CmoCh04G006070 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G006070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding family protein
Location	Cmo_Chr04 : 3022659 .. 3029492 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCGTCTTGGTCATCGTTCCTAGACTCGGATTAGGGTTTAGCTTCACCTTCTTGTTCTTCTTCTTCTTCTACTTCCACTCTACACTTCCAGGGACCTCCTTCTTCGTCTCATCTCCGCCATGGACGCCACCAAGAAGCGGAGGATGGAAGAAAATGGCGTCGACTCCTCTGAAAATTCTTTCTTAAAAATTACCTCCGATGATGCTCGTAAGATCATTGATCGTTTCACTCCGGACCAGCTTATCGATATTCTCCAAGATGCTGTTTCGCGTCACACGGATGTCCTTGATGCGGTTCGATCTATTGCTGACCGAGACGTCTCCCAGCGGAAGCTGTTTATTCGGGGTCTTAGTTGCGATACAAGTACAGAAGGTTTGCGCTCTCTCTTTTCCGCGTATGGGGAGCTTGAAGAAGCGGTTGTTATTATTGACAAGGCGACCGGGAAATCGAAAGGGTATGGCTTTGTGACTTTCAAGCATGTTGATGGGGCTATACTGGCTTTGAAGGAACCGAGCAAGACGATTGATGGCCGTGTTACAGTAACGCAATTGGCTGCAGTGGGAATTTCCGGGCAGAATTCGAACGCTGCGGACATGTCGTTGAGGAAAATTTATGTGGCGAATGTTCCGATGGATATGCCGGCCGATAAACTGTTGGCACACTTTTCGCTGTATGGAGAAATTGAGGAGGGACCGCTAGGATTTGATAAGCAGACGGGTAAGTGCAGAGGTTATGCTTTATTTGTGTACAAGAAGCCAGAAGGGGCACAGGCAGCTCTGGTGGATCCAATCAAGACGATTGATGGAAGGCAGTTGAGCTGTAAATTCGCTAACGATGGGAAGAAAGGGAAACCTGGTGGTGGGCAGGATGGAATTCAAACGCCGGGGGCCGGTCAAGGGAATTTGCATGGAGATGGCATGCCTATGGCTCCTCCTTCGGCAATGCCTGGTTCAGGCGGACAATATGGTGGGCCGGGAGGCATGGGGTCGTATGGAGGCTTTTCTAGTGGCGTTCAAGGGGGACAGGCACTGGGTCATCATCCGCTAAACTCCTCAATGGGGCCGGGTCTATCTTCTGTCGGTGGTCAGGCTCCATCTTCGTTGGGAAGCTCTGGCGGATATGGCGGCGGTCCATATGGTGGTGGGTACGGCGGTCCCGCGTCCTCAATTTATGGTGGTATGGGTAGTGTAGGTGGTGGTTTGGGTGGTTCTGCTGGTGGATTGGGCGGAACCGGGGGGCCATCATCTCTGTATAGGATGCCACAGAGTTCGGTGGGAATGCCTTCTGGTGGTTATCCGGATAGTGGGCATTATAGCATGTCATCAGCATCTGGGCACCCAAATCCGCTCCATCAACAGGCGGTAACATCACCGGCGCCACGTGTTCCGCCTGGAGGAATGTATCCCAGTGTGCCACCTTATTACTGAGGTATTCTCGTTTTTATTCATACTGTAAATTACTGCATGAAGTGTGATGGTATATTAGTCAAATCATACCCCATACCGTGTTCTGGTTATCCTTATTACTTCGATTTTCCCCCTCTGCGTGACGGTGTTTAATTCCAGTATGATCTTCCGTTACTAATTTTAGTTTTATCGCTATCAGCATTCGGGCTTACCGTGCACGCATGTTTTACCTGCAAATCTATGTTTTTTTGGTTATTTCACGCTTAGTGTGTTCTTTTTTCCTAGCTTGTTAAAGTTTGCTTTATAGTATCATCTGGGTCTGGCTTGTTGTCTGCGTGAATATTGTGCATCAAATAGCATGCAGTTCTCAACAAAACCATTTCTTCTGGATACTACTAATATGGACTCTCTTTACTATCTCGCCTTGTGATTTTTTTATGTCAATATCCACTCTTGATTTATGTTTTTTCTGTTTTCTTTTTAGGCGTTTCATTTTCACCTTATTCTGGACATTTTGTGCTTGTGAAAGTATTTATCTTCGTGTTGTCATTATTTGTGTTGGATTCCATCTTCATGCAGTTACACTTGTTTATGAATTATGTTGTTGTAACCTGGAACATATATGTGAATGCGGATTCAGTCCTAGAAAGTTTGAGTTTTAGCTGGCATATTTCCTACACATTGCTTTATTGTGCTTCTTCTGCTTGCCGCAAATATACACATCTAATTATCCCTTTGTTAATTCATATTAAGTTCGTTTGGGAAGTTGGTATTTTTAGAATGTTTATCTCATGTTCTAATTGTAATTTTTTGTTGTATATCTTTATTCACTGCTAAAGTTGATTATGTCTGGATTTTCTGTTCTCAAAATTGCTTAGATGTGGACCTTTGTTGTTTCATGGAGCATTTTTCTCCATTTACATTTACTAACAGAGGAAGAGAGTGTTTGTTTATCAATTGTTTCTGGACATTTAACCAAGAGGATATGGAAAATGGTAGGAGGAAGTTATTCTTTTTTCATTTGCTCCTGATGGAAATTAACCTTGCTCTCCTACTAGAAATGTCAGATTTTCTTAGAGTGTTGGTTTCATTTTCTGAGAGAAGTTGTTGAATATGTTTATTTACTGTTGAATTAGATTGTTCATCTAATTGCAGTAATCAAAATCTTGCCTTTGTTGTTTACGGGAGAATATTACATTGTTTATATGAGTGTAGGGAGTGTTAGTTGTATTATCTAGTTTATTTGAATATTGTTTAGTCATCCTCTAAGAAGAAGCACGGATATAGATACAAGACATGGATACGATGCTACACGTCCTTTTTTAAAAAAAAAATTGGACACACACACACGTTTACGAAAATATGCATCACTTTTATAATTAAGAGAGAAATTCAAAGTTAAACATTTATATGTTTAAAAATATGAGCTTGATGTATTTTCCTCTATAATTTTTCATGTGTATATGCTAGACTTAACAAGTCTTTGATACATGTCTAACAAATGTTTGACCTGTATTGACTTTGCACCAAGTGTCCAACACATGTCCAACAAAGGTTAGTGTGTCTGACATGGGTTGGGCAAACATGCTAGGCAAAAAAAGGTGCAAGGGTCCGACTTTCTAGACCTAATGGAAGCTCATTCAGATCCTAAGCAAATAGAAAGCTAAAAAAGGTGCAAGGTTAGTGTGTCTGACATGGGTTGGGCAAACATGCTAGGCAAAAAAAAAAAAGGTGCACCAAGTATGAAACAAACAAAACAAAGATCTTATAAGAAACAATGGAAGCTCATTCAGATCCTAAGCAAATAGAAAGCTCATTAAGATCCTAAATAGTCACAAATACAGAATTGAGTTCTTAAATACAATAATTCTCGAAGCAAAATAAATAAGCATAAAGACTCTAAACCCTTGACAAGCTAACGAGTTTTCTTGTCACACCCTCGGTACACCTTTTGCCTTTACTTGAAATAAAAAGGTTTATGAATTCATAAGATGAAGGAATTTATAACTGTTCAAAATTTGACCAATTTCCATAGACACAAATGAGTAATTGTCCTTACAATTTTCCTAGAGAACCCTAATTATCTAAGCTGTTAGTTGATGATCAATTTCCATAAACAAAGACTGAATAGCCTGTAAGCTTATGAATAAAATCCTTTGACCTTCGTGGAATAAGTCCCATGCATACAAGTGAGCAAATGCGTGAAGTTATATCACTCATCTTATATCGATCAACACATGCAAGATCTTATAGATGTTTCAAAACATTATTCCCATGTATGCACAATCAACACAACAATCACAGAACAAATAATGCATGCATACGTAACATCTTAAAACAAGAATGTTATCCAATAAGAAAATCACTTCAAATGATTCCTAGCAGCAACACAAATTTTCCCATGAGTTGCACAAAGTTTAGTCCAATCCTACAACAAAATCTTAATTGTAACCCTGAAACCTAGAGAACAAATACTATTGTAACATCACAAACCATAATCAAGGGCTTAGAATATTTAACGAAGATAGTTCTTATCTGAAGATTGGTTTCTCGTCCCCAACGATCAATTAATTCCCAACACAAGAGACCAAGACTTATCCCCAATGTTTGCTGCGTACAAATATTGAGCCCTAACACACAAATCTCATTCAAAATGCCCAATAGTGGCCCTAAACCAGAAAAAAACTGATGTAAAATCATCAAACTGAGTGAAAGAAAGTGAAAACTGCAACTTGGATTGAAGAAGCGATTGAACCAAAGGAAAATAGTTAGACAGGTGCAAACCAAATAAAATTGAAGTTTGGAAGCATCTTGAGCCAATGCTCTCTTAGAGCAAACCTATCTTGGCCACTCACCCTCGTCTCTGATGTAGCGATGGTGGTAATGGCCACCACTTCGAAAGACACGTGTGTGAGACGATGTAAAGCGACAATGAAGAAAAACTTGATCGTGAGGTAACGAAATTGATTGATAACCACAAAAAGAAATTGAAAAAAGAATTTATTGTTGTCAATCCTCATTTGCTACCACTGGCGACGACGGGAAATGTTGTGGATGTTTGGGCAAAAGTAGTGAAACCCACAAGTGGCAGGGCGATAAGTAAACAAAAATTGTAAGGACTGTGAACAAAATTGAGGACTAGGACAATCAGTGTGTAGAAGCCAATTCTGGAGTTGGACTTGTGAACCAAAGCCAATAATGCAATCACCAAAGTCGATGATGCAAGTTTGGCTTTTCCTTGGGTCTTGTGGCTTAAATAAATATAATTAGATTTTTTTTTTTTATAAAAAAAATCCCAGTTGTTACAATAAGTGTCCTGTTCTCTTAAGCTCTTGGCCTGTGACTTGGTTCTCTTGTACCTTTTTTGTTGATGTAAGATGTATCTTGGATTACCTTTGTCAACTTATCGAGTGTACCTGTAGGAAATATGTTGGTTTACCCTTCTTTTGGGTATTTCATCTGTAAACATGCGTATTGGTCCACTATACAATATCAATGCTAACACACACCTTTATAATTTTTTATTGTTAAAAAAATGCTTTATAATTTCAGAGTTTTGACTAAATCTGCTATATTTCCCTTTGAAATATTTATCTTATTATTAGTGGTTTTCTAGTAGGGTAAAAGATTGTTTTAACATAATGTTTGAATTGTTTGCTATCGCTTAGCATGACCTTTTCTTGTATGATTGAGTGTAGTGATGAATTTAGTTAAATGGGTTTCTGATTCAGGTTATGATGTTTGTTGGGCGCAGATGCTTTATGTGCTCTGGTGATTGCGTTGATTGCAGACTGTAACTCTGGTTTGATGAATGCATTAGCTTTGCTTGTGGCCTCTGCTGTTTAACTGCACCTTTGAGTTGTTCATTGAGAATTATTGGTAGTCAAAGAGACAGAGTTAGAAAGTTAGATAATTTTTGTACTCTACCCAATGACTTAATTGTGCTATTTGACTTTTCTACTAGTAGTAAATTTAGTATTATATGAGTACTATTCGCTCTAGTTACTGTAGTTTTTCTGCTTTCTGTTGCTTTCAAATTATGTGGACAATCTTTTCCCTCCCGACTACTCATTACGTGGCTCTGCCATCTTGATTTGAGTATGTCAACCTGCTTGAAAGACCTTGTATTTTCTTTGTCATTGCTTTTCTGCGAGGAACTTTTGAATCCTTTGCAGTTGTTGGTATCAAGTGCTTTCTACTTCACTTCTCTGCCATGCCTTTGAATTGATTTCCTTTTATCGCTACTCTCTGTTCTTTGTGAATGGTCGATGAAAGTTGGAAAAAATCCATGGTGATTCTGTTATTTTGTCTGTCCATGCTGTATGGATCCACTTCTATTGCTGCTCTGCTGTGTGCATCTGTTTTGTCGAAGGTTGTTGGAAGCACAAGCTTTGTCAATCTTGGATTTGAATGATACTTGAAGCTCTTTTTGTATCTCATCTTTAATGGTTTAAGGGTTTTTGATTTATGGATTGTAGAGATGATATTCTCGTCTTTGAGCTGTGACTTTCGTTGTATCTCATCGATGATTTACTGCATAATGTGCTGGATGCTTCAACCAAATACATGTGTGCACGGTGATGGATTGAGTTCTTTTTCTGTACAATCAATTGCTTGCTCAATTTTCTGTTTGGTAGTTATTATTACCGACGTTGGCTTGTTTGAATGGTGAGTGCGTGTTCCACGGAGCCAATTGCTTGCTTAATCTTCCTCGAGTTCATGTAATTTTCATTAACTTTTGAAGCAAGGAATGGGGTTGTGAGATGAAATTGAATCTTGTTTTGTTTCCCTTCATTTTGTGAGTTGTGTTTTGTGGGGGATGAACTTGTTATATAGTTCATATTTAGCTGCTTTTGTTTTAGTTGTTAAAGATGTGTTTGGTTCACAAATTTGGGAAGTTCATTACTTGTAAATTGGCTTGGTTTGTGTTATAATGGATTCGTAAGAGCTTGTTTATAGAAATTTTTGTCTTGTTTGCAACTTGTTAGATGGATTTTAGTAACTAGTGGAGGTGGTGTTCTCAATGTTCTCAACTTGTGAGAGAGATTAGCTGTGTGTTTTGTCCTATAAATAAATCTGAATATCTGGCTTCTAAATCTTTATCAGCTTCTGTCTCTCACACACACAATATTTGGCCCTTTTTTTTTGTTTTTTTGGTGTGTGTATGGTGGTATATGAAATGGCAAATGGGCATCAAAACCATCCCACTGAGCCCCTGCTTGGAGGACTTAAAATCGTTCAAGAAGACTTGAGGCACAACCAATTGAACTATTGAAGCCCTTTTAACTTCGAAATTATGTAAGTTTATATCCATTTTGATTCTTGTACTTGACGATTATTCGTCTCCCTAATGACTCGGTTTCGAATGTTTAATATTCAAGTTCGAAATCAATAGTAATATTTTTGCAATTTATTATAATGAAAAAG

