CmoCh16G004540 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G004540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding family protein
Location	Cmo_Chr16 : 2182911 .. 2184334 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATCGCTCCAACACTCGGATTAGGGCTTTTAGCTTCACCCTCTTCTTCTTCTTCCTCCTCTACTTTTACTCTACACCTCCAGGGACCTCCTTTCTCCGTCTCATTTACGCCATGGACGTCACCAAGAAGCGGAGGATGGACGAAAATGGCGTCGACTCCTCCGACCATTCTTTCTCTAGAATTACTCCTGAAGACGCTCGCAAGATCATTGATCGTTTCACTCCGGACCAGCTTATCGATATTTTACAAGATGCAGTTTCGCGTCACGTGGATGTTCTTGATGCAGTACGGTGTATTGCAGACCGTGATGTCTCCCAGCGGAAGCTGTTTATTCGGGGTCTTAGTTGCGATACTAGTACAGAAGGTTTGCGTTCTCTCTTTTCCGCTTATGGCGAGCTTGAAGAAGCTGTTGTTATTATTGACAAGGTGACTGGGAAATCGAAAGGTTATGGCTTTGTGACTTTTAAGCATGTTGATGGTTCTATACTGGCTTTGAAAGAACCGAGCAAGACAATTGATGGCCGCGTTACGGTGACGCAATTGGCTGCAGTGGGAGTTTCTGGGCAGAGTTCGAACGCTGCAGACTTGTCGTTGAGGAAAATTTATGTGGCGAATGTTCCAATGGATATGCCGGCCGATAAACTGTTGGCACACTTTTCGCTGTATGGAGAAATTGAGGAGGGACCGCTAGGCTTCGATAAGCAGACGGGTAAGTGTAGAGGCTATGCTTTGTTTGTGTACAAAAAGGCAGAGGGTGCTCAAGCAGCTCTGGTTGATCCAATCAAGACGATTGATGGAAGGCAGTTGAGTTGTAAATACGCTAACGATGGGAAAAAAGGGAAACCTGGCGGTGGGACGGATGGAATTCAAACGACGGGAGCGGGTCAAGGAAACTTGCATGGAGATGGTATGCCTATGGCTCCTCCATCAGCAATCCCCGGTTCGGGCGGACAATATGGTGGTCCCGGTGGCATGGGATCGTATGGAGGCTTTTCTGGTGGCCCTCAAGGGGCGCAGCCACTTGGTCACCATCCGCTCAACTCTTCAATGGGGCCAGGAATATCCTCTGTCGGTAGTCAGGCTCTATCTTCGCAGGGCAGCTCCGGCGGATATGGTGGCGGTCCATATGGTGGTGGGTACGGCGGGCCCGGTTCCTCAATATATGGCGGTATGGGAAGTGTAGGTGGGGGCTTGGGTAGTTCTGGAGGTGGATTGGGCGGAGCTGGGGGTGTTTCATCACTATATAGGTTATCACAGAGTTCGGTTGGAATGCCTTCTGGTGGTTATCCGGATAGTGGGCATTATAGTAGCATGTCATCAGCATCCGGGCACCCAAATCACCACCATCAACAGGCAGGAGCATCACCATCACCACGTGTTCCACCTGGAGGATTGTATCCCAATATGCCACCATATTACTGA

mRNA sequence

GTCATCGCTCCAACACTCGGATTAGGGCTTTTAGCTTCACCCTCTTCTTCTTCTTCCTCCTCTACTTTTACTCTACACCTCCAGGGACCTCCTTTCTCCGTCTCATTTACGCCATGGACGTCACCAAGAAGCGGAGGATGGACGAAAATGGCGTCGACTCCTCCGACCATTCTTTCTCTAGAATTACTCCTGAAGACGCTCGCAAGATCATTGATCGTTTCACTCCGGACCAGCTTATCGATATTTTACAAGATGCAGTTTCGCGTCACGTGGATGTTCTTGATGCAGTACGGTGTATTGCAGACCGTGATGTCTCCCAGCGGAAGCTGTTTATTCGGGGTCTTAGTTGCGATACTAGTACAGAAGGTTTGCGTTCTCTCTTTTCCGCTTATGGCGAGCTTGAAGAAGCTGTTGTTATTATTGACAAGGTGACTGGGAAATCGAAAGGTTATGGCTTTGTGACTTTTAAGCATGTTGATGGTTCTATACTGGCTTTGAAAGAACCGAGCAAGACAATTGATGGCCGCGTTACGGTGACGCAATTGGCTGCAGTGGGAGTTTCTGGGCAGAGTTCGAACGCTGCAGACTTGTCGTTGAGGAAAATTTATGTGGCGAATGTTCCAATGGATATGCCGGCCGATAAACTGTTGGCACACTTTTCGCTGTATGGAGAAATTGAGGAGGGACCGCTAGGCTTCGATAAGCAGACGGGTAAGTGTAGAGGCTATGCTTTGTTTGTGTACAAAAAGGCAGAGGGTGCTCAAGCAGCTCTGGTTGATCCAATCAAGACGATTGATGGAAGGCAGTTGAGTTGTAAATACGCTAACGATGGGAAAAAAGGGAAACCTGGCGGTGGGACGGATGGAATTCAAACGACGGGAGCGGGTCAAGGAAACTTGCATGGAGATGGTATGCCTATGGCTCCTCCATCAGCAATCCCCGGTTCGGGCGGACAATATGGTGGTCCCGGTGGCATGGGATCGTATGGAGGCTTTTCTGGTGGCCCTCAAGGGGCGCAGCCACTTGGTCACCATCCGCTCAACTCTTCAATGGGGCCAGGAATATCCTCTGTCGGTAGTCAGGCTCTATCTTCGCAGGGCAGCTCCGGCGGATATGGTGGCGGTCCATATGGTGGTGGGTACGGCGGGCCCGGTTCCTCAATATATGGCGGTATGGGAAGTGTAGGTGGGGGCTTGGGTAGTTCTGGAGGTGGATTGGGCGGAGCTGGGGGTGTTTCATCACTATATAGGTTATCACAGAGTTCGGTTGGAATGCCTTCTGGTGGTTATCCGGATAGTGGGCATTATAGTAGCATGTCATCAGCATCCGGGCACCCAAATCACCACCATCAACAGGCAGGAGCATCACCATCACCACGTGTTCCACCTGGAGGATTGTATCCCAATATGCCACCATATTACTGA

Coding sequence (CDS)

