CmaCh19G010710 (gene) Cucurbita maxima (Rimu)

NameCmaCh19G010710
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhy rapidly regulated 1, putative
LocationCma_Chr19 : 8969453 .. 8969794 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAACCTCAATTTCAAACTCTCAACCTAACCACCGCTTCTCGTCAGAAACACCGTCGCCGTAGCCGGAGGAAAGTACCGGCTACCTGCAATGCCAAGAAGATTCACCGAAACGGCGCTGTTTTTGCCTCTGGAGAACCTGATGAGAAGGAGGTCGTCGAACGGAAGATTCGCGCATTGCAGAGTATTGTACCGGGAGGTGAATCGCTTGGAGTCGACAAGTTGTTTGAACAGACGGCGGAGTATATAATGAACTTGCAGCATCAAGTGAAGGCCATGAGAGCTCTCTCGACCTTTTTTGAGAGCTTGGAGAAGGAGAAAAGCGAGTGCGGAGGTTGA

mRNA sequence

ATGGACAAACCTCAATTTCAAACTCTCAACCTAACCACCGCTTCTCGTCAGAAACACCGTCGCCGTAGCCGGAGGAAAGTACCGGCTACCTGCAATGCCAAGAAGATTCACCGAAACGGCGCTGTTTTTGCCTCTGGAGAACCTGATGAGAAGGAGGTCGTCGAACGGAAGATTCGCGCATTGCAGAGTATTGTACCGGGAGGTGAATCGCTTGGAGTCGACAAGTTGTTTGAACAGACGGCGGAGTATATAATGAACTTGCAGCATCAAGTGAAGGCCATGAGAGCTCTCTCGACCTTTTTTGAGAGCTTGGAGAAGGAGAAAAGCGAGTGCGGAGGTTGA

Coding sequence (CDS)

ATGGACAAACCTCAATTTCAAACTCTCAACCTAACCACCGCTTCTCGTCAGAAACACCGTCGCCGTAGCCGGAGGAAAGTACCGGCTACCTGCAATGCCAAGAAGATTCACCGAAACGGCGCTGTTTTTGCCTCTGGAGAACCTGATGAGAAGGAGGTCGTCGAACGGAAGATTCGCGCATTGCAGAGTATTGTACCGGGAGGTGAATCGCTTGGAGTCGACAAGTTGTTTGAACAGACGGCGGAGTATATAATGAACTTGCAGCATCAAGTGAAGGCCATGAGAGCTCTCTCGACCTTTTTTGAGAGCTTGGAGAAGGAGAAAAGCGAGTGCGGAGGTTGA

Protein sequence

MDKPQFQTLNLTTASRQKHRRRSRRKVPATCNAKKIHRNGAVFASGEPDEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSTFFESLEKEKSECGG
BLAST of CmaCh19G010710 vs. Swiss-Prot
Match: PAR2_ARATH (Transcription factor PAR2 OS=Arabidopsis thaliana GN=PAR2 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 1

Query: 11  LTTASRQKHRRRSRRKVPATCNAKKIHRNGAVFASGEPDEKEVVERKIRALQSIVPGGES 70
           + T+S   +RR  +R   AT +  +           E +++E VE KI ALQ+IVPGG  
Sbjct: 22  VNTSSTGFNRRTRQRLSDATASVSETD------VEDEDEDEEGVEEKIEALQTIVPGGTE 81

Query: 71  LGVDKLFEQTAEYIMNLQHQVKAMRALSTFFESLEKEKSECGG 114
           LGVD LFE+TA YI+ LQ Q+ A++ L+TF E  EK+  + GG
Sbjct: 82  LGVDALFEETASYILALQCQINAIKVLTTFLERCEKKDMKFGG 118

BLAST of CmaCh19G010710 vs. Swiss-Prot
Match: PAR1_ARATH (Transcription factor PAR1 OS=Arabidopsis thaliana GN=PAR1 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-11
Identity = 37/93 (39.78%), Postives = 62/93 (66.67%), Query Frame = 1

Query: 21  RRSRRKVPATCNAKKIHRNGAVFASGEPDEKEVVERKIRALQSIVPGGESLGVDKLFEQT 80
           RR++R++  T  + +  R  A       +E++ V+ KI ALQ I+PGG +LGVD LFE+T
Sbjct: 32  RRTKRRLSETNASVREDREEA------EEEEDEVKEKIEALQRIIPGGAALGVDALFEET 91