mRNA sequence

CTTCGTCTTGGTCATCGTTCCTAGACTCGGATTAGGGTTTAGCTTCACCTTCTTGTTCTTCTTCTTCTTCTACTTCCACTCTACACTTCCAGGGACCTCCTTCTTCGTCTCATCTCCGCCATGGACGCCACCAAGAAGCGGAGGATGGAAGAAAATGGCGTCGACTCCTCTGAAAATTCTTTCTTAAAAATTACCTCCGATGATGCTCGTAAGATCATTGATCGTTTCACTCCGGACCAGCTTATCGATATTCTCCAAGATGCTGTTTCGCGTCACACGGATGTCCTTGATGCGGTTCGATCTATTGCTGACCGAGACGTCTCCCAGCGGAAGCTGTTTATTCGGGGTCTTAGTTGCGATACAAGTACAGAAGGTTTGCGCTCTCTCTTTTCCGCGTATGGGGAGCTTGAAGAAGCGGTTGTTATTATTGACAAGGCGACCGGGAAATCGAAAGGGTATGGCTTTGTGACTTTCAAGCATGTTGATGGGGCTATACTGGCTTTGAAGGAACCGAGCAAGACGATTGATGGCCGTGTTACAGTAACGCAATTGGCTGCAGTGGGAATTTCCGGGCAGAATTCGAACGCTGCGGACATGTCGTTGAGGAAAATTTATGTGGCGAATGTTCCGATGGATATGCCGGCCGATAAACTGTTGGCACACTTTTCGCTGTATGGAGAAATTGAGGAGGGACCGCTAGGATTTGATAAGCAGACGGGTAAGTGCAGAGGTTATGCTTTATTTGTGTACAAGAAGCCAGAAGGGGCACAGGCAGCTCTGGTGGATCCAATCAAGACGATTGATGGAAGGCAGTTGAGCTGTAAATTCGCTAACGATGGGAAGAAAGGGAAACCTGGTGGTGGGCAGGATGGAATTCAAACGCCGGGGGCCGGTCAAGGGAATTTGCATGGAGATGGCATGCCTATGGCTCCTCCTTCGGCAATGCCTGGTTCAGGCGGACAATATGGTGGGCCGGGAGGCATGGGGTCGTATGGAGGCTTTTCTAGTGGCGTTCAAGGGGGACAGGCACTGGGTCATCATCCGCTAAACTCCTCAATGGGGCCGGGTCTATCTTCTGTCGGTGGTCAGGCTCCATCTTCGTTGGGAAGCTCTGGCGGATATGGCGGCGGTCCATATGGTGGTGGGTACGGCGGTCCCGCGTCCTCAATTTATGGTGGTATGGGTAGTGTAGGTGGTGGTTTGGGTGGTTCTGCTGGTGGATTGGGCGGAACCGGGGGGCCATCATCTCTGTATAGGATGCCACAGAGTTCGGTGGGAATGCCTTCTGGTGGTTATCCGGATAGTGGGCATTATAGCATGTCATCAGCATCTGGGCACCCAAATCCGCTCCATCAACAGGCGGTAACATCACCGGCGCCACGTGTTCCGCCTGGAGGAATGTATCCCAGTGTGCCACCTTATTACTGAGTTATGATGTTTGTTGGGCGCAGATGCTTTATGTGCTCTGGTGATTGCGTTGATTGCAGACTGTAACTCTGGTTTGATGAATGCATTAGCTTTGCTTGTGGCCTCTGCTGTTTAACTGCACCTTTGAGTTGTTCATTGAGAATTATTGGTAGTCAAAGAGACAGAGTTAGAAAGTTAGATAATTTTTGTACTCTACCCAATGACTTAATTGTGCTATTTGACTTTTCTACTAGTAGTAAATTTAGTATTATATGAGTACTATTCGCTCTAGTTACTGTAGTTTTTCTGCTTTCTGTTGCTTTCAAATTATGTGGACAATCTTTTCCCTCCCGACTACTCATTACGTGGCTCTGCCATCTTGATTTGAGTATGTCAACCTGCTTGAAAGACCTTGTATTTTCTTTGTCATTGCTTTTCTGCGAGGAACTTTTGAATCCTTTGCAGTTGTTGGTATCAAGTGCTTTCTACTTCACTTCTCTGCCATGCCTTTGAATTGATTTCCTTTTATCGCTACTCTCTGTTCTTTGTGAATGGTCGATGAAAGTTGGAAAAAATCCATGGTGATTCTGTTATTTTGTCTGTCCATGCTGTATGGATCCACTTCTATTGCTGCTCTGCTGTGTGCATCTGTTTTGTCGAAGGTTGTTGGAAGCACAAGCTTTGTCAATCTTGGATTTGAATGATACTTGAAGCTCTTTTTGTATCTCATCTTTAATGGTTTAAGGGTTTTTGATTTATGGATTGTAGAGATGATATTCTCGTCTTTGAGCTGTGACTTTCGTTGTATCTCATCGATGATTTACTGCATAATGTGCTGGATGCTTCAACCAAATACATGTGTGCACGGTGATGGATTGAGTTCTTTTTCTGTACAATCAATTGCTTGCTCAATTTTCTGTTTGGTAGTTATTATTACCGACGTTGGCTTGTTTGAATGGTGAGTGCGTGTTCCACGGAGCCAATTGCTTGCTTAATCTTCCTCGAGTTCATGTAATTTTCATTAACTTTTGAAGCAAGGAATGGGGTTGTGAGATGAAATTGAATCTTGTTTTGTTTCCCTTCATTTTGTGAGTTGTGTTTTGTGGGGGATGAACTTGTTATATAGTTCATATTTAGCTGCTTTTGTTTTAGTTGTTAAAGATGTGTTTGGTTCACAAATTTGGGAAGTTCATTACTTGTAAATTGGCTTGGTTTGTGTTATAATGGATTCGTAAGAGCTTGTTTATAGAAATTTTTGTCTTGTTTGCAACTTGTTAGATGGATTTTAGTAACTAGTGGAGGTGGTGTTCTCAATGTTCTCAACTTGTGAGAGAGATTAGCTGTGTGTTTTGTCCTATAAATAAATCTGAATATCTGGCTTCTAAATCTTTATCAGCTTCTGTCTCTCACACACACAATATTTGGCCCTTTTTTTTTGTTTTTTTGGTGTGTGTATGGTGGTATATGAAATGGCAAATGGGCATCAAAACCATCCCACTGAGCCCCTGCTTGGAGGACTTAAAATCGTTCAAGAAGACTTGAGGCACAACCAATTGAACTATTGAAGCCCTTTTAACTTCGAAATTATGTAAGTTTATATCCATTTTGATTCTTGTACTTGACGATTATTCGTCTCCCTAATGACTCGGTTTCGAATGTTTAATATTCAAGTTCGAAATCAATAGTAATATTTTTGCAATTTATTATAATGAAAAAG

Coding sequence (CDS)

ATGGACGCCACCAAGAAGCGGAGGATGGAAGAAAATGGCGTCGACTCCTCTGAAAATTCTTTCTTAAAAATTACCTCCGATGATGCTCGTAAGATCATTGATCGTTTCACTCCGGACCAGCTTATCGATATTCTCCAAGATGCTGTTTCGCGTCACACGGATGTCCTTGATGCGGTTCGATCTATTGCTGACCGAGACGTCTCCCAGCGGAAGCTGTTTATTCGGGGTCTTAGTTGCGATACAAGTACAGAAGGTTTGCGCTCTCTCTTTTCCGCGTATGGGGAGCTTGAAGAAGCGGTTGTTATTATTGACAAGGCGACCGGGAAATCGAAAGGGTATGGCTTTGTGACTTTCAAGCATGTTGATGGGGCTATACTGGCTTTGAAGGAACCGAGCAAGACGATTGATGGCCGTGTTACAGTAACGCAATTGGCTGCAGTGGGAATTTCCGGGCAGAATTCGAACGCTGCGGACATGTCGTTGAGGAAAATTTATGTGGCGAATGTTCCGATGGATATGCCGGCCGATAAACTGTTGGCACACTTTTCGCTGTATGGAGAAATTGAGGAGGGACCGCTAGGATTTGATAAGCAGACGGGTAAGTGCAGAGGTTATGCTTTATTTGTGTACAAGAAGCCAGAAGGGGCACAGGCAGCTCTGGTGGATCCAATCAAGACGATTGATGGAAGGCAGTTGAGCTGTAAATTCGCTAACGATGGGAAGAAAGGGAAACCTGGTGGTGGGCAGGATGGAATTCAAACGCCGGGGGCCGGTCAAGGGAATTTGCATGGAGATGGCATGCCTATGGCTCCTCCTTCGGCAATGCCTGGTTCAGGCGGACAATATGGTGGGCCGGGAGGCATGGGGTCGTATGGAGGCTTTTCTAGTGGCGTTCAAGGGGGACAGGCACTGGGTCATCATCCGCTAAACTCCTCAATGGGGCCGGGTCTATCTTCTGTCGGTGGTCAGGCTCCATCTTCGTTGGGAAGCTCTGGCGGATATGGCGGCGGTCCATATGGTGGTGGGTACGGCGGTCCCGCGTCCTCAATTTATGGTGGTATGGGTAGTGTAGGTGGTGGTTTGGGTGGTTCTGCTGGTGGATTGGGCGGAACCGGGGGGCCATCATCTCTGTATAGGATGCCACAGAGTTCGGTGGGAATGCCTTCTGGTGGTTATCCGGATAGTGGGCATTATAGCATGTCATCAGCATCTGGGCACCCAAATCCGCTCCATCAACAGGCGGTAACATCACCGGCGCCACGTGTTCCGCCTGGAGGAATGTATCCCAGTGTGCCACCTTATTACTGA

Homology

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BLAST of CmoCh04G006070 vs. Swiss-Prot
Match: UBA2C_ARATH (UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 4.0e-120
Identity = 259/443 (58.47%), Postives = 308/443 (69.53%), Query Frame = 1


Query: 1   MDATKKRRMEENGVDSSENSF-----LKITSDDARKIIDRFTPDQLIDILQDAVSRHTDV 60
           MD  KKR+++ENG   + N        +++  DARKII+RFT DQL+D+LQ+A+ RH DV
Sbjct: 1   MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60

Query: 61  LDAVRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGF 120
           L++VR  AD D+SQRKLFIRGL+ DT+TEGLRSLFS+YG+LEEA+VI+DK TGKSKGYGF
Sbjct: 61  LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120

Query: 121 VTFKHVDGAILALKEPSKTIDGRVTVTQLAAVGISGQNSNAADMSLRKIYVANVPMDMPA 180
           VTF HVDGA+LALKEPSK IDGRVTVTQLAA G  G  S  AD+S+RKIYVANVP DMPA
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCK 240
           D+LL HF  YG++EEGPLGFDK TGK RG+ALFVYK  EGAQAAL DP+K IDG+ L+CK
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCK 240

Query: 241 FANDGKKG-KPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGF 300
            A DGKKG KPG  Q   Q  G+G G++HG+GM M  P+      G YG  GG+ +YGG+
Sbjct: 241 LAVDGKKGGKPGMPQ--AQDGGSGHGHVHGEGMGMVRPA------GPYGAAGGISAYGGY 300

Query: 301 SSGVQGGQALGHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPASS-IYGG 360
           S G         H   SSMG G              S GYGG  + GGYGGP  + +YGG
Sbjct: 301 SGGPPAHHMNSTH---SSMGVG--------------SAGYGG--HYGGYGGPGGTGVYGG 360

Query: 361 MGSVGGGLGGSAGGLGGTGGPSSLYRMPQSSVGMPSGG-YPDSGHYSMSSASGHPNPLHQ 420
           +G          GG GG G  S  YRMP SS  MP GG YP+SGHY +SS++G+P   HQ
Sbjct: 361 LG----------GGYGGPGTGSGQYRMPPSS--MPGGGGYPESGHYGLSSSAGYPGQHHQ 404