ATGGACGTCACCAAGAAGCGGAGGATGGACGAAAATGGCGTCGACTCCTCCGACCATTCTTTCTCTAGAATTACTCCTGAAGACGCTCGCAAGATCATTGATCGTTTCACTCCGGACCAGCTTATCGATATTTTACAAGATGCAGTTTCGCGTCACGTGGATGTTCTTGATGCAGTACGGTGTATTGCAGACCGTGATGTCTCCCAGCGGAAGCTGTTTATTCGGGGTCTTAGTTGCGATACTAGTACAGAAGGTTTGCGTTCTCTCTTTTCCGCTTATGGCGAGCTTGAAGAAGCTGTTGTTATTATTGACAAGGTGACTGGGAAATCGAAAGGTTATGGCTTTGTGACTTTTAAGCATGTTGATGGTTCTATACTGGCTTTGAAAGAACCGAGCAAGACAATTGATGGCCGCGTTACGGTGACGCAATTGGCTGCAGTGGGAGTTTCTGGGCAGAGTTCGAACGCTGCAGACTTGTCGTTGAGGAAAATTTATGTGGCGAATGTTCCAATGGATATGCCGGCCGATAAACTGTTGGCACACTTTTCGCTGTATGGAGAAATTGAGGAGGGACCGCTAGGCTTCGATAAGCAGACGGGTAAGTGTAGAGGCTATGCTTTGTTTGTGTACAAAAAGGCAGAGGGTGCTCAAGCAGCTCTGGTTGATCCAATCAAGACGATTGATGGAAGGCAGTTGAGTTGTAAATACGCTAACGATGGGAAAAAAGGGAAACCTGGCGGTGGGACGGATGGAATTCAAACGACGGGAGCGGGTCAAGGAAACTTGCATGGAGATGGTATGCCTATGGCTCCTCCATCAGCAATCCCCGGTTCGGGCGGACAATATGGTGGTCCCGGTGGCATGGGATCGTATGGAGGCTTTTCTGGTGGCCCTCAAGGGGCGCAGCCACTTGGTCACCATCCGCTCAACTCTTCAATGGGGCCAGGAATATCCTCTGTCGGTAGTCAGGCTCTATCTTCGCAGGGCAGCTCCGGCGGATATGGTGGCGGTCCATATGGTGGTGGGTACGGCGGGCCCGGTTCCTCAATATATGGCGGTATGGGAAGTGTAGGTGGGGGCTTGGGTAGTTCTGGAGGTGGATTGGGCGGAGCTGGGGGTGTTTCATCACTATATAGGTTATCACAGAGTTCGGTTGGAATGCCTTCTGGTGGTTATCCGGATAGTGGGCATTATAGTAGCATGTCATCAGCATCCGGGCACCCAAATCACCACCATCAACAGGCAGGAGCATCACCATCACCACGTGTTCCACCTGGAGGATTGTATCCCAATATGCCACCATATTACTGA

Homology

[Close]

BLAST of CmoCh16G004540 vs. Swiss-Prot
Match: UBA2C_ARATH (UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 3.9e-123
Identity = 264/445 (59.33%), Postives = 319/445 (71.69%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSF-----SRITPEDARKIIDRFTPDQLIDILQDAVSRHVDV 60
           MD+ KKR++DENG   + +       +R++P+DARKII+RFT DQL+D+LQ+A+ RH DV
Sbjct: 1   MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60

Query: 61  LDAVRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGF 120
           L++VR  AD D+SQRKLFIRGL+ DT+TEGLRSLFS+YG+LEEA+VI+DKVTGKSKGYGF
Sbjct: 61  LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120

Query: 121 VTFKHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPA 180
           VTF HVDG++LALKEPSK IDGRVTVTQLAA G  G  S  AD+S+RKIYVANVP DMPA
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCK 240
           D+LL HF  YG++EEGPLGFDK TGK RG+ALFVYK AEGAQAAL DP+K IDG+ L+CK
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCK 240

Query: 241 YANDGKK-GKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGF 300
            A DGKK GKP  G    Q  G+G G++HG+GM M  P+      G YG  GG+ +YGG+
Sbjct: 241 LAVDGKKGGKP--GMPQAQDGGSGHGHVHGEGMGMVRPA------GPYGAAGGISAYGGY 300

Query: 301 SGGPQGAQPLGH-HPLNSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGP-GSSIYG 360
           SGGP    P  H +  +SSMG G              S GYGG  + GGYGGP G+ +YG
Sbjct: 301 SGGP----PAHHMNSTHSSMGVG--------------SAGYGG--HYGGYGGPGGTGVYG 360

Query: 361 GMGSVGGGLGSSGGGLGGAGGVSSLYRLSQSSVGMP-SGGYPDSGHYSSMSSASGHPNHH 420
           G+          GGG GG G  S  YR+  SS  MP  GGYP+SGHY  +SS++G+P  H
Sbjct: 361 GL----------GGGYGGPGTGSGQYRMPPSS--MPGGGGYPESGHY-GLSSSAGYPGQH 404

Query: 421 HQQAGASPSPRVPPGGLYPNMPPYY 437
           HQ  G SP PRVP GG+YPN PP Y
Sbjct: 421 HQAVGTSPVPRVPHGGMYPNGPPNY 404

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BLAST of CmoCh16G004540 vs. Swiss-Prot
Match: UBA2B_ARATH (UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.0e-39
Identity = 133/386 (34.46%), Postives = 188/386 (48.70%), Query Frame = 1


Query: 27  EDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLFIRGLSCDTSTEGL 86
           E    +++ F+ DQL+ +L++A  RH DV + +R +AD D+  RK+F+ GL  DT  + L
Sbjct: 85  EPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSL 144

Query: 87  RSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSKTIDGRVTVTQLAA 146
              F  YGE+E+   ++DKV+G+SKGYGF+ FK   G+  ALK+P K I  R+T  QLA+
Sbjct: 145 IDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLAS 204

Query: 147 VG--------VSGQSSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEEGPLGFDKQ 206
           +G           Q  N  ++  RKIYV+NV  D+   KLL  FS +GEIEEGPLG DK 
Sbjct: 205 IGPVQGNPVVAPAQHFNPENVQ-RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKA 264

Query: 207 TGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYANDGKKGKPGGGTDGIQTTGAG 266
           TG+ +G+ALFVY+  E A+ AL +P KT +G  L C  ANDG K                
Sbjct: 265 TGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPK--------------QV 324

Query: 267 QGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQGAQPLGHHPLNSSMGPGIS 326
           + + H                  YG PGG G +   +G  Q  Q         +  P I 
Sbjct: 325 KQHQHNHNSHNQNSRYQRNDNNGYGAPGGHGHF--IAGNNQAVQ---------AFNPAIG 384

Query: 327 SVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVGGGLGSSGG-------GLGGA 386
              +  L+SQG+  G          G  G++  G +G +  G G+          G G  
Sbjct: 385 QALTALLASQGAGLGLNQAFGQALLGTLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQ 444

Query: 387 GGVSSLYRLSQSSVGMPSGGYPDSGH 398
            G    Y+  Q   G    G   +G+
Sbjct: 445 AGYQGGYQTQQPGQGGAGRGQHGAGY 444

[Close]

BLAST of CmoCh16G004540 vs. Swiss-Prot
Match: UBA2A_ARATH (UBP1-associated protein 2A OS=Arabidopsis thaliana GN=UBA2A PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-37
Identity = 139/402 (34.58%), Postives = 196/402 (48.76%), Query Frame = 1


Query: 27  EDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLFIRGLSCDTSTEGL 86
           E  + +++ F+ +Q++ +L++A  +HVDV + +R +AD D   RK+F+ GL  DT TE L
Sbjct: 97  EPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETL 156

Query: 87  RSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSKTIDGRVTVTQL-- 146
              F  YGE+E+   + DK++GKSKGYGF+ +K   G+  ALK+P K I  R+T  QL  
Sbjct: 157 IEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLAS 216

Query: 147 ------------AAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEEGP 206
                       AAV    Q SN ++ + +KIYV+NV  ++   KLL  FS +GEIEEGP
Sbjct: 217 KGPVFGGAPIAAAAVSAPAQHSN-SEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGP 276

Query: 207 LGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYANDGKKGKPGGGTDGI 266
           LG DK TG+ +G+ LFVYK +E A+ AL +P KT +G  L C+ A DG   KPG      
Sbjct: 277 LGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGP--KPG------ 336

Query: 267 QTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQGAQPLGHHPLNSS 326
                 Q   H +      P         YG PGG G     +G P G        +N +
Sbjct: 337 -----KQQQHHHNPHAYNNPRYQRNDNNGYGPPGGHGHL--MAGNPAGMGGPTAQVINPA 396