Query: 81  AEYIMNLQHQVKAMRALSTFFESLEKEKSECGG 114
           A YI++LQ Q+K ++ L++F + +++E  + GG
Sbjct: 92  AGYILSLQCQIKTIKVLTSFLQRIDQEDMKFGG 118

BLAST of CmaCh19G010710 vs. TrEMBL
Match: A0A0A0KGU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423410 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.0e-42
Identity = 98/125 (78.40%), Postives = 101/125 (80.80%), Query Frame = 1

Query: 1   MDKPQFQTLNLTTASRQK------------HRRRSRRKVPATCNAKKIHRNGAVFASGEP 60
           MDKPQFQTL  TT SRQK            HRRRSRR+VP +  A KIHRN  VF S EP
Sbjct: 1   MDKPQFQTLKSTTTSRQKTLILNALHKSSLHRRRSRRRVPTSRIADKIHRNHPVFTSEEP 60

Query: 61  DEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSTFFESLEKEK 114
           DEKE VERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALS+FFESLEKEK
Sbjct: 61  DEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 120

BLAST of CmaCh19G010710 vs. TrEMBL
Match: A0A068UCK9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021586001 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-18
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 1

Query: 16  RQKHRRRSRRKVPATCNAKKIHRNGAVFASGEPDEKEVVERKIRALQSIVPGGESLGVDK 75
           ++K+ RRSRR    + NAKK+  +     S E DEK  VE+KI  LQ IVPGGESLGVDK
Sbjct: 18  QEKNSRRSRRSSKRSFNAKKLASSIEEDTSSEEDEKAEVEKKIVVLQKIVPGGESLGVDK 77

Query: 76  LFEQTAEYIMNLQHQVKAMRALSTFFESLEKEKSECGG 114
           LFE+TA YIM LQ+QVKA++ L++F ES +KEK + GG
Sbjct: 78  LFEETAGYIMELQYQVKALKFLASFVESSDKEKRKFGG 115

BLAST of CmaCh19G010710 vs. TrEMBL
Match: A0A0B2PW36_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019931 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.7e-17
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1

Query: 49  DEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSTFFESLEKEK 108
           D++E +ERKI ALQ IVPGGESLGVDKLF++TA YI+ LQ+QVKA+RAL+ FFE LEKEK
Sbjct: 72  DDREEIERKIHALQRIVPGGESLGVDKLFDETAGYILALQYQVKALRALTGFFEKLEKEK 131

Query: 109 SECGG 114
           ++ GG
Sbjct: 132 TKFGG 136

BLAST of CmaCh19G010710 vs. TrEMBL
Match: I1JJ47_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G286900 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.5e-17
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 1

Query: 47  EPDEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSTFFESLEK 106
           E D++E +ERKI ALQ IVPGGESLGVDKLF++TA YI+ LQ+QVKA+RAL+ FF+ LEK
Sbjct: 63  EGDDREEIERKIHALQRIVPGGESLGVDKLFDETAGYILALQYQVKALRALTGFFDKLEK 122

Query: 107 EKSECGG 114
           EK++ GG
Sbjct: 123 EKTKFGG 129

BLAST of CmaCh19G010710 vs. TrEMBL
Match: A9P8M3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06090g PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.5e-17
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 1

Query: 21  RRSRRKVPATCNAKKIHRNGAVFASGEPDEKEVVERKIRALQSIVPGGESLGVDKLFEQT 80
           +RSRRK       ++  +   V A GE DEK  V+RKI ALQ I+PGGES GVDKLFE+T
Sbjct: 48  KRSRRKREEMLKVQEKDQASTVGA-GEDDEKAEVDRKIVALQMIIPGGESFGVDKLFEET 107

Query: 81  AEYIMNLQHQVKAMRALSTFFESLEKEKSECGG 114
           A+YIM LQ Q+KAMR L+ F E LEKEK + GG
Sbjct: 108 ADYIMALQCQIKAMRVLAGFLEGLEKEKRKSGG 139

BLAST of CmaCh19G010710 vs. TAIR10
Match: AT3G58850.1 (AT3G58850.1 phy rapidly regulated 2)

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-14
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 1

Query: 11  LTTASRQKHRRRSRRKVPATCNAKKIHRNGAVFASGEPDEKEVVERKIRALQSIVPGGES 70
           + T+S   +RR  +R   AT +  +           E +++E VE KI ALQ+IVPGG  
Sbjct: 22  VNTSSTGFNRRTRQRLSDATASVSETD------VEDEDEDEEGVEEKIEALQTIVPGGTE 81

