Cp4.1LG15g08570 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG15g08570
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPhy rapidly regulated 1, putative
LocationCp4.1LG15 : 8463821 .. 8464162 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAACCTCAATTTCAAACTCTTAACCTAACCACTGCTTCTCGTCAGAAACACCGTCGCCGTAGCCGGAGGAAAGTACCGGCTACCTGCAATGTTAAGAAGATTCACAGAAACGGCGCTGTTTTTGCCTCGGAAGAACCGGATGAGAAGGAGGTTGTCGAACGGAAGATTCGCGCATTGCAGAGTATTGTACCGGGAGGGGAATCGCTTGGAGTCGACAAGTTGTTTGAACAGACGGCGGAGTATATAATGAACTTGCAGCATCAAGTGAAGGCCATGAGAGCGCTCTCGAGCTTTTTTGAGAGCTTGGAGAAGGAGAAAAGCGAGTGTGGAGGTTGA

mRNA sequence

ATGGACAAACCTCAATTTCAAACTCTTAACCTAACCACTGCTTCTCGTCAGAAACACCGTCGCCGTAGCCGGAGGAAAGTACCGGCTACCTGCAATGTTAAGAAGATTCACAGAAACGGCGCTGTTTTTGCCTCGGAAGAACCGGATGAGAAGGAGGTTGTCGAACGGAAGATTCGCGCATTGCAGAGTATTGTACCGGGAGGGGAATCGCTTGGAGTCGACAAGTTGTTTGAACAGACGGCGGAGTATATAATGAACTTGCAGCATCAAGTGAAGGCCATGAGAGCGCTCTCGAGCTTTTTTGAGAGCTTGGAGAAGGAGAAAAGCGAGTGTGGAGGTTGA

Coding sequence (CDS)

ATGGACAAACCTCAATTTCAAACTCTTAACCTAACCACTGCTTCTCGTCAGAAACACCGTCGCCGTAGCCGGAGGAAAGTACCGGCTACCTGCAATGTTAAGAAGATTCACAGAAACGGCGCTGTTTTTGCCTCGGAAGAACCGGATGAGAAGGAGGTTGTCGAACGGAAGATTCGCGCATTGCAGAGTATTGTACCGGGAGGGGAATCGCTTGGAGTCGACAAGTTGTTTGAACAGACGGCGGAGTATATAATGAACTTGCAGCATCAAGTGAAGGCCATGAGAGCGCTCTCGAGCTTTTTTGAGAGCTTGGAGAAGGAGAAAAGCGAGTGTGGAGGTTGA

Protein sequence

MDKPQFQTLNLTTASRQKHRRRSRRKVPATCNVKKIHRNGAVFASEEPDEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSECGG
BLAST of Cp4.1LG15g08570 vs. Swiss-Prot
Match: PAR2_ARATH (Transcription factor PAR2 OS=Arabidopsis thaliana GN=PAR2 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.4e-13
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 1

Query: 11  LTTASRQKHRRRSRRKVPATCNVKKIHRNGAVFASEEPDEKEVVERKIRALQSIVPGGES 70
           + T+S   +RR  +R   AT +V +          +E +++E VE KI ALQ+IVPGG  
Sbjct: 22  VNTSSTGFNRRTRQRLSDATASVSETD------VEDEDEDEEGVEEKIEALQTIVPGGTE 81

Query: 71  LGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSECGG 114
           LGVD LFE+TA YI+ LQ Q+ A++ L++F E  EK+  + GG
Sbjct: 82  LGVDALFEETASYILALQCQINAIKVLTTFLERCEKKDMKFGG 118

BLAST of Cp4.1LG15g08570 vs. Swiss-Prot
Match: PAR1_ARATH (Transcription factor PAR1 OS=Arabidopsis thaliana GN=PAR1 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.1e-11
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 20  RRRSRRKVPATCNVKKIHRNGAVFASEEPDEKEVVERKIRALQSIVPGGESLGVDKLFEQ 79
           RR  RR      +V++          E  +E++ V+ KI ALQ I+PGG +LGVD LFE+
Sbjct: 32  RRTKRRLSETNASVREDRE-------EAEEEEDEVKEKIEALQRIIPGGAALGVDALFEE 91