Query: 327 MGPGIS--------------SVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVG 386
           +G  ++              ++G   L S G++ G      G G G P    YG      
Sbjct: 397 IGQALTALLASQGAGLAFNPAIGQALLGSLGTAAGVNP---GNGVGMPTG--YGTQAMAP 456

Query: 387 GGLGSSGGGLGGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSS 401
           G +   G   G  GG    Y+  Q   G  S G    G Y +
Sbjct: 457 GTMPGYGTQPGLQGG----YQTPQPGQGGTSRGQHGVGPYGT 473

[Close]

BLAST of CmoCh16G004540 vs. Swiss-Prot
Match: UBA1A_ARATH (UBP1-associated proteins 1A OS=Arabidopsis thaliana GN=UBA1A PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-23
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 1


Query: 15  DSSD-HSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLF 74
           DSSD  S +   PE+ R+++  ++ DQL+D++  A      +  AV   ADRDV+ RK+F
Sbjct: 48  DSSDSESDNEFDPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIF 107

Query: 75  IRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSK 134
           + GL  +T+ E L  +F  YGE+EE  V+IDK TGK+KG+GFV FK   G+  ALKEP K
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKK 167

Query: 135 TIDGRVTVTQLAAVG 149
            I  R    QLA++G
Sbjct: 168 RILNRTATCQLASMG 182

[Close]

BLAST of CmoCh16G004540 vs. Swiss-Prot
Match: ROA0_HUMAN (Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-21
Identity = 109/338 (32.25%), Postives = 153/338 (45.27%), Query Frame = 1


Query: 71  KLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKE 130
           KLFI GL+  TS  GLR  F A+G L + VV+++  T +S+ +GFVT+ +V+ +  A+  
Sbjct: 8   KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67

Query: 131 PSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEE 190
               +DG  TV    AV     +   A   ++K++V  +  D+    L+ HFS +G +E+
Sbjct: 68  SPHAVDGN-TVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEK 127

Query: 191 GPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYANDGKKGKPGGGTD 250
             +  DKQ+GK RG+    ++  + A  A V     I G ++  K A   +    GGG  
Sbjct: 128 AEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGG 187

Query: 251 GIQTTGAGQGNL-HGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQGAQPLGHHPL 310
           G +++  G+G    G G           +G   GG GG  SYGG+ GG  G         
Sbjct: 188 GSRSSRGGRGGRGRGGGRDQ--------NGLSKGGGGGYNSYGGYGGGGGG--------- 247

Query: 311 NSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGPGS-----SIYGGMGSVGGGLGSS 370
                      G  A    G    YGG  YG G+GG GS     S YG M S GGG    
Sbjct: 248 -----------GYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGG---- 304

Query: 371 GGGLGGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSSMS 403
           GGG    GG        +S+ G   GGY   G Y   S
Sbjct: 308 GGGGSSWGG--------RSNSGPYRGGYGGGGGYGGSS 304

[Close]

BLAST of CmoCh16G004540 vs. TrEMBL
Match: A0A0A0KYY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083660 PE=4 SV=1)

HSP 1 Score: 759.6 bits (1960), Expect = 2.1e-216
Identity = 401/436 (91.97%), Postives = 415/436 (95.18%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVR 60
           MDVTKKRRMDENGVDSS+ SFSRITPEDARKIIDRFTPDQLIDILQDAVSRH+DVLDAVR
Sbjct: 1   MDVTKKRRMDENGVDSSESSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHLDVLDAVR 60

Query: 61  CIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKH 120
            IADRDVSQRKLFIRGLSCDTSTEGLRSLFS+YGELEEAVVIIDK TGKSKGYGFVTFKH
Sbjct: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSSYGELEEAVVIIDKATGKSKGYGFVTFKH 120

Query: 121 VDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLA 180
           VDG++LALKEPSKTIDGRVTVTQLAAVG+SGQ+SNAADLSLRKIYVANVPMDMPADKLLA
Sbjct: 121 VDGALLALKEPSKTIDGRVTVTQLAAVGISGQNSNAADLSLRKIYVANVPMDMPADKLLA 180

Query: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYANDG 240
           HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKK EGAQAALVDPIKTIDGRQLSCK+ANDG
Sbjct: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240

Query: 241 KKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQG 300
           KKGKPGGG DG QT GAGQGN+HGDGMPMAPPSA+PGSGGQYGGPGGMGSYGGFS G QG
Sbjct: 241 KKGKPGGGPDGNQTQGAGQGNVHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSGLQG 300

Query: 301 AQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVGGG 360
           AQPL HHPLNSSMGPG+SSVG QA SS GSSGGYGGGPYGGGYGGPG SIYGGMGSVGGG
Sbjct: 301 AQPLAHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPG-SIYGGMGSVGGG 360

Query: 361 LGSSGGGLGGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSSMSSASGHPNHHHQQAGASPS 420
           LG SGGGLGGAGG SSLYRL QSSVGMPSGGYPDSGHY SMSSASGHPN HHQ AG SP+
Sbjct: 361 LGGSGGGLGGAGGASSLYRLPQSSVGMPSGGYPDSGHY-SMSSASGHPNQHHQPAGTSPA 420

Query: 421 PRVPPGGLYPNMPPYY 437
           PRVPPGG+YPN+PPYY
Sbjct: 421 PRVPPGGMYPNVPPYY 434

[Close]

BLAST of CmoCh16G004540 vs. TrEMBL
Match: M5WGI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005857mg PE=4 SV=1)

HSP 1 Score: 548.1 bits (1411), Expect = 9.5e-153
Identity = 317/453 (69.98%), Postives = 358/453 (79.03%), Query Frame = 1


Query: 1   MDVTKKRRMDENGV--DSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDA 60
           MD +KKR++DENGV  D+   S  +++PEDARK+I+RF PDQLIDILQDAV+RHVDVLDA
Sbjct: 1   MDPSKKRKLDENGVVLDTDPSSIPKLSPEDARKLIERFNPDQLIDILQDAVTRHVDVLDA 60

Query: 61  VRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTF 120
           VR IAD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEA+VI+DKVTGKS+GYGFVTF
Sbjct: 61  VRSIADLDASQRKLFIRGLGWDTTTEGLRALFSAYGELEEAIVILDKVTGKSRGYGFVTF 120

Query: 121 KHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQ---SSNAADLSLRKIYVANVPMDMPA 180
           +HVDG++LALKEPSK IDGR+TVTQLAA G S     S+NAAD+SLRKIYVANVP DMPA
Sbjct: 121 RHVDGALLALKEPSKKIDGRMTVTQLAAAGNSSSNVSSNNAADVSLRKIYVANVPYDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCK 240
           DKLLAHFS YGEIEEGPLGFDKQTGKC+GYALFVYK  EGAQAALVDP+K I+GRQL+CK
Sbjct: 181 DKLLAHFSFYGEIEEGPLGFDKQTGKCKGYALFVYKTPEGAQAALVDPVKNIEGRQLTCK 240

Query: 241 YANDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFS 300
            A DGKKGKP G   G Q  G+G  N HGDGM +A PS+I    GQYGGPGG+GSYGGFS
Sbjct: 241 LAIDGKKGKPDGPGQG-QGPGSGP-NAHGDGMGLAQPSSI---AGQYGGPGGIGSYGGFS 300

Query: 301 GGPQGAQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYG---GGPYGGGYGGPGSSIYG 360
           GG QG  PLGHHPL    GPG+SSVG+Q  S  G+ GGYG   GGPYG  YGGPGS  YG
Sbjct: 301 GGHQGPPPLGHHPLG---GPGLSSVGNQVNSGLGAGGGYGAGLGGPYGN-YGGPGSVGYG 360