Query: 71  LGVDKLFEQTAEYIMNLQHQVKAMRALSTFFESLEKEKSECGG 114
           LGVD LFE+TA YI+ LQ Q+ A++ L+TF E  EK+  + GG
Sbjct: 82  LGVDALFEETASYILALQCQINAIKVLTTFLERCEKKDMKFGG 118

BLAST of CmaCh19G010710 vs. TAIR10
Match: AT2G42870.1 (AT2G42870.1 phy rapidly regulated 1)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-12
Identity = 37/93 (39.78%), Postives = 62/93 (66.67%), Query Frame = 1

Query: 21  RRSRRKVPATCNAKKIHRNGAVFASGEPDEKEVVERKIRALQSIVPGGESLGVDKLFEQT 80
           RR++R++  T  + +  R  A       +E++ V+ KI ALQ I+PGG +LGVD LFE+T
Sbjct: 32  RRTKRRLSETNASVREDREEA------EEEEDEVKEKIEALQRIIPGGAALGVDALFEET 91

Query: 81  AEYIMNLQHQVKAMRALSTFFESLEKEKSECGG 114
           A YI++LQ Q+K ++ L++F + +++E  + GG
Sbjct: 92  AGYILSLQCQIKTIKVLTSFLQRIDQEDMKFGG 118

BLAST of CmaCh19G010710 vs. TAIR10
Match: AT3G05800.1 (AT3G05800.1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1)

HSP 1 Score: 47.4 bits (111), Expect = 6.9e-06
Identity = 30/85 (35.29%), Postives = 44/85 (51.76%), Query Frame = 1

Query: 21  RRSRRKVPATCNAKKIHRNGAVFASGEPDEKEVVERKIRALQSIVPGGESLGVDKLFEQT 80
           RR R   PA+  A  I  +G    SG   +   V  ++R L  +VPG     + +L ++T
Sbjct: 121 RRRRNTKPASALAAAIRGSGG---SGRRRKLSAVGNRVRVLGGLVPGCRRTALPELLDET 180

Query: 81  AEYIMNLQHQVKAMRALSTFFESLE 106
           A+YI  L+ QV+AM ALS     L+
Sbjct: 181 ADYIAALEMQVRAMTALSKILSELQ 202

BLAST of CmaCh19G010710 vs. NCBI nr
Match: gi|449444983|ref|XP_004140253.1| (PREDICTED: transcription factor PAR2-like [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 4.3e-42
Identity = 98/125 (78.40%), Postives = 101/125 (80.80%), Query Frame = 1

Query: 1   MDKPQFQTLNLTTASRQK------------HRRRSRRKVPATCNAKKIHRNGAVFASGEP 60
           MDKPQFQTL  TT SRQK            HRRRSRR+VP +  A KIHRN  VF S EP
Sbjct: 1   MDKPQFQTLKSTTTSRQKTLILNALHKSSLHRRRSRRRVPTSRIADKIHRNHPVFTSEEP 60

Query: 61  DEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSTFFESLEKEK 114
           DEKE VERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALS+FFESLEKEK
Sbjct: 61  DEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 120

BLAST of CmaCh19G010710 vs. NCBI nr
Match: gi|659097277|ref|XP_008449537.1| (PREDICTED: transcription factor PAR2-like [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 2.6e-39
Identity = 96/126 (76.19%), Postives = 99/126 (78.57%), Query Frame = 1

Query: 1   MDKPQFQTLNLTTASRQK------------HRRRSRRKVPAT-CNAKKIHRNGAVFASGE 60
           MDKPQFQTL  TT SRQK            HRRRSRR+VP +   A KIHRN  VF   E
Sbjct: 1   MDKPQFQTLKSTTTSRQKTLILNALHKSSLHRRRSRRRVPTSRIIADKIHRNHPVFTYEE 60

Query: 61  PDEKEVVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSTFFESLEKE 114
            DEKE VERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALS+FFESLEKE
Sbjct: 61  ADEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKE 120

BLAST of CmaCh19G010710 vs. NCBI nr
Match: gi|661890684|emb|CDP06181.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 1

Query: 16  RQKHRRRSRRKVPATCNAKKIHRNGAVFASGEPDEKEVVERKIRALQSIVPGGESLGVDK 75
           ++K+ RRSRR    + NAKK+  +     S E DEK  VE+KI  LQ IVPGGESLGVDK
Sbjct: 18  QEKNSRRSRRSSKRSFNAKKLASSIEEDTSSEEDEKAEVEKKIVVLQKIVPGGESLGVDK 77

