimu)	cmalsiB025
Lsi04G019760	CmoCh09G006600	Cucurbita moschata (Rifu)	cmolsiB013
Lsi04G019760	Cla023304	Watermelon (97103) v1	lsiwmB333
Lsi04G019760	ClCG11G017140	Watermelon (Charleston Gray)	lsiwcgB259
Lsi04G019760	Bhi09G002912	Wax gourd	lsiwgoB402
Lsi04G019760	Cp4.1LG06g05280	Cucurbita pepo (Zucchini)	cpelsiB639
Lsi04G019760	CsGy4G020990	Cucumber (Gy14) v2	cgyblsiB263
Lsi04G019760	Carg03082	Silver-seed gourd	carlsiB577
Lsi04G019760	CsaV3_4G032800	Cucumber (Chinese Long) v3	cuclsiB304

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G019760	Watermelon (97103) v2	lsiwmbB266
Lsi04G019760	Cucumber (Gy14) v1	cgylsiB047
Lsi04G019760	Cucurbita maxima (Rimu)	cmalsiB432
Lsi04G019760	Cucurbita moschata (Rifu)	cmolsiB421
Lsi04G019760	Cucurbita pepo (Zucchini)	cpelsiB456
Lsi04G019760	Wild cucumber (PI 183967)	cpilsiB290
Lsi04G019760	Cucumber (Chinese Long) v2	culsiB290
Lsi04G019760	Melon (DHL92) v3.5.1	lsimeB315
Lsi04G019760	Melon (DHL92) v3.6.1	lsimedB331
Lsi04G019760	Silver-seed gourd	carlsiB286