Query: 361 -----GMGSVGGGLG--SSGGGL--GGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSSMSS 420
                G+G  GGGLG  +SGGG   GG G  SSLY L+ SS G+PS  +P+SGHY     
Sbjct: 361 LGGTGGLGGAGGGLGGAASGGGAPGGGVGTGSSLYGLAPSSAGLPSSRFPESGHY----G 420

Query: 421 ASGHPNHHHQQAGASPSPRVPPGGLYPNMPPYY 437
            S + N HHQQAG SP PRVPPGG+YPN+PPYY
Sbjct: 421 LSSYQNQHHQQAGTSPMPRVPPGGMYPNVPPYY 440

[Close]

BLAST of CmoCh16G004540 vs. TrEMBL
Match: A5ADJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g01570 PE=4 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 2.6e-142
Identity = 309/458 (67.47%), Postives = 355/458 (77.51%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSD-HSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAV 60
           MD TKKR+MDENG+ S+D  S +++ PEDARKII+ F  DQL++ILQ+A  RH+DVLDA+
Sbjct: 1   MDATKKRKMDENGLVSTDGDSLTKLAPEDARKIIEPFGHDQLLEILQNAAVRHLDVLDAI 60

Query: 61  RCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFK 120
           R IADRD++QRKLFIRGL  DT+TEGLR LFSAYGELEEAVVI+DKVT KSKGYGFVTFK
Sbjct: 61  RSIADRDLTQRKLFIRGLGWDTTTEGLRQLFSAYGELEEAVVILDKVTAKSKGYGFVTFK 120

Query: 121 HVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAA--DLSLRKIYVANVPMDMPADK 180
           HVDG++LALKEPSK IDGR+TVTQLAA G+SG +SNA+  D+S+RKIYVANVP+DMPAD+
Sbjct: 121 HVDGALLALKEPSKKIDGRMTVTQLAASGLSGPASNASAVDVSMRKIYVANVPVDMPADR 180

Query: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYA 240
           LLAHFS YGEIEEGPLGFDKQTGK RG+ALFVYK AE AQAALVDP K IDGRQL CK A
Sbjct: 181 LLAHFSSYGEIEEGPLGFDKQTGKSRGFALFVYKTAEAAQAALVDPTKMIDGRQLVCKLA 240

Query: 241 NDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGS-GGQY-GGPGGMGSYGGFS 300
            +GKKGK GG       TG      HGDG+ + P  ++PGS G QY GGPGG+ +YGGFS
Sbjct: 241 IEGKKGKTGGPAQA--PTGVPGEAGHGDGLGVPPQGSMPGSLGSQYPGGPGGISAYGGFS 300

Query: 301 GGPQGAQPLG-HHPLNSSM------GPGISSVGSQALSSQGSSGGYG---GGPYGGG-YG 360
           GGP    PLG HHPLNSS+      GPG+S   SQ  SS G S GYG   GGPYG   YG
Sbjct: 301 GGP---PPLGHHHPLNSSLPSSLGGGPGLS---SQVPSSLGGSAGYGAGLGGPYGSAHYG 360

Query: 361 GPGSSIY------GGMGSVGGGLGSSGGGLGGAGGVSSLYRLSQSSVGMPSGGYPDSGHY 420
           GP S+ Y      GG+G   G LG +GG LG AGG SSLYRL  S+VGMPSGGYPDSGHY
Sbjct: 361 GPNSAGYSGLGGAGGLGGAAGALGVAGGALGVAGGGSSLYRLPPSTVGMPSGGYPDSGHY 420

Query: 421 SSMSSASGHPNHHHQQAGASPSPRVPPGGLYPNMPPYY 437
            S+SS+S +P+  HQ AG SP PRVPPGG+YP+ PPYY
Sbjct: 421 -SLSSSSAYPSQIHQPAGTSPVPRVPPGGMYPSGPPYY 449

[Close]

BLAST of CmoCh16G004540 vs. TrEMBL
Match: A0A067DZS6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014397mg PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 2.8e-136
Identity = 296/450 (65.78%), Postives = 341/450 (75.78%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSD-HSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAV 60
           MD  KKR++DENG   SD  S +R+TP+DARKI++R T DQL+D+L  AV+RH DVL++V
Sbjct: 1   MDSIKKRKIDENGAVLSDLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESV 60

Query: 61  RCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFK 120
           R IAD D +QRKLFIRGL  DT+TEGLRS+FSAYGELEEAVVI+DK TGKSKGYGF+TFK
Sbjct: 61  RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120

Query: 121 HVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQS-SNAADLSLRKIYVANVPMDMPADKL 180
           H+DG++LALKEPSK IDGRVTVT LA  G SG S +N  D+SLRKI+V NVP DM ADKL
Sbjct: 121 HIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKL 180

Query: 181 LAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYAN 240
           LAHF+ YGEIEEGPLGFDKQTGK +G+ALFVYK AEGAQAALVDPIKT+DG+QL+C+ A 
Sbjct: 181 LAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA- 240

Query: 241 DGKKGKPGGGTDGIQTTGAGQGNL---HGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFS 300
           D KK KP G        G G GN+   HGDGM M PPSA    GG YGGPGG G    FS
Sbjct: 241 DNKKAKPMG------PDGGGPGNVSMNHGDGMGMVPPSA----GGSYGGPGGHGY--PFS 300

Query: 301 GGPQGAQPLGHHPLNSSM-GPGISSVGSQALSSQG--SSGGYG---GGPYGGGYGGPGSS 360
           G P    PLGHH LNSS+ GPG      Q  SS G   +GGYG   GGPY GGYGGPGS+
Sbjct: 301 GPP----PLGHH-LNSSLGGPG------QVPSSMGGVGAGGYGAGLGGPY-GGYGGPGST 360

Query: 361 IYGGMGSVGGGLGSS---GGGLGGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSSMSSASG 420
            YGG+G  GGG G+    GG  GG GG SSLYRL  SS GMPSGGYP++GHY   S+++G
Sbjct: 361 GYGGLGGAGGGAGAGGALGGAAGGLGGGSSLYRLPPSSAGMPSGGYPEAGHYGLSSTSAG 420

Query: 421 HPNHHHQQAGASPSPRVPPGGLYPNMPPYY 437
           +P+ HHQ AG SP PRVPPGG+YPN+PPYY
Sbjct: 421 YPSQHHQAAGTSPVPRVPPGGMYPNVPPYY 425

[Close]

BLAST of CmoCh16G004540 vs. TrEMBL
Match: V4TWK3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008394mg PE=4 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 2.4e-135
Identity = 295/450 (65.56%), Postives = 340/450 (75.56%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSD-HSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAV 60
           MD  KKR++DENG   SD  S +R+T +DARKI++R T DQL+D+L  AV+RH DVL++V
Sbjct: 1   MDSIKKRKIDENGAVLSDLESPNRLTQQDARKIVERLTSDQLLDVLSSAVARHDDVLESV 60

Query: 61  RCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFK 120
           R IAD D +QRKLFIRGL  DT+TEGLRS+FSAYGELEEAVVI+DK TGKSKGYGF+TFK
Sbjct: 61  RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120

Query: 121 HVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQS-SNAADLSLRKIYVANVPMDMPADKL 180
           H+DG++LALKEPSK IDGRVTVT LA  G SG S +N  D+SLRKI+V NVP DM ADKL
Sbjct: 121 HIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKL 180