Query: 80  TAEYIMNLQHQVKAMRALSSFFESLEKEKSECGG 114
           TA YI++LQ Q+K ++ L+SF + +++E  + GG
Sbjct: 92  TAGYILSLQCQIKTIKVLTSFLQRIDQEDMKFGG 118

BLAST of Cp4.1LG15g08570 vs. TrEMBL
Match: A0A0A0KGU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423410 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-42
Identity = 99/125 (79.20%), Postives = 101/125 (80.80%), Query Frame = 1

Query: 1   MDKPQFQTLNLTTASRQK------------HRRRSRRKVPATCNVKKIHRNGAVFASEEP 60
           MDKPQFQTL  TT SRQK            HRRRSRR+VP +    KIHRN  VF SEEP
Sbjct: 1   MDKPQFQTLKSTTTSRQKTLILNALHKSSLHRRRSRRRVPTSRIADKIHRNHPVFTSEEP 60

Query: 61  DEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 114
           DEKE VERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK
Sbjct: 61  DEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 120

BLAST of Cp4.1LG15g08570 vs. TrEMBL
Match: A0A068UCK9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021586001 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-18
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 1

Query: 16  RQKHRRRSRRKVPATCNVKKIHRNGAVFASEEPDEKEVVERKIRALQSIVPGGESLGVDK 75
           ++K+ RRSRR    + N KK+  +     S E DEK  VE+KI  LQ IVPGGESLGVDK
Sbjct: 18  QEKNSRRSRRSSKRSFNAKKLASSIEEDTSSEEDEKAEVEKKIVVLQKIVPGGESLGVDK 77

Query: 76  LFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSECGG 114
           LFE+TA YIM LQ+QVKA++ L+SF ES +KEK + GG
Sbjct: 78  LFEETAGYIMELQYQVKALKFLASFVESSDKEKRKFGG 115

BLAST of Cp4.1LG15g08570 vs. TrEMBL
Match: W9RT05_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021396 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.2e-18
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1

Query: 44  ASEEPDEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFES 103
           +S E DEKE VERKI+ALQ +VPGGESLGV+KLFE+TA YIM LQ Q+KAM+AL+SFFES
Sbjct: 64  SSVEVDEKEEVERKIKALQRVVPGGESLGVEKLFEETASYIMALQCQLKAMKALASFFES 123

Query: 104 LEKEKSECGG 114
           L+KEK   GG
Sbjct: 124 LDKEKRMFGG 133

BLAST of Cp4.1LG15g08570 vs. TrEMBL
Match: M5XEP5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020302mg PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.4e-17
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 1

Query: 11  LTTASRQKHRRRSRRKVPATCNVKKIHRNGAVFASEEPDEKEVVERKIRALQSIVPGGES 70
           L   S Q+  R+ RR+     N     +NG     E+ D++E VE+KI ALQ IVPGGES
Sbjct: 42  LRAESTQRRARKQRREECMKTNQPSDVKNGG---EEDGDKEEEVEKKIEALQRIVPGGES 101

Query: 71  LGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSECGG 114
           LGVDKLFE+TA YIM LQ Q+KAM+AL+SF E LEKEK + GG
Sbjct: 102 LGVDKLFEETAGYIMALQGQLKAMKALASFVEGLEKEKRKFGG 141

BLAST of Cp4.1LG15g08570 vs. TrEMBL
Match: I1M6X1_SOYBN (BHLH transcription factor OS=Glycine max GN=Glyma14g03180.1 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-17
Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 1

Query: 17  QKHRRRSRRKVPATCNVKKIHRNGAVFASEEPDEKEVVERKIRALQSIVPGGESLGVDKL 76
           ++ RRR R++V     V++          +  D++E +ERKI ALQ IVPGGESLGVDKL
Sbjct: 43  RRSRRRWRKEVAVKDAVQEEEDEEKEEGEDGGDDREEIERKIHALQRIVPGGESLGVDKL 102

Query: 77  FEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSECGG 114
           F++TA YI+ LQ+QVKA+RAL+ FFE LEKEK++ GG
Sbjct: 103 FDETAGYILALQYQVKALRALTGFFEKLEKEKTKFGG 139