Query: 421 QAVTSPAPRVPPGGMYPSVPPYY 436
              TSP PRVP GGMYP+ PP Y
Sbjct: 421 AVGTSPVPRVPHGGMYPNGPPNY 404

[Close]

BLAST of CmoCh04G006070 vs. Swiss-Prot
Match: UBA2B_ARATH (UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.8e-43
Identity = 140/362 (38.67%), Postives = 189/362 (52.21%), Query Frame = 1


Query: 32  IIDRFTPDQLIDILQDAVSRHTDVLDAVRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFS 91
           +++ F+ DQL+ +L++A  RH DV + +R +AD D+  RK+F+ GL  DT  + L   F 
Sbjct: 90  LLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSLIDAFK 149

Query: 92  AYGELEEAVVIIDKATGKSKGYGFVTFKHVDGAILALKEPSKTIDGRVTVTQLAAVG--- 151
            YGE+E+   ++DK +G+SKGYGF+ FK   GA  ALK+P K I  R+T  QLA++G   
Sbjct: 150 QYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQ 209

Query: 152 -----ISGQNSNAADMSLRKIYVANVPMDMPADKLLAHFSLYGEIEEGPLGFDKQTGKCR 211
                   Q+ N  ++  RKIYV+NV  D+   KLL  FS +GEIEEGPLG DK TG+ +
Sbjct: 210 GNPVVAPAQHFNPENVQ-RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPK 269

Query: 212 GYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDGKKGKPGGGQDGIQTPGAGQGNLH 271
           G+ALFVY+  E A+ AL +P KT +G  L C  ANDG              P   + + H
Sbjct: 270 GFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDG--------------PKQVKQHQH 329

Query: 272 GDGMPMAPPSAMPGSGGQYGGPGGMGSY-GGFSSGVQG-----GQALGHHPLNSSMGPGL 331
                             YG PGG G +  G +  VQ      GQAL     +   G GL
Sbjct: 330 NHNSHNQNSRYQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPAIGQALTALLASQGAGLGL 389

Query: 332 SSVGGQAPSSLGSSGGYGGGPYGG---GYGGPAS---SIYGGMGSVGGGLGGSAGGLGGT 374
           +   GQA   LG+ G    G  GG   GYG  A+    +Y G G+  G  GG      G 
Sbjct: 390 NQAFGQA--LLGTLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQAGYQGGYQTQQPGQ 434

[Close]

BLAST of CmoCh04G006070 vs. Swiss-Prot
Match: UBA2A_ARATH (UBP1-associated protein 2A OS=Arabidopsis thaliana GN=UBA2A PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.1e-40
Identity = 156/417 (37.41%), Postives = 202/417 (48.44%), Query Frame = 1


Query: 2   DATKKRRMEENGVDSSENSFLKITSDDARKI---IDRFTPDQLIDILQDAVSRHTDVLDA 61
           D T   R+E      S N       DD   I   ++ F+ +Q++ +L++A  +H DV + 
Sbjct: 73  DQTDGNRIEAAATSGSGNQ----EDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANR 132

Query: 62  VRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTF 121
           +R +AD D   RK+F+ GL  DT TE L   F  YGE+E+   + DK +GKSKGYGF+ +
Sbjct: 133 IREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 192

Query: 122 KHVDGAILALKEPSKTIDGRVTVTQL--------------AAVGISGQNSNAADMSLRKI 181
           K   GA  ALK+P K I  R+T  QL              AAV    Q+SN ++ + +KI
Sbjct: 193 KSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSN-SEHTQKKI 252

Query: 182 YVANVPMDMPADKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPI 241
           YV+NV  ++   KLL  FS +GEIEEGPLG DK TG+ +G+ LFVYK  E A+ AL +P 
Sbjct: 253 YVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPH 312

Query: 242 KTIDGRQLSCKFANDGKKGKPGGGQDGIQTPGAGQGNLH--GDGMPMAPPSAMPGSGG-Q 301
           KT +G  L C+ A DG   KPG  Q     P A     +   D     PP    G G   
Sbjct: 313 KTFEGHILHCQKAIDGP--KPGKQQQHHHNPHAYNNPRYQRNDNNGYGPPG---GHGHLM 372

Query: 302 YGGPGGMGSYGGFSSGVQGGQALGHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGG 361
            G P GMG           GQAL    L +S G GL+       + LGS G   G   G 
Sbjct: 373 AGNPAGMGGPTAQVINPAIGQAL--TALLASQGAGLAFNPAIGQALLGSLGTAAGVNPGN 432

Query: 362 GYGGPASSIYGGMGSVGGGLGGSAGGLGGTGGPSSLYRMPQSSVGMPSGGYPDSGHY 399
           G G P    YG      G + G     G  GG    Y+ PQ   G  S G    G Y
Sbjct: 433 GVGMPTG--YGTQAMAPGTMPGYGTQPGLQGG----YQTPQPGQGGTSRGQHGVGPY 471

[Close]

BLAST of CmoCh04G006070 vs. Swiss-Prot
Match: UBA1A_ARATH (UBP1-associated proteins 1A OS=Arabidopsis thaliana GN=UBA1A PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 3.5e-23
Identity = 59/132 (44.70%), Postives = 84/132 (63.64%), Query Frame = 1


Query: 17  SENSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDAVRSIADRDVSQRKLFIRG 76
           S+N F     ++ R+++  ++ DQL+D++  A    + +  AV   ADRDV+ RK+F+ G
Sbjct: 54  SDNEF---DPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYG 113

Query: 77  LSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTFKHVDGAILALKEPSKTID 136
           L  +T+ E L  +F  YGE+EE  V+IDKATGK+KG+GFV FK   GA  ALKEP K I 
Sbjct: 114 LPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL 173

Query: 137 GRVTVTQLAAVG 149
            R    QLA++G
Sbjct: 174 NRTATCQLASMG 182

[Close]

BLAST of CmoCh04G006070 vs. Swiss-Prot
Match: ROA3_RAT (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.5e-23
Identity = 120/348 (34.48%), Postives = 157/348 (45.11%), Query Frame = 1


Query: 70  RKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTFKHVDGAILALK 129
           RKLFI GLS +T+ + LR  F  +G L + VV+ D  T +S+G+GFVT+  V+    A+ 
Sbjct: 35  RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94

Query: 130 EPSKTIDGRVTVTQLAAVGISGQNSNAADMSLRKIYVANVPMDMPADKLLAHFSLYGEIE 189
                +DGRV V    AV         A ++++KI+V  +  D     L  +F  YG+IE
Sbjct: 95  ARPHKVDGRV-VEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIE 154

Query: 190 EGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDGKKGKPGGGQ 249
              +  D+Q+GK RG+A   +   +     +V    TI+G     K A   ++ +  G Q
Sbjct: 155 TIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQ 214

Query: 250 DGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSGVQGGQALGHHPL 309
            G    G G GN  G G          G GG +GG GG G  GG S G  GG   G++  
Sbjct: 215 RG---RGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGF 274

Query: 310 -----NSSMGPGLSSVGGQAPSSLGSSGGYG--GGPYGGGYGGPASSIYGGMGSVGGGLG 369
                N   GPG SS GG      G   GYG  GG YGGG GG     Y   G+ GGG  
Sbjct: 275 GGDGGNYGGGPGYSSRGGYG----GGGPGYGNQGGGYGGGGGGYDG--YNEGGNFGGGNY 334

Query: 370 GSAGGLGGTGGPSSLYR-----MPQSSVGMPSGGYPDSGHYSMSSASG 406
           G  G     G  S   +     M   S G  S G P  G Y     SG
Sbjct: 335 GGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSG 372

[Close]

BLAST of CmoCh04G006070 vs. TrEMBL
Match: A0A0A0KYY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083660 PE=4 SV=1)

HSP 1 Score: 770.8 bits (1989), Expect = 9.0e-220
Identity = 405/435 (93.10%), Postives = 416/435 (95.63%), Query Frame = 1


Query: 1   MDATKKRRMEENGVDSSENSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDAVR 60
           MD TKKRRM+ENGVDSSE+SF +IT +DARKIIDRFTPDQLIDILQDAVSRH DVLDAVR
Sbjct: 1   MDVTKKRRMDENGVDSSESSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHLDVLDAVR 60

Query: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTFKH 120
           SIADRDVSQRKLFIRGLSCDTSTEGLRSLFS+YGELEEAVVIIDKATGKSKGYGFVTFKH
Sbjct: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSSYGELEEAVVIIDKATGKSKGYGFVTFKH 120

Query: 121 VDGAILALKEPSKTIDGRVTVTQLAAVGISGQNSNAADMSLRKIYVANVPMDMPADKLLA 180
           VDGA+LALKEPSKTIDGRVTVTQLAAVGISGQNSNAAD+SLRKIYVANVPMDMPADKLLA
Sbjct: 121 VDGALLALKEPSKTIDGRVTVTQLAAVGISGQNSNAADLSLRKIYVANVPMDMPADKLLA 180

Query: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240
           HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG
Sbjct: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240