Query: 181 LAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYAN 240
           LAHF+ YGEIEEGPLGFDKQTGK +G+ALFVYK AEGAQAALVDPIKT+DG+QL+C+ A 
Sbjct: 181 LAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA- 240

Query: 241 DGKKGKPGGGTDGIQTTGAGQGNL---HGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFS 300
           D KK KP G        G G GN+   HGDGM M PPSA    GG YGGPGG G    FS
Sbjct: 241 DNKKAKPMG------PDGGGPGNVSMNHGDGMGMVPPSA----GGSYGGPGGHGY--PFS 300

Query: 301 GGPQGAQPLGHHPLNSSM-GPGISSVGSQALSSQG--SSGGYG---GGPYGGGYGGPGSS 360
           G P    PLGHH LNSS+ GPG      Q  SS G   +GGYG   GGPY GGYGGPGS+
Sbjct: 301 GPP----PLGHH-LNSSLGGPG------QVPSSMGGVGAGGYGAGLGGPY-GGYGGPGST 360

Query: 361 IYGGMGSVGGGLGSS---GGGLGGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSSMSSASG 420
            YGG+G  GGG G+    GG  GG GG SSLYRL  SS GMPSGGYP++GHY   S+++G
Sbjct: 361 GYGGLGGAGGGAGAGGALGGAAGGLGGGSSLYRLPPSSAGMPSGGYPEAGHYGLSSTSAG 420

Query: 421 HPNHHHQQAGASPSPRVPPGGLYPNMPPYY 437
           +P+ HHQ AG SP PRVPPGG+YPN+PPYY
Sbjct: 421 YPSQHHQAAGTSPVPRVPPGGMYPNVPPYY 425

[Close]

BLAST of CmoCh16G004540 vs. TAIR10
Match: AT3G15010.1 (AT3G15010.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 443.0 bits (1138), Expect = 2.2e-124
Identity = 264/445 (59.33%), Postives = 319/445 (71.69%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSF-----SRITPEDARKIIDRFTPDQLIDILQDAVSRHVDV 60
           MD+ KKR++DENG   + +       +R++P+DARKII+RFT DQL+D+LQ+A+ RH DV
Sbjct: 1   MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60

Query: 61  LDAVRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGF 120
           L++VR  AD D+SQRKLFIRGL+ DT+TEGLRSLFS+YG+LEEA+VI+DKVTGKSKGYGF
Sbjct: 61  LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120

Query: 121 VTFKHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPA 180
           VTF HVDG++LALKEPSK IDGRVTVTQLAA G  G  S  AD+S+RKIYVANVP DMPA
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCK 240
           D+LL HF  YG++EEGPLGFDK TGK RG+ALFVYK AEGAQAAL DP+K IDG+ L+CK
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCK 240

Query: 241 YANDGKK-GKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGF 300
            A DGKK GKP  G    Q  G+G G++HG+GM M  P+      G YG  GG+ +YGG+
Sbjct: 241 LAVDGKKGGKP--GMPQAQDGGSGHGHVHGEGMGMVRPA------GPYGAAGGISAYGGY 300

Query: 301 SGGPQGAQPLGH-HPLNSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGP-GSSIYG 360
           SGGP    P  H +  +SSMG G              S GYGG  + GGYGGP G+ +YG
Sbjct: 301 SGGP----PAHHMNSTHSSMGVG--------------SAGYGG--HYGGYGGPGGTGVYG 360

Query: 361 GMGSVGGGLGSSGGGLGGAGGVSSLYRLSQSSVGMP-SGGYPDSGHYSSMSSASGHPNHH 420
           G+          GGG GG G  S  YR+  SS  MP  GGYP+SGHY  +SS++G+P  H
Sbjct: 361 GL----------GGGYGGPGTGSGQYRMPPSS--MPGGGGYPESGHY-GLSSSAGYPGQH 404

Query: 421 HQQAGASPSPRVPPGGLYPNMPPYY 437
           HQ  G SP PRVP GG+YPN PP Y
Sbjct: 421 HQAVGTSPVPRVPHGGMYPNGPPNY 404

[Close]

BLAST of CmoCh16G004540 vs. TAIR10
Match: AT2G41060.1 (AT2G41060.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-40
Identity = 133/386 (34.46%), Postives = 188/386 (48.70%), Query Frame = 1


Query: 27  EDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLFIRGLSCDTSTEGL 86
           E    +++ F+ DQL+ +L++A  RH DV + +R +AD D+  RK+F+ GL  DT  + L
Sbjct: 85  EPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSL 144

Query: 87  RSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSKTIDGRVTVTQLAA 146
              F  YGE+E+   ++DKV+G+SKGYGF+ FK   G+  ALK+P K I  R+T  QLA+
Sbjct: 145 IDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLAS 204

Query: 147 VG--------VSGQSSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEEGPLGFDKQ 206
           +G           Q  N  ++  RKIYV+NV  D+   KLL  FS +GEIEEGPLG DK 
Sbjct: 205 IGPVQGNPVVAPAQHFNPENVQ-RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKA 264

Query: 207 TGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYANDGKKGKPGGGTDGIQTTGAG 266
           TG+ +G+ALFVY+  E A+ AL +P KT +G  L C  ANDG K                
Sbjct: 265 TGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPK--------------QV 324

Query: 267 QGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQGAQPLGHHPLNSSMGPGIS 326
           + + H                  YG PGG G +   +G  Q  Q         +  P I 
Sbjct: 325 KQHQHNHNSHNQNSRYQRNDNNGYGAPGGHGHF--IAGNNQAVQ---------AFNPAIG 384

Query: 327 SVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVGGGLGSSGG-------GLGGA 386
              +  L+SQG+  G          G  G++  G +G +  G G+          G G  
Sbjct: 385 QALTALLASQGAGLGLNQAFGQALLGTLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQ 444

Query: 387 GGVSSLYRLSQSSVGMPSGGYPDSGH 398
            G    Y+  Q   G    G   +G+
Sbjct: 445 AGYQGGYQTQQPGQGGAGRGQHGAGY 444

[Close]

BLAST of CmoCh16G004540 vs. TAIR10
Match: AT3G56860.3 (AT3G56860.3 UBP1-associated protein 2A)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-38
Identity = 139/402 (34.58%), Postives = 196/402 (48.76%), Query Frame = 1


Query: 27  EDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLFIRGLSCDTSTEGL 86
           E  + +++ F+ +Q++ +L++A  +HVDV + +R +AD D   RK+F+ GL  DT TE L
Sbjct: 97  EPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETL 156

Query: 87  RSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSKTIDGRVTVTQL-- 146
              F  YGE+E+   + DK++GKSKGYGF+ +K   G+  ALK+P K I  R+T  QL  
Sbjct: 157 IEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLAS 216

Query: 147 ------------AAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEEGP 206
                       AAV    Q SN ++ + +KIYV+NV  ++   KLL  FS +GEIEEGP
Sbjct: 217 KGPVFGGAPIAAAAVSAPAQHSN-SEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGP 276

Query: 207 LGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYANDGKKGKPGGGTDGI 266
           LG DK TG+ +G+ LFVYK +E A+ AL +P KT +G  L C+ A DG   KPG      
Sbjct: 277 LGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGP--KPG------ 336

Query: 267 QTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQGAQPLGHHPLNSS 326
                 Q   H +      P         YG PGG G     +G P G        +N +
Sbjct: 337 -----KQQQHHHNPHAYNNPRYQRNDNNGYGPPGGHGHL--MAGNPAGMGGPTAQVINPA 396