BLAST of Cp4.1LG15g08570 vs. TAIR10
Match: AT3G58850.1 (AT3G58850.1 phy rapidly regulated 2)

HSP 1 Score: 74.3 bits (181), Expect = 5.3e-14
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 1

Query: 11  LTTASRQKHRRRSRRKVPATCNVKKIHRNGAVFASEEPDEKEVVERKIRALQSIVPGGES 70
           + T+S   +RR  +R   AT +V +          +E +++E VE KI ALQ+IVPGG  
Sbjct: 22  VNTSSTGFNRRTRQRLSDATASVSETD------VEDEDEDEEGVEEKIEALQTIVPGGTE 81

Query: 71  LGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSECGG 114
           LGVD LFE+TA YI+ LQ Q+ A++ L++F E  EK+  + GG
Sbjct: 82  LGVDALFEETASYILALQCQINAIKVLTTFLERCEKKDMKFGG 118

BLAST of Cp4.1LG15g08570 vs. TAIR10
Match: AT2G42870.1 (AT2G42870.1 phy rapidly regulated 1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-12
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 20  RRRSRRKVPATCNVKKIHRNGAVFASEEPDEKEVVERKIRALQSIVPGGESLGVDKLFEQ 79
           RR  RR      +V++          E  +E++ V+ KI ALQ I+PGG +LGVD LFE+
Sbjct: 32  RRTKRRLSETNASVREDRE-------EAEEEEDEVKEKIEALQRIIPGGAALGVDALFEE 91

Query: 80  TAEYIMNLQHQVKAMRALSSFFESLEKEKSECGG 114
           TA YI++LQ Q+K ++ L+SF + +++E  + GG
Sbjct: 92  TAGYILSLQCQIKTIKVLTSFLQRIDQEDMKFGG 118

BLAST of Cp4.1LG15g08570 vs. NCBI nr
Match: gi|449444983|ref|XP_004140253.1| (PREDICTED: transcription factor PAR2-like [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.5e-42
Identity = 99/125 (79.20%), Postives = 101/125 (80.80%), Query Frame = 1

Query: 1   MDKPQFQTLNLTTASRQK------------HRRRSRRKVPATCNVKKIHRNGAVFASEEP 60
           MDKPQFQTL  TT SRQK            HRRRSRR+VP +    KIHRN  VF SEEP
Sbjct: 1   MDKPQFQTLKSTTTSRQKTLILNALHKSSLHRRRSRRRVPTSRIADKIHRNHPVFTSEEP 60

Query: 61  DEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 114
           DEKE VERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK
Sbjct: 61  DEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 120

BLAST of Cp4.1LG15g08570 vs. NCBI nr
Match: gi|659097277|ref|XP_008449537.1| (PREDICTED: transcription factor PAR2-like [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 6.9e-40
Identity = 97/126 (76.98%), Postives = 100/126 (79.37%), Query Frame = 1

Query: 1   MDKPQFQTLNLTTASRQK------------HRRRSRRKVPATCNVK-KIHRNGAVFASEE 60
           MDKPQFQTL  TT SRQK            HRRRSRR+VP +  +  KIHRN  VF  EE
Sbjct: 1   MDKPQFQTLKSTTTSRQKTLILNALHKSSLHRRRSRRRVPTSRIIADKIHRNHPVFTYEE 60

Query: 61  PDEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKE 114
            DEKE VERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKE
Sbjct: 61  ADEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKE 120

BLAST of Cp4.1LG15g08570 vs. NCBI nr
Match: gi|1009126581|ref|XP_015880233.1| (PREDICTED: transcription factor PAR1 [Ziziphus jujuba])

HSP 1 Score: 102.1 bits (253), Expect = 6.7e-19
Identity = 59/102 (57.84%), Postives = 67/102 (65.69%), Query Frame = 1

Query: 12  TTASRQKHRRRSRRKVPATCNVKKIHRNGAVFASEEPDEKEVVERKIRALQSIVPGGESL 71
           T      HR+  R K      VKK + NG     +E DEKE VERKI ALQ IVPGGESL
Sbjct: 28  TLRRSDSHRKSRRNKQREAMKVKKHNGNGDDEKEQEEDEKEEVERKIEALQRIVPGGESL 87