Query: 241 KKGKPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSGVQG 300
           KKGKPGGG DG QT GAGQGN+HGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSG+QG
Sbjct: 241 KKGKPGGGPDGNQTQGAGQGNVHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSGLQG 300

Query: 301 GQALGHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPASSIYGGMGSVGGG 360
            Q L HHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGP  SIYGGMGSVGGG
Sbjct: 301 AQPLAHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGP-GSIYGGMGSVGGG 360

Query: 361 LGGSAGGLGGTGGPSSLYRMPQSSVGMPSGGYPDSGHYSMSSASGHPNPLHQQAVTSPAP 420
           LGGS GGLGG GG SSLYR+PQSSVGMPSGGYPDSGHYSMSSASGHPN  HQ A TSPAP
Sbjct: 361 LGGSGGGLGGAGGASSLYRLPQSSVGMPSGGYPDSGHYSMSSASGHPNQHHQPAGTSPAP 420

Query: 421 RVPPGGMYPSVPPYY 436
           RVPPGGMYP+VPPYY
Sbjct: 421 RVPPGGMYPNVPPYY 434

[Close]

BLAST of CmoCh04G006070 vs. TrEMBL
Match: M5WGI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005857mg PE=4 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 6.2e-152
Identity = 314/452 (69.47%), Postives = 355/452 (78.54%), Query Frame = 1


Query: 1   MDATKKRRMEENGV--DSSENSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDA 60
           MD +KKR+++ENGV  D+  +S  K++ +DARK+I+RF PDQLIDILQDAV+RH DVLDA
Sbjct: 1   MDPSKKRKLDENGVVLDTDPSSIPKLSPEDARKLIERFNPDQLIDILQDAVTRHVDVLDA 60

Query: 61  VRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTF 120
           VRSIAD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEA+VI+DK TGKS+GYGFVTF
Sbjct: 61  VRSIADLDASQRKLFIRGLGWDTTTEGLRALFSAYGELEEAIVILDKVTGKSRGYGFVTF 120

Query: 121 KHVDGAILALKEPSKTIDGRVTVTQLAAVGISGQN---SNAADMSLRKIYVANVPMDMPA 180
           +HVDGA+LALKEPSK IDGR+TVTQLAA G S  N   +NAAD+SLRKIYVANVP DMPA
Sbjct: 121 RHVDGALLALKEPSKKIDGRMTVTQLAAAGNSSSNVSSNNAADVSLRKIYVANVPYDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCK 240
           DKLLAHFS YGEIEEGPLGFDKQTGKC+GYALFVYK PEGAQAALVDP+K I+GRQL+CK
Sbjct: 181 DKLLAHFSFYGEIEEGPLGFDKQTGKCKGYALFVYKTPEGAQAALVDPVKNIEGRQLTCK 240

Query: 241 FANDGKKGKPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFS 300
            A DGKKGKP G   G Q PG+G  N HGDGM +A PS++    GQYGGPGG+GSYGGFS
Sbjct: 241 LAIDGKKGKPDGPGQG-QGPGSGP-NAHGDGMGLAQPSSI---AGQYGGPGGIGSYGGFS 300

Query: 301 SGVQGGQALGHHPLNSSMGPGLSSVGGQAPSSLGSSGGYG---GGPYGGGYGGPASSIY- 360
            G QG   LGHHPL    GPGLSSVG Q  S LG+ GGYG   GGPY G YGGP S  Y 
Sbjct: 301 GGHQGPPPLGHHPLG---GPGLSSVGNQVNSGLGAGGGYGAGLGGPY-GNYGGPGSVGYG 360

Query: 361 ----GGMGSVGGGLGGSAGGLGGTGG----PSSLYRMPQSSVGMPSGGYPDSGHYSMSSA 420
               GG+G  GGGLGG+A G G  GG     SSLY +  SS G+PS  +P+SGHY +SS 
Sbjct: 361 LGGTGGLGGAGGGLGGAASGGGAPGGGVGTGSSLYGLAPSSAGLPSSRFPESGHYGLSS- 420

Query: 421 SGHPNPLHQQAVTSPAPRVPPGGMYPSVPPYY 436
             + N  HQQA TSP PRVPPGGMYP+VPPYY
Sbjct: 421 --YQNQHHQQAGTSPMPRVPPGGMYPNVPPYY 440

[Close]

BLAST of CmoCh04G006070 vs. TrEMBL
Match: A5ADJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g01570 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 4.7e-144
Identity = 311/459 (67.76%), Postives = 354/459 (77.12%), Query Frame = 1


Query: 1   MDATKKRRMEENGVDSSE-NSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDAV 60
           MDATKKR+M+ENG+ S++ +S  K+  +DARKII+ F  DQL++ILQ+A  RH DVLDA+
Sbjct: 1   MDATKKRKMDENGLVSTDGDSLTKLAPEDARKIIEPFGHDQLLEILQNAAVRHLDVLDAI 60

Query: 61  RSIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTFK 120
           RSIADRD++QRKLFIRGL  DT+TEGLR LFSAYGELEEAVVI+DK T KSKGYGFVTFK
Sbjct: 61  RSIADRDLTQRKLFIRGLGWDTTTEGLRQLFSAYGELEEAVVILDKVTAKSKGYGFVTFK 120

Query: 121 HVDGAILALKEPSKTIDGRVTVTQLAAVGISGQNSNAA--DMSLRKIYVANVPMDMPADK 180
           HVDGA+LALKEPSK IDGR+TVTQLAA G+SG  SNA+  D+S+RKIYVANVP+DMPAD+
Sbjct: 121 HVDGALLALKEPSKKIDGRMTVTQLAASGLSGPASNASAVDVSMRKIYVANVPVDMPADR 180

Query: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFA 240
           LLAHFS YGEIEEGPLGFDKQTGK RG+ALFVYK  E AQAALVDP K IDGRQL CK A
Sbjct: 181 LLAHFSSYGEIEEGPLGFDKQTGKSRGFALFVYKTAEAAQAALVDPTKMIDGRQLVCKLA 240

Query: 241 NDGKKGKPGGGQDGIQTPGAGQGNL-HGDGMPMAPPSAMPGS-GGQY-GGPGGMGSYGGF 300
            +GKKGK GG     Q P    G   HGDG+ + P  +MPGS G QY GGPGG+ +YGGF
Sbjct: 241 IEGKKGKTGGPA---QAPTGVPGEAGHGDGLGVPPQGSMPGSLGSQYPGGPGGISAYGGF 300

Query: 301 SSGVQGGQALGHH-PLNSSM------GPGLSSVGGQAPSSLGSSGGYG---GGPYGGG-Y 360
           S G      LGHH PLNSS+      GPGLSS   Q PSSLG S GYG   GGPYG   Y
Sbjct: 301 SGGPP---PLGHHHPLNSSLPSSLGGGPGLSS---QVPSSLGGSAGYGAGLGGPYGSAHY 360

Query: 361 GGPASSIYGGMGSVGGGLGGSAGGLGGTGGP-------SSLYRMPQSSVGMPSGGYPDSG 420
           GGP S+ Y G+G  GG LGG+AG LG  GG        SSLYR+P S+VGMPSGGYPDSG
Sbjct: 361 GGPNSAGYSGLGGAGG-LGGAAGALGVAGGALGVAGGGSSLYRLPPSTVGMPSGGYPDSG 420

Query: 421 HYSMSSASGHPNPLHQQAVTSPAPRVPPGGMYPSVPPYY 436
           HYS+SS+S +P+ +HQ A TSP PRVPPGGMYPS PPYY
Sbjct: 421 HYSLSSSSAYPSQIHQPAGTSPVPRVPPGGMYPSGPPYY 449

[Close]

BLAST of CmoCh04G006070 vs. TrEMBL
Match: A0A072TQR0_MEDTR (RNA-binding (RRM/RBD/RNP motif) family protein OS=Medicago truncatula GN=MTR_8g463890 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 1.9e-137
Identity = 286/453 (63.13%), Postives = 343/453 (75.72%), Query Frame = 1


Query: 1   MDATKKRRMEENGVDSSENSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDAVR 60
           MD TKKR+++ENG    E+  LK++  + RK+I+RFTPDQLI+ILQDAV RH DVL AVR
Sbjct: 5   MDPTKKRKLDENGF-GGESDHLKLSPSEGRKLIERFTPDQLINILQDAVVRHPDVLSAVR 64

Query: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTFKH 120
           ++ D D+S+RKLFIRGL  DT+TEGLRSLFS YGELEEA+VI+DKATGKSKGYGFVTF H
Sbjct: 65  AVVDPDISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLH 124

Query: 121 VDGAILALKEPSKTIDGRVTVTQLAAVGISGQNSNAADMSLRKIYVANVPMDMPADKLLA 180
           VDGA+LAL+EPSK IDGRVTVTQLAA G SG N+NAAD++ RKIYV+NVP D+P DKLLA
Sbjct: 125 VDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADVAQRKIYVSNVPPDLPGDKLLA 184