Query: 327 MGPGIS--------------SVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVG 386
           +G  ++              ++G   L S G++ G      G G G P    YG      
Sbjct: 397 IGQALTALLASQGAGLAFNPAIGQALLGSLGTAAGVNP---GNGVGMPTG--YGTQAMAP 456

Query: 387 GGLGSSGGGLGGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSS 401
           G +   G   G  GG    Y+  Q   G  S G    G Y +
Sbjct: 457 GTMPGYGTQPGLQGG----YQTPQPGQGGTSRGQHGVGPYGT 473

[Close]

BLAST of CmoCh16G004540 vs. TAIR10
Match: AT2G22090.2 (AT2G22090.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 112.1 bits (279), Expect = 8.8e-25
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 1


Query: 15  DSSD-HSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLF 74
           DSSD  S +   PE+ R+++  ++ DQL+D++  A      +  AV   ADRDV+ RK+F
Sbjct: 48  DSSDSESDNEFDPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIF 107

Query: 75  IRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSK 134
           + GL  +T+ E L  +F  YGE+EE  V+IDK TGK+KG+GFV FK   G+  ALKEP K
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKK 167

Query: 135 TIDGRVTVTQLAAVG 149
            I  R    QLA++G
Sbjct: 168 RILNRTATCQLASMG 182

[Close]

BLAST of CmoCh16G004540 vs. TAIR10
Match: AT2G19380.1 (AT2G19380.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-21
Identity = 84/289 (29.07%), Postives = 138/289 (47.75%), Query Frame = 1


Query: 2   DVTKKRRMDENGVDSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRC 61
           D  KKR+ D+     SD  F     ED ++++  ++ ++L++++     +   ++ A+  
Sbjct: 342 DKEKKRKKDKKQT-KSDSDFEH-DKEDIKQLLVAYSKEELVNLIYKTAEKGSRLISAILE 401

Query: 62  IADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHV 121
            ADRD++QR +F+RG   DT+ E L++ F +YGE+EE  V++DK TG+ KGYGFV FK  
Sbjct: 402 SADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTR 461

Query: 122 DGSILALKEPSKTIDGRVTVTQLAA--VGVSGQSSNAADLSLRKIYVANVPMDMPADKLL 181
            G+  ALK P K +  R+ V  LA+   G +G+  + A+     + +    M   ++ +L
Sbjct: 462 KGAREALKRPEKRMYNRIVVCNLASEKPGKAGKEQDMAE----PVNIDLTKMANQSEAVL 521

Query: 182 AHFSL-YGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPI-KTIDGRQLSCKYA 241
               L  G + E      +QT    G  +  Y  +   Q    DP+   + G Q+     
Sbjct: 522 PGIELGRGHVLEKMHHQQQQTMDMFGQNMPFYGYSH--QFPGFDPMYGALSGNQMLAGLP 581

Query: 242 NDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPG 287
           N G                 G G +   G  + PP+ + G  GQY G G
Sbjct: 582 NYGM---------------FGSGMMTNQGSMLPPPNHL-GMAGQYFGDG 606

[Close]

BLAST of CmoCh16G004540 vs. NCBI nr
Match: gi|449438887|ref|XP_004137219.1| (PREDICTED: UBP1-associated protein 2C [Cucumis sativus])

HSP 1 Score: 759.6 bits (1960), Expect = 3.0e-216
Identity = 401/436 (91.97%), Postives = 415/436 (95.18%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVR 60
           MDVTKKRRMDENGVDSS+ SFSRITPEDARKIIDRFTPDQLIDILQDAVSRH+DVLDAVR
Sbjct: 1   MDVTKKRRMDENGVDSSESSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHLDVLDAVR 60

Query: 61  CIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKH 120
            IADRDVSQRKLFIRGLSCDTSTEGLRSLFS+YGELEEAVVIIDK TGKSKGYGFVTFKH
Sbjct: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSSYGELEEAVVIIDKATGKSKGYGFVTFKH 120

Query: 121 VDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLA 180
           VDG++LALKEPSKTIDGRVTVTQLAAVG+SGQ+SNAADLSLRKIYVANVPMDMPADKLLA
Sbjct: 121 VDGALLALKEPSKTIDGRVTVTQLAAVGISGQNSNAADLSLRKIYVANVPMDMPADKLLA 180

Query: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYANDG 240
           HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKK EGAQAALVDPIKTIDGRQLSCK+ANDG
Sbjct: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240

Query: 241 KKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQG 300
           KKGKPGGG DG QT GAGQGN+HGDGMPMAPPSA+PGSGGQYGGPGGMGSYGGFS G QG
Sbjct: 241 KKGKPGGGPDGNQTQGAGQGNVHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSGLQG 300

Query: 301 AQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVGGG 360
           AQPL HHPLNSSMGPG+SSVG QA SS GSSGGYGGGPYGGGYGGPG SIYGGMGSVGGG
Sbjct: 301 AQPLAHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPG-SIYGGMGSVGGG 360

Query: 361 LGSSGGGLGGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSSMSSASGHPNHHHQQAGASPS 420
           LG SGGGLGGAGG SSLYRL QSSVGMPSGGYPDSGHY SMSSASGHPN HHQ AG SP+
Sbjct: 361 LGGSGGGLGGAGGASSLYRLPQSSVGMPSGGYPDSGHY-SMSSASGHPNQHHQPAGTSPA 420

Query: 421 PRVPPGGLYPNMPPYY 437
           PRVPPGG+YPN+PPYY
Sbjct: 421 PRVPPGGMYPNVPPYY 434

[Close]

BLAST of CmoCh16G004540 vs. NCBI nr
Match: gi|659101647|ref|XP_008451717.1| (PREDICTED: UBP1-associated protein 2C [Cucumis melo])

HSP 1 Score: 754.2 bits (1946), Expect = 1.3e-214
Identity = 398/436 (91.28%), Postives = 414/436 (94.95%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVR 60
           MDVTKKRRMDENGVDSS++SFSRITPEDARKIIDRFTPDQLIDILQDAVSRH+DVL+AVR
Sbjct: 1   MDVTKKRRMDENGVDSSENSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHLDVLEAVR 60

Query: 61  CIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKH 120
            IADRDVSQRKLFIRGLSCDTSTEGLRSLFS+YGELEEAVVIIDK TGKSKGYGFVTFKH
Sbjct: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSSYGELEEAVVIIDKATGKSKGYGFVTFKH 120

Query: 121 VDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLA 180
           VDG++LALKEPSKTIDGRVTVTQLAAVG+SGQ+SNAADLSLRKIYVANVPMDMPADKLLA
Sbjct: 121 VDGALLALKEPSKTIDGRVTVTQLAAVGISGQNSNAADLSLRKIYVANVPMDMPADKLLA 180

Query: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYANDG 240
           HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKK EGAQAALVDPIKTIDGRQLSCK+ANDG
Sbjct: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240

Query: 241 KKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQG 300
           KKGKPGGG DG QT GAGQGN+HGDGMPMAPPSA+PGSG QYGGPGGMGSY GFS G QG
Sbjct: 241 KKGKPGGGPDGNQTQGAGQGNVHGDGMPMAPPSAMPGSGAQYGGPGGMGSYAGFSSGLQG 300

Query: 301 AQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVGGG 360
           AQPL HHPLNSSMGPG+SSVG QA SS GSSGGYGGGPYGGGYGGPG SIYGGMGSVGGG
Sbjct: 301 AQPLAHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPG-SIYGGMGSVGGG 360

