Lsi11G016380 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi11G016380
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPhy rapidly regulated 1, putative
Locationchr11 : 24713517 .. 24713894 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAACCTCAAATTCAAACTCTCAAACAAACAACCACTTCTCGCCAAAAAACCCTAATCCTCAACGCATTGCACAAATCCTCTCCTCATCGACGCCGGAGCCGGAGAAGAGTATCGACCACCCGCATTGCCGAGAAGATTCACCGAAACGACGCTGTTTACGCCTCCGAAGAAGCCGATGAGAAGGAAGCCATCGAACGCAAGATTCGCGCCTTGCAGAGCATCGTTCCAGGAGGGGAATCGCTTGGAGTCGACAAGCTGTTTGAACAGACGGCGGAGTATATAATGAATTTGCAGCATCAAGTTAAGGCCATGAGAGCACTCTCGAGCTTTTTCGAAAGCTTGGAGAAGGAGAAATCCAAGTGTGGAGGTTGA

mRNA sequence

ATGGACAAACCTCAAATTCAAACTCTCAAACAAACAACCACTTCTCGCCAAAAAACCCTAATCCTCAACGCATTGCACAAATCCTCTCCTCATCGACGCCGGAGCCGGAGAAGAGTATCGACCACCCGCATTGCCGAGAAGATTCACCGAAACGACGCTGTTTACGCCTCCGAAGAAGCCGATGAGAAGGAAGCCATCGAACGCAAGATTCGCGCCTTGCAGAGCATCGTTCCAGGAGGGGAATCGCTTGGAGTCGACAAGCTGTTTGAACAGACGGCGGAGTATATAATGAATTTGCAGCATCAAGTTAAGGCCATGAGAGCACTCTCGAGCTTTTTCGAAAGCTTGGAGAAGGAGAAATCCAAGTGTGGAGGTTGA

Coding sequence (CDS)

ATGGACAAACCTCAAATTCAAACTCTCAAACAAACAACCACTTCTCGCCAAAAAACCCTAATCCTCAACGCATTGCACAAATCCTCTCCTCATCGACGCCGGAGCCGGAGAAGAGTATCGACCACCCGCATTGCCGAGAAGATTCACCGAAACGACGCTGTTTACGCCTCCGAAGAAGCCGATGAGAAGGAAGCCATCGAACGCAAGATTCGCGCCTTGCAGAGCATCGTTCCAGGAGGGGAATCGCTTGGAGTCGACAAGCTGTTTGAACAGACGGCGGAGTATATAATGAATTTGCAGCATCAAGTTAAGGCCATGAGAGCACTCTCGAGCTTTTTCGAAAGCTTGGAGAAGGAGAAATCCAAGTGTGGAGGTTGA

Protein sequence

MDKPQIQTLKQTTTSRQKTLILNALHKSSPHRRRSRRRVSTTRIAEKIHRNDAVYASEEADEKEAIERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG
BLAST of Lsi11G016380 vs. Swiss-Prot
Match: PAR1_ARATH (Transcription factor PAR1 OS=Arabidopsis thaliana GN=PAR1 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-13
Identity = 40/99 (40.40%), Postives = 67/99 (67.68%), Query Frame = 1

Query: 27  KSSPHRRRSRRRVSTTRIAEKIHRNDAVYASEEADEKEAIERKIRALQSIVPGGESLGVD 86
           +++   RR++RR+S T  + +  R +A       +E++ ++ KI ALQ I+PGG +LGVD
Sbjct: 26  RAAGFERRTKRRLSETNASVREDREEA------EEEEDEVKEKIEALQRIIPGGAALGVD 85

Query: 87  KLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 126
            LFE+TA YI++LQ Q+K ++ L+SF + +++E  K GG
Sbjct: 86  ALFEETAGYILSLQCQIKTIKVLTSFLQRIDQEDMKFGG 118

BLAST of Lsi11G016380 vs. Swiss-Prot
Match: PAR2_ARATH (Transcription factor PAR2 OS=Arabidopsis thaliana GN=PAR2 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-12
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1

Query: 17  QKTLILNALHKSSPHRRRSRRRVSTT--------RIAEKIHRNDAVYASEEADEKEAIER 76
           +KTL  +   +SSP    S    S+T        R+++           +E +++E +E 
Sbjct: 2   EKTLATSHTKRSSPPSPSSAVNTSSTGFNRRTRQRLSDATASVSETDVEDEDEDEEGVEE 61