Query: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFA--N 240
           HFS+YGEIEEGPLGFDKQTG+ +G+ALFVYK PEGA AA+ +P+K ++GRQL+CK A  +
Sbjct: 185 HFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQLNCKLAITD 244

Query: 241 DGKKGKPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSGV 300
            GK+    GG DG Q    G+GN HG+G+ MAP  A   + GQYG   GMGSYGGFS+G 
Sbjct: 245 GGKQQGMRGGPDGAQ----GRGNAHGNGLGMAP--AAGSASGQYGASVGMGSYGGFSAGH 304

Query: 301 QGGQALGHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPASSIYGGMGSVG 360
           QG   +G+HPL+SS+G GLSSVG QAPSS+G +GGYGGG YGG Y GP ++ YGG G  G
Sbjct: 305 QGQPPMGNHPLSSSVGGGLSSVGNQAPSSIGGAGGYGGGHYGG-YSGPTAAGYGGSGGGG 364

Query: 361 GG--------------LGGSAGGLGGTGGP--SSLYRMPQSSVGMPSGGYPDSGHYSMSS 420
           GG               GG  G  GG+GG   +SLYR+P SS GM +GGYPDSGHY   +
Sbjct: 365 GGGYGGGSGVTGPGVGAGGGHGSAGGSGGHGLASLYRLP-SSGGMQAGGYPDSGHY---N 424

Query: 421 ASGHPNPLHQQAVTSPAPRVPPGGMYPSVPPYY 436
           +SG+ N  H  A  SP PRV PG MY +VPPYY
Sbjct: 425 SSGYQNQHHPPAGASPVPRVQPGSMYSNVPPYY 445

[Close]

BLAST of CmoCh04G006070 vs. TrEMBL
Match: A0A0D2R1K1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G063400 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 1.2e-136
Identity = 292/450 (64.89%), Postives = 334/450 (74.22%), Query Frame = 1


Query: 1   MDATKKRRMEENGVDSSENS---FLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLD 60
           MD TKKR+++ENG  S+++      K+T  D RK+I+RFT DQL+DILQDAV RH DVL 
Sbjct: 4   MDPTKKRKLDENGTVSAQSEPDPITKLTPQDGRKLIERFTVDQLLDILQDAVCRHVDVLS 63

Query: 61  AVRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVT 120
           AVRSIAD+D SQRKLFIRGL  DT+T+GLRSLFS YGELEEAVVI+DK TGKSKGYGFVT
Sbjct: 64  AVRSIADQDPSQRKLFIRGLGWDTTTDGLRSLFSVYGELEEAVVILDKTTGKSKGYGFVT 123

Query: 121 FKHVDGAILALKEPSKTIDGRVTVTQLAAVGISGQNSNAADMSLRKIYVANVPMDMPADK 180
           FKHVDGA+LALKEPSK IDGRVTVTQLAA G S  NSN  D+ +RKIYVANVP DMPADK
Sbjct: 124 FKHVDGALLALKEPSKKIDGRVTVTQLAAAGNSATNSNPVDIHMRKIYVANVPYDMPADK 183

Query: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFA 240
           LL HFS YGEIEEGPLGFDKQTGK RG+ALFVYK  EGAQAAL +P+K IDGRQ++CK A
Sbjct: 184 LLGHFSQYGEIEEGPLGFDKQTGKSRGFALFVYKTAEGAQAALAEPVKNIDGRQMNCKLA 243

Query: 241 NDGKKGKPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSG 300
            +GKKGK G  QDG+   G G        +P      M G GG YGGPGG   YGGFS G
Sbjct: 244 IEGKKGKQG--QDGMMQSGGG--------VPGNAEMGMGGHGGGYGGPGG---YGGFSGG 303

Query: 301 VQGGQA-LGH-HPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGG-------GYGGPAS 360
           +QG    +GH HPLNSS G G+ ++ G    + G   G GG PYGG       GYGGP S
Sbjct: 304 MQGPPGPMGHPHPLNSS-GVGVGALSGNGGVAAGGYSGLGG-PYGGYGGQGSTGYGGPGS 363

Query: 361 SIYGGMGS-VGGGL--GGSAGGLGGTGGPSSLYRMPQSSVGMPSGGYPDSGHYSMSSASG 420
           + YGG GS V GGL   G+ GGLG   G SSLYRMP SS GMP+GGYP++ HYS+SS++ 
Sbjct: 364 AGYGGPGSTVYGGLTGAGAGGGLGAASGGSSLYRMPPSSAGMPTGGYPETAHYSLSSSAA 423

Query: 421 HPNPLHQQAVTSPAPRVPPGGMYPSVPPYY 436
            P+ LHQ A TSPAPRVPPG MYP+ PP+Y
Sbjct: 424 FPSQLHQGAGTSPAPRVPPGAMYPNGPPFY 438

[Close]

BLAST of CmoCh04G006070 vs. TAIR10
Match: AT3G15010.1 (AT3G15010.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 433.0 bits (1112), Expect = 2.3e-121
Identity = 259/443 (58.47%), Postives = 308/443 (69.53%), Query Frame = 1


Query: 1   MDATKKRRMEENGVDSSENSF-----LKITSDDARKIIDRFTPDQLIDILQDAVSRHTDV 60
           MD  KKR+++ENG   + N        +++  DARKII+RFT DQL+D+LQ+A+ RH DV
Sbjct: 1   MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60

Query: 61  LDAVRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGF 120
           L++VR  AD D+SQRKLFIRGL+ DT+TEGLRSLFS+YG+LEEA+VI+DK TGKSKGYGF
Sbjct: 61  LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120

Query: 121 VTFKHVDGAILALKEPSKTIDGRVTVTQLAAVGISGQNSNAADMSLRKIYVANVPMDMPA 180
           VTF HVDGA+LALKEPSK IDGRVTVTQLAA G  G  S  AD+S+RKIYVANVP DMPA
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCK 240
           D+LL HF  YG++EEGPLGFDK TGK RG+ALFVYK  EGAQAAL DP+K IDG+ L+CK
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCK 240

Query: 241 FANDGKKG-KPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGF 300
            A DGKKG KPG  Q   Q  G+G G++HG+GM M  P+      G YG  GG+ +YGG+
Sbjct: 241 LAVDGKKGGKPGMPQ--AQDGGSGHGHVHGEGMGMVRPA------GPYGAAGGISAYGGY 300

Query: 301 SSGVQGGQALGHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPASS-IYGG 360
           S G         H   SSMG G              S GYGG  + GGYGGP  + +YGG
Sbjct: 301 SGGPPAHHMNSTH---SSMGVG--------------SAGYGG--HYGGYGGPGGTGVYGG 360

Query: 361 MGSVGGGLGGSAGGLGGTGGPSSLYRMPQSSVGMPSGG-YPDSGHYSMSSASGHPNPLHQ 420
           +G          GG GG G  S  YRMP SS  MP GG YP+SGHY +SS++G+P   HQ
Sbjct: 361 LG----------GGYGGPGTGSGQYRMPPSS--MPGGGGYPESGHYGLSSSAGYPGQHHQ 404

Query: 421 QAVTSPAPRVPPGGMYPSVPPYY 436
              TSP PRVP GGMYP+ PP Y
Sbjct: 421 AVGTSPVPRVPHGGMYPNGPPNY 404

[Close]

BLAST of CmoCh04G006070 vs. TAIR10
Match: AT2G41060.1 (AT2G41060.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 176.4 bits (446), Expect = 3.8e-44
Identity = 140/362 (38.67%), Postives = 189/362 (52.21%), Query Frame = 1


Query: 32  IIDRFTPDQLIDILQDAVSRHTDVLDAVRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFS 91
           +++ F+ DQL+ +L++A  RH DV + +R +AD D+  RK+F+ GL  DT  + L   F 
Sbjct: 90  LLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSLIDAFK 149

Query: 92  AYGELEEAVVIIDKATGKSKGYGFVTFKHVDGAILALKEPSKTIDGRVTVTQLAAVG--- 151
            YGE+E+   ++DK +G+SKGYGF+ FK   GA  ALK+P K I  R+T  QLA++G   
Sbjct: 150 QYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQ 209

Query: 152 -----ISGQNSNAADMSLRKIYVANVPMDMPADKLLAHFSLYGEIEEGPLGFDKQTGKCR 211
                   Q+ N  ++  RKIYV+NV  D+   KLL  FS +GEIEEGPLG DK TG+ +
Sbjct: 210 GNPVVAPAQHFNPENVQ-RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPK 269

Query: 212 GYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDGKKGKPGGGQDGIQTPGAGQGNLH 271
           G+ALFVY+  E A+ AL +P KT +G  L C  ANDG              P   + + H
Sbjct: 270 GFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDG--------------PKQVKQHQH 329

Query: 272 GDGMPMAPPSAMPGSGGQYGGPGGMGSY-GGFSSGVQG-----GQALGHHPLNSSMGPGL 331
                             YG PGG G +  G +  VQ      GQAL     +   G GL
Sbjct: 330 NHNSHNQNSRYQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPAIGQALTALLASQGAGLGL 389

Query: 332 SSVGGQAPSSLGSSGGYGGGPYGG---GYGGPAS---SIYGGMGSVGGGLGGSAGGLGGT 374
           +   GQA   LG+ G    G  GG   GYG  A+    +Y G G+  G  GG      G 
Sbjct: 390 NQAFGQA--LLGTLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQAGYQGGYQTQQPGQ 434

[Close]

BLAST of CmoCh04G006070 vs. TAIR10
Match: AT3G56860.3 (AT3G56860.3 UBP1-associated protein 2A)

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-41
Identity = 156/417 (37.41%), Postives = 202/417 (48.44%), Query Frame = 1


Query: 2   DATKKRRMEENGVDSSENSFLKITSDDARKI---IDRFTPDQLIDILQDAVSRHTDVLDA 61
           D T   R+E      S N       DD   I   ++ F+ +Q++ +L++A  +H DV + 
Sbjct: 73  DQTDGNRIEAAATSGSGNQ----EDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANR 132

Query: 62  VRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTF 121
           +R +AD D   RK+F+ GL  DT TE L   F  YGE+E+   + DK +GKSKGYGF+ +
Sbjct: 133 IREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 192

Query: 122 KHVDGAILALKEPSKTIDGRVTVTQL--------------AAVGISGQNSNAADMSLRKI 181
           K   GA  ALK+P K I  R+T  QL              AAV    Q+SN ++ + +KI
Sbjct: 193 KSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSN-SEHTQKKI 252

Query: 182 YVANVPMDMPADKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPI 241
           YV+NV  ++   KLL  FS +GEIEEGPLG DK TG+ +G+ LFVYK  E A+ AL +P 
Sbjct: 253 YVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPH 312

Query: 242 KTIDGRQLSCKFANDGKKGKPGGGQDGIQTPGAGQGNLH--GDGMPMAPPSAMPGSGG-Q 301
           KT +G  L C+ A DG   KPG  Q     P A     +   D     PP    G G   
Sbjct: 313 KTFEGHILHCQKAIDGP--KPGKQQQHHHNPHAYNNPRYQRNDNNGYGPPG---GHGHLM 372

Query: 302 YGGPGGMGSYGGFSSGVQGGQALGHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGG 361
            G P GMG           GQAL    L +S G GL+       + LGS G   G   G 
Sbjct: 373 AGNPAGMGGPTAQVINPAIGQAL--TALLASQGAGLAFNPAIGQALLGSLGTAAGVNPGN 432

Query: 362 GYGGPASSIYGGMGSVGGGLGGSAGGLGGTGGPSSLYRMPQSSVGMPSGGYPDSGHY 399
           G G P    YG      G + G     G  GG    Y+ PQ   G  S G    G Y
Sbjct: 433 GVGMPTG--YGTQAMAPGTMPGYGTQPGLQGG----YQTPQPGQGGTSRGQHGVGPY 471

[Close]

BLAST of CmoCh04G006070 vs. TAIR10
Match: AT2G22090.2 (AT2G22090.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-24
Identity = 59/132 (44.70%), Postives = 84/132 (63.64%), Query Frame = 1


Query: 17  SENSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDAVRSIADRDVSQRKLFIRG 76
           S+N F     ++ R+++  ++ DQL+D++  A    + +  AV   ADRDV+ RK+F+ G
Sbjct: 54  SDNEF---DPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYG 113

Query: 77  LSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTFKHVDGAILALKEPSKTID 136
           L  +T+ E L  +F  YGE+EE  V+IDKATGK+KG+GFV FK   GA  ALKEP K I 
Sbjct: 114 LPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL 173

Query: 137 GRVTVTQLAAVG 149
            R    QLA++G
Sbjct: 174 NRTATCQLASMG 182

[Close]

BLAST of CmoCh04G006070 vs. TAIR10
Match: AT2G19380.1 (AT2G19380.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-21
Identity = 82/289 (28.37%), Postives = 139/289 (48.10%), Query Frame = 1


Query: 2   DATKKRRMEENGVDSSENSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDAVRS 61
           D  KKR+ ++    S  +S  +   +D ++++  ++ ++L++++     + + ++ A+  
Sbjct: 342 DKEKKRKKDKKQTKS--DSDFEHDKEDIKQLLVAYSKEELVNLIYKTAEKGSRLISAILE 401

Query: 62  IADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTFKHV 121
            ADRD++QR +F+RG   DT+ E L++ F +YGE+EE  V++DK TG+ KGYGFV FK  
Sbjct: 402 SADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTR 461

Query: 122 DGAILALKEPSKTIDGRVTVTQLAA--VGISGQNSNAADMSLRKIYVANVPMDMPADKLL 181
            GA  ALK P K +  R+ V  LA+   G +G+  + A+     + +    M   ++ +L
Sbjct: 462 KGAREALKRPEKRMYNRIVVCNLASEKPGKAGKEQDMAE----PVNIDLTKMANQSEAVL 521

Query: 182 AHFSL-YGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPI-KTIDGRQLSCKFA 241
               L  G + E      +QT    G  +  Y      Q    DP+   + G Q+     
Sbjct: 522 PGIELGRGHVLEKMHHQQQQTMDMFGQNMPFYGYSH--QFPGFDPMYGALSGNQMLAGLP 581

Query: 242 NDGKKGKPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPG 287
           N G                 G G +   G  + PP+ + G  GQY G G
Sbjct: 582 NYGM---------------FGSGMMTNQGSMLPPPNHL-GMAGQYFGDG 606

[Close]

BLAST of CmoCh04G006070 vs. NCBI nr
Match: gi|449438887|ref|XP_004137219.1| (PREDICTED: UBP1-associated protein 2C [Cucumis sativus])

HSP 1 Score: 770.8 bits (1989), Expect = 1.3e-219
Identity = 405/435 (93.10%), Postives = 416/435 (95.63%), Query Frame = 1


Query: 1   MDATKKRRMEENGVDSSENSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDAVR 60
           MD TKKRRM+ENGVDSSE+SF +IT +DARKIIDRFTPDQLIDILQDAVSRH DVLDAVR
Sbjct: 1   MDVTKKRRMDENGVDSSESSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHLDVLDAVR 60

Query: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTFKH 120
           SIADRDVSQRKLFIRGLSCDTSTEGLRSLFS+YGELEEAVVIIDKATGKSKGYGFVTFKH
Sbjct: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSSYGELEEAVVIIDKATGKSKGYGFVTFKH 120

Query: 121 VDGAILALKEPSKTIDGRVTVTQLAAVGISGQNSNAADMSLRKIYVANVPMDMPADKLLA 180
           VDGA+LALKEPSKTIDGRVTVTQLAAVGISGQNSNAAD+SLRKIYVANVPMDMPADKLLA
Sbjct: 121 VDGALLALKEPSKTIDGRVTVTQLAAVGISGQNSNAADLSLRKIYVANVPMDMPADKLLA 180

Query: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240
           HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG
Sbjct: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240

Query: 241 KKGKPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSGVQG 300
           KKGKPGGG DG QT GAGQGN+HGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSG+QG
Sbjct: 241 KKGKPGGGPDGNQTQGAGQGNVHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSGLQG 300

Query: 301 GQALGHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPASSIYGGMGSVGGG 360
            Q L HHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGP  SIYGGMGSVGGG
Sbjct: 301 AQPLAHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGP-GSIYGGMGSVGGG 360

Query: 361 LGGSAGGLGGTGGPSSLYRMPQSSVGMPSGGYPDSGHYSMSSASGHPNPLHQQAVTSPAP 420
           LGGS GGLGG GG SSLYR+PQSSVGMPSGGYPDSGHYSMSSASGHPN  HQ A TSPAP
Sbjct: 361 LGGSGGGLGGAGGASSLYRLPQSSVGMPSGGYPDSGHYSMSSASGHPNQHHQPAGTSPAP 420

Query: 421 RVPPGGMYPSVPPYY 436
           RVPPGGMYP+VPPYY
Sbjct: 421 RVPPGGMYPNVPPYY 434

[Close]

BLAST of CmoCh04G006070 vs. NCBI nr
Match: gi|659101647|ref|XP_008451717.1| (PREDICTED: UBP1-associated protein 2C [Cucumis melo])

HSP 1 Score: 766.5 bits (1978), Expect = 2.4e-218
Identity = 403/435 (92.64%), Postives = 414/435 (95.17%), Query Frame = 1


Query: 1   MDATKKRRMEENGVDSSENSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDAVR 60
           MD TKKRRM+ENGVDSSENSF +IT +DARKIIDRFTPDQLIDILQDAVSRH DVL+AVR
Sbjct: 1   MDVTKKRRMDENGVDSSENSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHLDVLEAVR 60

Query: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTFKH 120
           SIADRDVSQRKLFIRGLSCDTSTEGLRSLFS+YGELEEAVVIIDKATGKSKGYGFVTFKH
Sbjct: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSSYGELEEAVVIIDKATGKSKGYGFVTFKH 120