Query: 72  GVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSECGG 114
           GVDKLFE+TA YI+ LQ Q+KAMRAL+  FE  EKEK + GG
Sbjct: 88  GVDKLFEETAGYIIALQCQLKAMRALTCLFEGFEKEKRKFGG 129

BLAST of Cp4.1LG15g08570 vs. NCBI nr
Match: gi|661890684|emb|CDP06181.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 99.8 bits (247), Expect = 3.3e-18
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 1

Query: 16  RQKHRRRSRRKVPATCNVKKIHRNGAVFASEEPDEKEVVERKIRALQSIVPGGESLGVDK 75
           ++K+ RRSRR    + N KK+  +     S E DEK  VE+KI  LQ IVPGGESLGVDK
Sbjct: 18  QEKNSRRSRRSSKRSFNAKKLASSIEEDTSSEEDEKAEVEKKIVVLQKIVPGGESLGVDK 77

Query: 76  LFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSECGG 114
           LFE+TA YIM LQ+QVKA++ L+SF ES +KEK + GG
Sbjct: 78  LFEETAGYIMELQYQVKALKFLASFVESSDKEKRKFGG 115

BLAST of Cp4.1LG15g08570 vs. NCBI nr
Match: gi|703120720|ref|XP_010102162.1| (hypothetical protein L484_021396 [Morus notabilis])

HSP 1 Score: 98.6 bits (244), Expect = 7.4e-18
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1

Query: 44  ASEEPDEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFES 103
           +S E DEKE VERKI+ALQ +VPGGESLGV+KLFE+TA YIM LQ Q+KAM+AL+SFFES
Sbjct: 64  SSVEVDEKEEVERKIKALQRVVPGGESLGVEKLFEETASYIMALQCQLKAMKALASFFES 123

Query: 104 LEKEKSECGG 114
           L+KEK   GG
Sbjct: 124 LDKEKRMFGG 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PAR2_ARATH9.4e-1342.72Transcription factor PAR2 OS=Arabidopsis thaliana GN=PAR2 PE=3 SV=1[more]
PAR1_ARATH5.1e-1140.43Transcription factor PAR1 OS=Arabidopsis thaliana GN=PAR1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KGU6_CUCSA1.0e-4279.20Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423410 PE=4 SV=1[more]
A0A068UCK9_COFCA2.3e-1857.14Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021586001 PE=4 SV=1[more]
W9RT05_9ROSA5.2e-1872.86Uncharacterized protein OS=Morus notabilis GN=L484_021396 PE=4 SV=1[more]
M5XEP5_PRUPE3.4e-1755.34Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020302mg PE=4 SV=1[more]
I1M6X1_SOYBN4.4e-1753.61BHLH transcription factor OS=Glycine max GN=Glyma14g03180.1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT3G58850.15.3e-1442.72 phy rapidly regulated 2[more]
AT2G42870.12.9e-1240.43 phy rapidly regulated 1[more]
Match NameE-valueIdentityDescription
gi|449444983|ref|XP_004140253.1|1.5e-4279.20PREDICTED: transcription factor PAR2-like [Cucumis sativus][more]
gi|659097277|ref|XP_008449537.1|6.9e-4076.98PREDICTED: transcription factor PAR2-like [Cucumis melo][more]
gi|1009126581|ref|XP_015880233.1|6.7e-1957.84PREDICTED: transcription factor PAR1 [Ziziphus jujuba][more]
gi|661890684|emb|CDP06181.1|3.3e-1857.14unnamed protein product [Coffea canephora][more]
gi|703120720|ref|XP_010102162.1|7.4e-1872.86hypothetical protein L484_021396 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046983 protein dimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g08570.1Cp4.1LG15g08570.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 46..113
score: 7.9
NoneNo IPR availablePANTHERPTHR33124:SF3EXPRESSED PROTEINcoord: 46..113
score: 7.9

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g08570Cp4.1LG04g02420Cucurbita pepo (Zucchini)cpecpeB267