Query: 77  KIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 126
           KI ALQ+IVPGG  LGVD LFE+TA YI+ LQ Q+ A++ L++F E  EK+  K GG
Sbjct: 62  KIEALQTIVPGGTELGVDALFEETASYILALQCQINAIKVLTTFLERCEKKDMKFGG 118

BLAST of Lsi11G016380 vs. TrEMBL
Match: A0A0A0KGU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423410 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.0e-51
Identity = 112/125 (89.60%), Postives = 117/125 (93.60%), Query Frame = 1

Query: 1   MDKPQIQTLKQTTTSRQKTLILNALHKSSPHRRRSRRRVSTTRIAEKIHRNDAVYASEEA 60
           MDKPQ QTLK TTTSRQKTLILNALHKSS HRRRSRRRV T+RIA+KIHRN  V+ SEE 
Sbjct: 1   MDKPQFQTLKSTTTSRQKTLILNALHKSSLHRRRSRRRVPTSRIADKIHRNHPVFTSEEP 60

Query: 61  DEKEAIERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 120
           DEKEA+ERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK
Sbjct: 61  DEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 120

Query: 121 SKCGG 126
           S+CGG
Sbjct: 121 SECGG 125

BLAST of Lsi11G016380 vs. TrEMBL
Match: I1M6X1_SOYBN (BHLH transcription factor OS=Glycine max GN=Glyma14g03180.1 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-18
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 1

Query: 24  ALHKSSPHRRRSRRRVSTTRIAEKIHRNDAVYASEEADEKEAIERKIRALQSIVPGGESL 83
           +LH     RRR R+ V+     ++    +     +  D++E IERKI ALQ IVPGGESL
Sbjct: 38  SLHVFRRSRRRWRKEVAVKDAVQEEEDEEKEEGEDGGDDREEIERKIHALQRIVPGGESL 97

Query: 84  GVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 126
           GVDKLF++TA YI+ LQ+QVKA+RAL+ FFE LEKEK+K GG
Sbjct: 98  GVDKLFDETAGYILALQYQVKALRALTGFFEKLEKEKTKFGG 139

BLAST of Lsi11G016380 vs. TrEMBL
Match: W9RT05_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021396 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-18
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1

Query: 56  ASEEADEKEAIERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFES 115
           +S E DEKE +ERKI+ALQ +VPGGESLGV+KLFE+TA YIM LQ Q+KAM+AL+SFFES
Sbjct: 64  SSVEVDEKEEVERKIKALQRVVPGGESLGVEKLFEETASYIMALQCQLKAMKALASFFES 123

Query: 116 LEKEKSKCGG 126
           L+KEK   GG
Sbjct: 124 LDKEKRMFGG 133

BLAST of Lsi11G016380 vs. TrEMBL
Match: I1JJ47_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G286900 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-17
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1

Query: 26  HKSSPHRRRSRRRVSTTRIAEKIHRNDAVYASEEADEKEAIERKIRALQSIVPGGESLGV 85
           HKS    RRSRRR    R    +  ++ V   +E D++E IERKI ALQ IVPGGESLGV
Sbjct: 36  HKSLHVFRRSRRR---WRKEVAVKEDEDV---DEGDDREEIERKIHALQRIVPGGESLGV 95

Query: 86  DKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 126
           DKLF++TA YI+ LQ+QVKA+RAL+ FF+ LEKEK+K GG
Sbjct: 96  DKLFDETAGYILALQYQVKALRALTGFFDKLEKEKTKFGG 129

BLAST of Lsi11G016380 vs. TrEMBL
Match: C6SXX6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-17
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1

Query: 26  HKSSPHRRRSRRRVSTTRIAEKIHRNDAVYASEEADEKEAIERKIRALQSIVPGGESLGV 85
           HKS    RRSRRR    R    +  ++ V   +E D++E IERKI ALQ IVPGGESLGV
Sbjct: 34  HKSLHVFRRSRRR---WRKEVAVKEDEDV---DEGDDREEIERKIHALQRIVPGGESLGV 93

Query: 86  DKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 126
           DKLF++TA YI+ LQ+QVKA+RAL+ FF+ LEKEK+K GG
Sbjct: 94  DKLFDETAGYILALQYQVKALRALTGFFDKLEKEKTKFGG 127