Query: 361 LGSSGGGLGGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSSMSSASGHPNHHHQQAGASPS 420
           LG SGGGLGGAGG SSLYRL QSSVGMPSGGYPDSGHY SMSSASGHPN HHQ AG SP+
Sbjct: 361 LGGSGGGLGGAGGASSLYRLPQSSVGMPSGGYPDSGHY-SMSSASGHPNQHHQPAGTSPA 420

Query: 421 PRVPPGGLYPNMPPYY 437
           PRVPPGG+YPN+PPYY
Sbjct: 421 PRVPPGGMYPNVPPYY 434

[Close]

BLAST of CmoCh16G004540 vs. NCBI nr
Match: gi|1009161987|ref|XP_015899190.1| (PREDICTED: UBP1-associated protein 2C [Ziziphus jujuba])

HSP 1 Score: 584.7 bits (1506), Expect = 1.3e-163
Identity = 330/454 (72.69%), Postives = 374/454 (82.38%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVR 60
           MD+TKKR+M+ENG   +D S  ++TPEDARKII+RFTPDQLI+ILQ+AV+ H DVL+AVR
Sbjct: 1   MDLTKKRKMEENGAGDADPSVLKLTPEDARKIIERFTPDQLIEILQEAVAHHADVLEAVR 60

Query: 61  CIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKH 120
            +AD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEAVVI+DK TGKSKGYGFVTF+H
Sbjct: 61  SVADPDTSQRKLFIRGLGWDTTTEGLRALFSAYGELEEAVVILDKTTGKSKGYGFVTFRH 120

Query: 121 VDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSN---AADLSLRKIYVANVPMDMPADK 180
           VDG++LALKEPSK IDGR+TVTQLAA G SG ++N   A D+SLRKIYVANVP DMPADK
Sbjct: 121 VDGALLALKEPSKKIDGRMTVTQLAAAGNSGANTNSNAAVDVSLRKIYVANVPYDMPADK 180

Query: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCKYA 240
           LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYK  EGAQAALVDP+KTI+GRQL+CK A
Sbjct: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKTPEGAQAALVDPVKTIEGRQLTCKLA 240

Query: 241 NDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGS-GGQYGGPGGMGSYGGFSG 300
            DGKKGK G G DGIQ    G GN HGDGM +APPS++PGS GGQYGGP G+GSYGGFSG
Sbjct: 241 IDGKKGKQGSGADGIQAPVGGPGNAHGDGMGLAPPSSMPGSIGGQYGGPAGIGSYGGFSG 300

Query: 301 GPQGAQPLGHHPLNSSM-GPGISSVGSQALSSQGSSGGYG---GGPYGGGYGGPGSSIYG 360
           G QG  P+GHHPLNSS+ GPG+SSVG+QA SS G +GGYG   GGPY GGYGGPGS+ +G
Sbjct: 301 GLQG-PPMGHHPLNSSIGGPGLSSVGNQAPSSLGGAGGYGSGLGGPY-GGYGGPGSAGFG 360

Query: 361 GMGSVG----------GGLGSSGGGLGGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSSMS 420
           G+GS G          GGLG +GGG GG GG SSLYRL  SS G+PS GYPD+GHY +MS
Sbjct: 361 GLGSGGAGGGLAGSAAGGLGGAGGGAGGGGG-SSLYRLPPSSGGIPSSGYPDTGHY-NMS 420

Query: 421 SASGHPNHHHQQAGASPSPRVPPGGLYPNMPPYY 437
           S+S +   HHQ AG SP PRVPPGG+YP  PPYY
Sbjct: 421 SSSAYQGQHHQPAGTSPVPRVPPGGMYP--PPYY 448

[Close]

BLAST of CmoCh16G004540 vs. NCBI nr
Match: gi|595863695|ref|XP_007211635.1| (hypothetical protein PRUPE_ppa005857mg [Prunus persica])

HSP 1 Score: 548.1 bits (1411), Expect = 1.4e-152
Identity = 317/453 (69.98%), Postives = 358/453 (79.03%), Query Frame = 1


Query: 1   MDVTKKRRMDENGV--DSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDA 60
           MD +KKR++DENGV  D+   S  +++PEDARK+I+RF PDQLIDILQDAV+RHVDVLDA
Sbjct: 1   MDPSKKRKLDENGVVLDTDPSSIPKLSPEDARKLIERFNPDQLIDILQDAVTRHVDVLDA 60

Query: 61  VRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTF 120
           VR IAD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEA+VI+DKVTGKS+GYGFVTF
Sbjct: 61  VRSIADLDASQRKLFIRGLGWDTTTEGLRALFSAYGELEEAIVILDKVTGKSRGYGFVTF 120

Query: 121 KHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQ---SSNAADLSLRKIYVANVPMDMPA 180
           +HVDG++LALKEPSK IDGR+TVTQLAA G S     S+NAAD+SLRKIYVANVP DMPA
Sbjct: 121 RHVDGALLALKEPSKKIDGRMTVTQLAAAGNSSSNVSSNNAADVSLRKIYVANVPYDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCK 240
           DKLLAHFS YGEIEEGPLGFDKQTGKC+GYALFVYK  EGAQAALVDP+K I+GRQL+CK
Sbjct: 181 DKLLAHFSFYGEIEEGPLGFDKQTGKCKGYALFVYKTPEGAQAALVDPVKNIEGRQLTCK 240

Query: 241 YANDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFS 300
            A DGKKGKP G   G Q  G+G  N HGDGM +A PS+I    GQYGGPGG+GSYGGFS
Sbjct: 241 LAIDGKKGKPDGPGQG-QGPGSGP-NAHGDGMGLAQPSSI---AGQYGGPGGIGSYGGFS 300

Query: 301 GGPQGAQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYG---GGPYGGGYGGPGSSIYG 360
           GG QG  PLGHHPL    GPG+SSVG+Q  S  G+ GGYG   GGPYG  YGGPGS  YG
Sbjct: 301 GGHQGPPPLGHHPLG---GPGLSSVGNQVNSGLGAGGGYGAGLGGPYGN-YGGPGSVGYG 360

Query: 361 -----GMGSVGGGLG--SSGGGL--GGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSSMSS 420
                G+G  GGGLG  +SGGG   GG G  SSLY L+ SS G+PS  +P+SGHY     
Sbjct: 361 LGGTGGLGGAGGGLGGAASGGGAPGGGVGTGSSLYGLAPSSAGLPSSRFPESGHY----G 420

Query: 421 ASGHPNHHHQQAGASPSPRVPPGGLYPNMPPYY 437
            S + N HHQQAG SP PRVPPGG+YPN+PPYY
Sbjct: 421 LSSYQNQHHQQAGTSPMPRVPPGGMYPNVPPYY 440

[Close]

BLAST of CmoCh16G004540 vs. NCBI nr
Match: gi|645240221|ref|XP_008226506.1| (PREDICTED: UBP1-associated protein 2C [Prunus mume])

HSP 1 Score: 547.0 bits (1408), Expect = 3.0e-152
Identity = 317/453 (69.98%), Postives = 357/453 (78.81%), Query Frame = 1


Query: 1   MDVTKKRRMDENGV--DSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDA 60
           MD +KKR++DENGV  D+   S  +++PEDARK+I+RF PDQLIDILQDAV+RHVDVLDA
Sbjct: 1   MDPSKKRKLDENGVVLDTDPSSIPKLSPEDARKLIERFNPDQLIDILQDAVTRHVDVLDA 60

Query: 61  VRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTF 120
           VR IAD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEA+VI+DKVTGKS+GYGFVTF
Sbjct: 61  VRSIADLDASQRKLFIRGLGWDTTTEGLRALFSAYGELEEAIVILDKVTGKSRGYGFVTF 120