Query: 76  LFEQTAEYIMNLQHQVKAMRALSTFFESLEKEKSECGG 114
           LFE+TA YIM LQ+QVKA++ L++F ES +KEK + GG
Sbjct: 78  LFEETAGYIMELQYQVKALKFLASFVESSDKEKRKFGG 115

BLAST of CmaCh19G010710 vs. NCBI nr
Match: gi|1009126581|ref|XP_015880233.1| (PREDICTED: transcription factor PAR1 [Ziziphus jujuba])

HSP 1 Score: 99.4 bits (246), Expect = 4.4e-18
Identity = 58/102 (56.86%), Postives = 65/102 (63.73%), Query Frame = 1

Query: 12  TTASRQKHRRRSRRKVPATCNAKKIHRNGAVFASGEPDEKEVVERKIRALQSIVPGGESL 71
           T      HR+  R K       KK + NG      E DEKE VERKI ALQ IVPGGESL
Sbjct: 28  TLRRSDSHRKSRRNKQREAMKVKKHNGNGDDEKEQEEDEKEEVERKIEALQRIVPGGESL 87

Query: 72  GVDKLFEQTAEYIMNLQHQVKAMRALSTFFESLEKEKSECGG 114
           GVDKLFE+TA YI+ LQ Q+KAMRAL+  FE  EKEK + GG
Sbjct: 88  GVDKLFEETAGYIIALQCQLKAMRALTCLFEGFEKEKRKFGG 129

BLAST of CmaCh19G010710 vs. NCBI nr
Match: gi|470140199|ref|XP_004305830.1| (PREDICTED: transcription factor PAR1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 98.2 bits (243), Expect = 9.7e-18
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 1

Query: 8   TLNLTTASRQKHRRRS---RRKVPATCNAKKIHRNGAVFASGEPDEKEVVERKIRALQSI 67
           T N +++ R K RR S   +    +  +AK +  +G    +   D++E VERKI ALQ I
Sbjct: 35  TANSSSSRRIKARRESQCMKNSAASQESAKDVKAHGGEEEAAAADDREEVERKIEALQRI 94

Query: 68  VPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSTFFESLEKEKSECG 113
           VPGGESLGVDKLFE+TA YIM LQ Q+KAM+AL++FFE LEKEK + G
Sbjct: 95  VPGGESLGVDKLFEETAGYIMTLQVQLKAMKALASFFEGLEKEKKKFG 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PAR2_ARATH1.2e-1242.72Transcription factor PAR2 OS=Arabidopsis thaliana GN=PAR2 PE=3 SV=1[more]
PAR1_ARATH3.0e-1139.78Transcription factor PAR1 OS=Arabidopsis thaliana GN=PAR1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KGU6_CUCSA3.0e-4278.40Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423410 PE=4 SV=1[more]
A0A068UCK9_COFCA1.0e-1857.14Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021586001 PE=4 SV=1[more]
A0A0B2PW36_GLYSO5.7e-1770.77Uncharacterized protein OS=Glycine soja GN=glysoja_019931 PE=4 SV=1[more]
I1JJ47_SOYBN7.5e-1768.66Uncharacterized protein OS=Glycine max GN=GLYMA_02G286900 PE=4 SV=1[more]
A9P8M3_POPTR7.5e-1758.06Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06090g PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT3G58850.16.9e-1442.72 phy rapidly regulated 2[more]
AT2G42870.11.7e-1239.78 phy rapidly regulated 1[more]
AT3G05800.16.9e-0635.29 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1[more]
Match NameE-valueIdentityDescription
gi|449444983|ref|XP_004140253.1|4.3e-4278.40PREDICTED: transcription factor PAR2-like [Cucumis sativus][more]
gi|659097277|ref|XP_008449537.1|2.6e-3976.19PREDICTED: transcription factor PAR2-like [Cucumis melo][more]
gi|661890684|emb|CDP06181.1|1.5e-1857.14unnamed protein product [Coffea canephora][more]
gi|1009126581|ref|XP_015880233.1|4.4e-1856.86PREDICTED: transcription factor PAR1 [Ziziphus jujuba][more]
gi|470140199|ref|XP_004305830.1|9.7e-1852.78PREDICTED: transcription factor PAR1 [Fragaria vesca subsp. vesca][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G010710.1CmaCh19G010710.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 9..113
score: 1.7
NoneNo IPR availablePANTHERPTHR33124:SF3EXPRESSED PROTEINcoord: 9..113
score: 1.7

The following gene(s) are paralogous to this gene:

None