BLAST of Lsi11G016380 vs. TAIR10
Match: AT2G42870.1 (AT2G42870.1 phy rapidly regulated 1)

HSP 1 Score: 75.1 bits (183), Expect = 3.4e-14
Identity = 40/99 (40.40%), Postives = 67/99 (67.68%), Query Frame = 1

Query: 27  KSSPHRRRSRRRVSTTRIAEKIHRNDAVYASEEADEKEAIERKIRALQSIVPGGESLGVD 86
           +++   RR++RR+S T  + +  R +A       +E++ ++ KI ALQ I+PGG +LGVD
Sbjct: 26  RAAGFERRTKRRLSETNASVREDREEA------EEEEDEVKEKIEALQRIIPGGAALGVD 85

Query: 87  KLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 126
            LFE+TA YI++LQ Q+K ++ L+SF + +++E  K GG
Sbjct: 86  ALFEETAGYILSLQCQIKTIKVLTSFLQRIDQEDMKFGG 118

BLAST of Lsi11G016380 vs. TAIR10
Match: AT3G58850.1 (AT3G58850.1 phy rapidly regulated 2)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1

Query: 17  QKTLILNALHKSSPHRRRSRRRVSTT--------RIAEKIHRNDAVYASEEADEKEAIER 76
           +KTL  +   +SSP    S    S+T        R+++           +E +++E +E 
Sbjct: 2   EKTLATSHTKRSSPPSPSSAVNTSSTGFNRRTRQRLSDATASVSETDVEDEDEDEEGVEE 61

Query: 77  KIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 126
           KI ALQ+IVPGG  LGVD LFE+TA YI+ LQ Q+ A++ L++F E  EK+  K GG
Sbjct: 62  KIEALQTIVPGGTELGVDALFEETASYILALQCQINAIKVLTTFLERCEKKDMKFGG 118

BLAST of Lsi11G016380 vs. NCBI nr
Match: gi|449444983|ref|XP_004140253.1| (PREDICTED: transcription factor PAR2-like [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-51
Identity = 112/125 (89.60%), Postives = 117/125 (93.60%), Query Frame = 1

Query: 1   MDKPQIQTLKQTTTSRQKTLILNALHKSSPHRRRSRRRVSTTRIAEKIHRNDAVYASEEA 60
           MDKPQ QTLK TTTSRQKTLILNALHKSS HRRRSRRRV T+RIA+KIHRN  V+ SEE 
Sbjct: 1   MDKPQFQTLKSTTTSRQKTLILNALHKSSLHRRRSRRRVPTSRIADKIHRNHPVFTSEEP 60

Query: 61  DEKEAIERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 120
           DEKEA+ERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK
Sbjct: 61  DEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 120

Query: 121 SKCGG 126
           S+CGG
Sbjct: 121 SECGG 125

BLAST of Lsi11G016380 vs. NCBI nr
Match: gi|659097277|ref|XP_008449537.1| (PREDICTED: transcription factor PAR2-like [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 4.8e-50
Identity = 112/126 (88.89%), Postives = 117/126 (92.86%), Query Frame = 1

Query: 1   MDKPQIQTLKQTTTSRQKTLILNALHKSSPHRRRSRRRVSTTRI-AEKIHRNDAVYASEE 60
           MDKPQ QTLK TTTSRQKTLILNALHKSS HRRRSRRRV T+RI A+KIHRN  V+  EE
Sbjct: 1   MDKPQFQTLKSTTTSRQKTLILNALHKSSLHRRRSRRRVPTSRIIADKIHRNHPVFTYEE 60

Query: 61  ADEKEAIERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKE 120
           ADEKEA+ERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKE
Sbjct: 61  ADEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKE 120

Query: 121 KSKCGG 126
           KS+CGG
Sbjct: 121 KSECGG 126

BLAST of Lsi11G016380 vs. NCBI nr
Match: gi|1009126581|ref|XP_015880233.1| (PREDICTED: transcription factor PAR1 [Ziziphus jujuba])

HSP 1 Score: 102.1 bits (253), Expect = 7.4e-19
Identity = 62/121 (51.24%), Postives = 76/121 (62.81%), Query Frame = 1

Query: 5   QIQTLKQTTTSRQKTLILNALHKSSPHRRRSRRRVSTTRIAEKIHRNDAVYASEEADEKE 64
           QI  L    + ++KT   N L +S  HR+  R +       +K + N      +E DEKE
Sbjct: 9   QIVPLPAVPSKQRKTHSKNTLRRSDSHRKSRRNKQREAMKVKKHNGNGDDEKEQEEDEKE 68