Query: 121 KHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQ---SSNAADLSLRKIYVANVPMDMPA 180
           +HVDG++LALKEPSK IDGR+TVTQLAA G S     S+NAAD+SLRKIYVANVP DMPA
Sbjct: 121 RHVDGALLALKEPSKKIDGRMTVTQLAAAGNSSSNVSSNNAADVSLRKIYVANVPYDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIDGRQLSCK 240
           DKLLAHFS YGEIEEGPLGFDKQTGKC+GYALFVYK  EGAQAALVDP+K I+GRQL+CK
Sbjct: 181 DKLLAHFSFYGEIEEGPLGFDKQTGKCKGYALFVYKTPEGAQAALVDPVKNIEGRQLTCK 240

Query: 241 YANDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFS 300
            A DGKKGKP G   G Q  G+G  N HGDGM MA PS+I    GQYGGPGG+GSYGGFS
Sbjct: 241 LAIDGKKGKPDGPGQG-QGPGSGP-NAHGDGMGMAQPSSI---AGQYGGPGGIGSYGGFS 300

Query: 301 GGPQGAQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYG---GGPYGGGYGGPGSSIYG 360
            G QG  PLGHHPL    GPG+SSVG+Q  S  G+ GGYG   GGPYG  YGGPGS  YG
Sbjct: 301 SGHQGPPPLGHHPLG---GPGLSSVGNQVNSGLGAGGGYGAGLGGPYGN-YGGPGSVGYG 360

Query: 361 -----GMGSVGGGLG--SSGGGL--GGAGGVSSLYRLSQSSVGMPSGGYPDSGHYSSMSS 420
                G+G  GGGLG  +SGGG   GG G  SSLY L+ SS G+PS  +P+SGHY     
Sbjct: 361 LGGAGGLGGAGGGLGGAASGGGAPGGGVGTGSSLYGLAPSSAGLPSSRFPESGHY----G 420

Query: 421 ASGHPNHHHQQAGASPSPRVPPGGLYPNMPPYY 437
            S + N HHQQAG SP PRVPPGG+YPN+PPYY
Sbjct: 421 LSSYQNQHHQQAGTSPMPRVPPGGMYPNVPPYY 440

The following BLAST results are available for this feature:

BLAST of CmoCh16G004540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UBA2C_ARATH	3.9e-123	59.33	UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1	[more]
UBA2B_ARATH	2.0e-39	34.46	UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1	[more]
UBA2A_ARATH	1.9e-37	34.58	UBP1-associated protein 2A OS=Arabidopsis thaliana GN=UBA2A PE=1 SV=1	[more]
UBA1A_ARATH	1.6e-23	45.19	UBP1-associated proteins 1A OS=Arabidopsis thaliana GN=UBA1A PE=1 SV=2	[more]
ROA0_HUMAN	1.5e-21	32.25	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	[more]

BLAST of CmoCh16G004540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYY6_CUCSA	2.1e-216	91.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083660 PE=4 SV=1	[more]
M5WGI4_PRUPE	9.5e-153	69.98	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005857mg PE=4 SV=1	[more]
A5ADJ5_VITVI	2.6e-142	67.47	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g01570 PE=4 SV=...	[more]
A0A067DZS6_CITSI	2.8e-136	65.78	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014397mg PE=4 SV=1	[more]
V4TWK3_9ROSI	2.4e-135	65.56	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008394mg PE=4 SV=1	[more]

BLAST of CmoCh16G004540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15010.1	2.2e-124	59.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G41060.1	1.1e-40	34.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G56860.3	1.1e-38	34.58	UBP1-associated protein 2A	[more]
AT2G22090.2	8.8e-25	45.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G19380.1	1.6e-21	29.07	RNA recognition motif (RRM)-containing protein	[more]

BLAST of CmoCh16G004540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438887\|ref\|XP_004137219.1\|	3.0e-216	91.97	PREDICTED: UBP1-associated protein 2C [Cucumis sativus]	[more]
gi\|659101647\|ref\|XP_008451717.1\|	1.3e-214	91.28	PREDICTED: UBP1-associated protein 2C [Cucumis melo]	[more]
gi\|1009161987\|ref\|XP_015899190.1\|	1.3e-163	72.69	PREDICTED: UBP1-associated protein 2C [Ziziphus jujuba]	[more]
gi\|595863695\|ref\|XP_007211635.1\|	1.4e-152	69.98	hypothetical protein PRUPE_ppa005857mg [Prunus persica]	[more]
gi\|645240221\|ref\|XP_008226506.1\|	3.0e-152	69.98	PREDICTED: UBP1-associated protein 2C [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008219	cell death
biological_process	GO:0006952	defense response
biological_process	GO:0009693	ethylene biosynthetic process
biological_process	GO:0010150	leaf senescence
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003729	mRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G004540.1	CmoCh16G004540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 164..232 score: 2.5E-8coord: 72..139 score: 3.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 71..143 score: 3.5E-17coord: 163..235 score: 7.3
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 70..138 score: 14.641coord: 162..239 score: 13
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 151..248 score: 2.3E-15coord: 64..145 score: 6.7
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 64..145 score: 5.91E-20coord: 149..264 score: 9.27
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 11..28 score: 4.3E-125coord: 67..244 score: 4.3E-125coord: 298..398 score: 4.3E-125coord: 427..434 score: 4.3E
None	No IPR available	PANTHER	PTHR24012:SF490	UBP1-ASSOCIATED PROTEIN 2C	coord: 11..28 score: 4.3E-125coord: 67..244 score: 4.3E-125coord: 298..398 score: 4.3E-125coord: 427..434 score: 4.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G004540	Cucsa.273510	Cucumber (Gy14) v1	cgycmoB0750
CmoCh16G004540	CmaCh16G004220	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G004540	CmaCh04G005670	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G004540	Cla002434	Watermelon (97103) v1	cmowmB305
CmoCh16G004540	Csa4G083660	Cucumber (Chinese Long) v2	cmocuB325
CmoCh16G004540	MELO3C016101	Melon (DHL92) v3.5.1	cmomeB294
CmoCh16G004540	ClCG07G010010	Watermelon (Charleston Gray)	cmowcgB293
CmoCh16G004540	CSPI04G08100	Wild cucumber (PI 183967)	cmocpiB332
CmoCh16G004540	Lsi04G020240	Bottle gourd (USVL1VR-Ls)	cmolsiB299
CmoCh16G004540	Lsi07G002960	Bottle gourd (USVL1VR-Ls)	cmolsiB318
CmoCh16G004540	Cp4.1LG01g01520	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G004540	MELO3C016101.2	Melon (DHL92) v3.6.1	cmomedB337
CmoCh16G004540	CsaV3_4G008320	Cucumber (Chinese Long) v3	cmocucB0388
CmoCh16G004540	Cla97C07G136700	Watermelon (97103) v2	cmowmbB335
CmoCh16G004540	Bhi09G002859	Wax gourd	cmowgoB0448
CmoCh16G004540	Bhi01G002548	Wax gourd	cmowgoB0432
CmoCh16G004540	CsGy4G007960	Cucumber (Gy14) v2	cgybcmoB467
CmoCh16G004540	Carg13169	Silver-seed gourd	carcmoB0055
CmoCh16G004540	Carg11353	Silver-seed gourd	carcmoB0898

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G004540	CmoCh04G006070	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G004540	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G004540	Cucumber (Gy14) v2	cgybcmoB470
CmoCh16G004540	Cucumber (Chinese Long) v3	cmocucB0393
CmoCh16G004540	Wax gourd	cmowgoB0433