Query: 65  AIERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCG 124
            +ERKI ALQ IVPGGESLGVDKLFE+TA YI+ LQ Q+KAMRAL+  FE  EKEK K G
Sbjct: 69  EVERKIEALQRIVPGGESLGVDKLFEETAGYIIALQCQLKAMRALTCLFEGFEKEKRKFG 128

Query: 125 G 126
           G
Sbjct: 129 G 129

BLAST of Lsi11G016380 vs. NCBI nr
Match: gi|571506777|ref|XP_006595753.1| (PREDICTED: transcription factor PAR1-like [Glycine max])

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-18
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 1

Query: 24  ALHKSSPHRRRSRRRVSTTRIAEKIHRNDAVYASEEADEKEAIERKIRALQSIVPGGESL 83
           +LH     RRR R+ V+     ++    +     +  D++E IERKI ALQ IVPGGESL
Sbjct: 38  SLHVFRRSRRRWRKEVAVKDAVQEEEDEEKEEGEDGGDDREEIERKIHALQRIVPGGESL 97

Query: 84  GVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 126
           GVDKLF++TA YI+ LQ+QVKA+RAL+ FFE LEKEK+K GG
Sbjct: 98  GVDKLFDETAGYILALQYQVKALRALTGFFEKLEKEKTKFGG 139

BLAST of Lsi11G016380 vs. NCBI nr
Match: gi|703120720|ref|XP_010102162.1| (hypothetical protein L484_021396 [Morus notabilis])

HSP 1 Score: 98.6 bits (244), Expect = 8.2e-18
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1

Query: 56  ASEEADEKEAIERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFES 115
           +S E DEKE +ERKI+ALQ +VPGGESLGV+KLFE+TA YIM LQ Q+KAM+AL+SFFES
Sbjct: 64  SSVEVDEKEEVERKIKALQRVVPGGESLGVEKLFEETASYIMALQCQLKAMKALASFFES 123

Query: 116 LEKEKSKCGG 126
           L+KEK   GG
Sbjct: 124 LDKEKRMFGG 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PAR1_ARATH6.1e-1340.40Transcription factor PAR1 OS=Arabidopsis thaliana GN=PAR1 PE=1 SV=1[more]
PAR2_ARATH1.8e-1239.32Transcription factor PAR2 OS=Arabidopsis thaliana GN=PAR2 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KGU6_CUCSA1.0e-5189.60Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423410 PE=4 SV=1[more]
I1M6X1_SOYBN3.4e-1853.92BHLH transcription factor OS=Glycine max GN=Glyma14g03180.1 PE=2 SV=1[more]
W9RT05_9ROSA5.7e-1871.43Uncharacterized protein OS=Morus notabilis GN=L484_021396 PE=4 SV=1[more]
I1JJ47_SOYBN1.7e-1759.00Uncharacterized protein OS=Glycine max GN=GLYMA_02G286900 PE=4 SV=1[more]
C6SXX6_SOYBN1.7e-1759.00Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G42870.13.4e-1440.40 phy rapidly regulated 1[more]
AT3G58850.11.0e-1339.32 phy rapidly regulated 2[more]
Match NameE-valueIdentityDescription
gi|449444983|ref|XP_004140253.1|1.5e-5189.60PREDICTED: transcription factor PAR2-like [Cucumis sativus][more]
gi|659097277|ref|XP_008449537.1|4.8e-5088.89PREDICTED: transcription factor PAR2-like [Cucumis melo][more]
gi|1009126581|ref|XP_015880233.1|7.4e-1951.24PREDICTED: transcription factor PAR1 [Ziziphus jujuba][more]
gi|571506777|ref|XP_006595753.1|4.8e-1853.92PREDICTED: transcription factor PAR1-like [Glycine max][more]
gi|703120720|ref|XP_010102162.1|8.2e-1871.43hypothetical protein L484_021396 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G016380.1Lsi11G016380.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 65..108
score: 3.
NoneNo IPR availableunknownCoilCoilcoord: 56..76
scor
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 32..125
score: 2.4
NoneNo IPR availablePANTHERPTHR33124:SF3EXPRESSED PROTEINcoord: 32..125
score: 2.4

The following gene(s) are paralogous to this gene:

None