Query: 121 VDGAILALKEPSKTIDGRVTVTQLAAVGISGQNSNAADMSLRKIYVANVPMDMPADKLLA 180
           VDGA+LALKEPSKTIDGRVTVTQLAAVGISGQNSNAAD+SLRKIYVANVPMDMPADKLLA
Sbjct: 121 VDGALLALKEPSKTIDGRVTVTQLAAVGISGQNSNAADLSLRKIYVANVPMDMPADKLLA 180

Query: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240
           HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG
Sbjct: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240

Query: 241 KKGKPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSGVQG 300
           KKGKPGGG DG QT GAGQGN+HGDGMPMAPPSAMPGSG QYGGPGGMGSY GFSSG+QG
Sbjct: 241 KKGKPGGGPDGNQTQGAGQGNVHGDGMPMAPPSAMPGSGAQYGGPGGMGSYAGFSSGLQG 300

Query: 301 GQALGHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPASSIYGGMGSVGGG 360
            Q L HHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGP  SIYGGMGSVGGG
Sbjct: 301 AQPLAHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGP-GSIYGGMGSVGGG 360

Query: 361 LGGSAGGLGGTGGPSSLYRMPQSSVGMPSGGYPDSGHYSMSSASGHPNPLHQQAVTSPAP 420
           LGGS GGLGG GG SSLYR+PQSSVGMPSGGYPDSGHYSMSSASGHPN  HQ A TSPAP
Sbjct: 361 LGGSGGGLGGAGGASSLYRLPQSSVGMPSGGYPDSGHYSMSSASGHPNQHHQPAGTSPAP 420

Query: 421 RVPPGGMYPSVPPYY 436
           RVPPGGMYP+VPPYY
Sbjct: 421 RVPPGGMYPNVPPYY 434

[Close]

BLAST of CmoCh04G006070 vs. NCBI nr
Match: gi|1009161987|ref|XP_015899190.1| (PREDICTED: UBP1-associated protein 2C [Ziziphus jujuba])

HSP 1 Score: 602.4 bits (1552), Expect = 6.1e-169
Identity = 338/452 (74.78%), Postives = 376/452 (83.19%), Query Frame = 1


Query: 1   MDATKKRRMEENGVDSSENSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDAVR 60
           MD TKKR+MEENG   ++ S LK+T +DARKII+RFTPDQLI+ILQ+AV+ H DVL+AVR
Sbjct: 1   MDLTKKRKMEENGAGDADPSVLKLTPEDARKIIERFTPDQLIEILQEAVAHHADVLEAVR 60

Query: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTFKH 120
           S+AD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEAVVI+DK TGKSKGYGFVTF+H
Sbjct: 61  SVADPDTSQRKLFIRGLGWDTTTEGLRALFSAYGELEEAVVILDKTTGKSKGYGFVTFRH 120

Query: 121 VDGAILALKEPSKTIDGRVTVTQLAAVGISGQNSN---AADMSLRKIYVANVPMDMPADK 180
           VDGA+LALKEPSK IDGR+TVTQLAA G SG N+N   A D+SLRKIYVANVP DMPADK
Sbjct: 121 VDGALLALKEPSKKIDGRMTVTQLAAAGNSGANTNSNAAVDVSLRKIYVANVPYDMPADK 180

Query: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFA 240
           LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYK PEGAQAALVDP+KTI+GRQL+CK A
Sbjct: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKTPEGAQAALVDPVKTIEGRQLTCKLA 240

Query: 241 NDGKKGKPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGS-GGQYGGPGGMGSYGGFSS 300
            DGKKGK G G DGIQ P  G GN HGDGM +APPS+MPGS GGQYGGP G+GSYGGFS 
Sbjct: 241 IDGKKGKQGSGADGIQAPVGGPGNAHGDGMGLAPPSSMPGSIGGQYGGPAGIGSYGGFSG 300

Query: 301 GVQGGQALGHHPLNSSM-GPGLSSVGGQAPSSLGSSGGYG---GGPYGGGYGGPASSIYG 360
           G+Q G  +GHHPLNSS+ GPGLSSVG QAPSSLG +GGYG   GGPY GGYGGP S+ +G
Sbjct: 301 GLQ-GPPMGHHPLNSSIGGPGLSSVGNQAPSSLGGAGGYGSGLGGPY-GGYGGPGSAGFG 360

Query: 361 GMGS--VGGGLGGS-AGGLGGT------GGPSSLYRMPQSSVGMPSGGYPDSGHYSMSSA 420
           G+GS   GGGL GS AGGLGG       GG SSLYR+P SS G+PS GYPD+GHY+MSS+
Sbjct: 361 GLGSGGAGGGLAGSAAGGLGGAGGGAGGGGGSSLYRLPPSSGGIPSSGYPDTGHYNMSSS 420

Query: 421 SGHPNPLHQQAVTSPAPRVPPGGMYPSVPPYY 436
           S +    HQ A TSP PRVPPGGMYP  PPYY
Sbjct: 421 SAYQGQHHQPAGTSPVPRVPPGGMYP--PPYY 448

[Close]

BLAST of CmoCh04G006070 vs. NCBI nr
Match: gi|645240221|ref|XP_008226506.1| (PREDICTED: UBP1-associated protein 2C [Prunus mume])

HSP 1 Score: 548.1 bits (1411), Expect = 1.4e-152
Identity = 316/452 (69.91%), Postives = 356/452 (78.76%), Query Frame = 1


Query: 1   MDATKKRRMEENGV--DSSENSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDA 60
           MD +KKR+++ENGV  D+  +S  K++ +DARK+I+RF PDQLIDILQDAV+RH DVLDA
Sbjct: 1   MDPSKKRKLDENGVVLDTDPSSIPKLSPEDARKLIERFNPDQLIDILQDAVTRHVDVLDA 60

Query: 61  VRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTF 120
           VRSIAD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEA+VI+DK TGKS+GYGFVTF
Sbjct: 61  VRSIADLDASQRKLFIRGLGWDTTTEGLRALFSAYGELEEAIVILDKVTGKSRGYGFVTF 120

Query: 121 KHVDGAILALKEPSKTIDGRVTVTQLAAVGISGQN---SNAADMSLRKIYVANVPMDMPA 180
           +HVDGA+LALKEPSK IDGR+TVTQLAA G S  N   +NAAD+SLRKIYVANVP DMPA
Sbjct: 121 RHVDGALLALKEPSKKIDGRMTVTQLAAAGNSSSNVSSNNAADVSLRKIYVANVPYDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCK 240
           DKLLAHFS YGEIEEGPLGFDKQTGKC+GYALFVYK PEGAQAALVDP+K I+GRQL+CK
Sbjct: 181 DKLLAHFSFYGEIEEGPLGFDKQTGKCKGYALFVYKTPEGAQAALVDPVKNIEGRQLTCK 240

Query: 241 FANDGKKGKPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFS 300
            A DGKKGKP G   G Q PG+G  N HGDGM MA PS++    GQYGGPGG+GSYGGFS
Sbjct: 241 LAIDGKKGKPDGPGQG-QGPGSGP-NAHGDGMGMAQPSSI---AGQYGGPGGIGSYGGFS 300

Query: 301 SGVQGGQALGHHPLNSSMGPGLSSVGGQAPSSLGSSGGYG---GGPYGGGYGGPASSIY- 360
           SG QG   LGHHPL    GPGLSSVG Q  S LG+ GGYG   GGPY G YGGP S  Y 
Sbjct: 301 SGHQGPPPLGHHPLG---GPGLSSVGNQVNSGLGAGGGYGAGLGGPY-GNYGGPGSVGYG 360

Query: 361 ----GGMGSVGGGLGGSAGGLGGTGG----PSSLYRMPQSSVGMPSGGYPDSGHYSMSSA 420
               GG+G  GGGLGG+A G G  GG     SSLY +  SS G+PS  +P+SGHY +SS 
Sbjct: 361 LGGAGGLGGAGGGLGGAASGGGAPGGGVGTGSSLYGLAPSSAGLPSSRFPESGHYGLSS- 420

Query: 421 SGHPNPLHQQAVTSPAPRVPPGGMYPSVPPYY 436
             + N  HQQA TSP PRVPPGGMYP+VPPYY
Sbjct: 421 --YQNQHHQQAGTSPMPRVPPGGMYPNVPPYY 440

[Close]

BLAST of CmoCh04G006070 vs. NCBI nr
Match: gi|595863695|ref|XP_007211635.1| (hypothetical protein PRUPE_ppa005857mg [Prunus persica])

HSP 1 Score: 545.4 bits (1404), Expect = 8.8e-152
Identity = 314/452 (69.47%), Postives = 355/452 (78.54%), Query Frame = 1


Query: 1   MDATKKRRMEENGV--DSSENSFLKITSDDARKIIDRFTPDQLIDILQDAVSRHTDVLDA 60
           MD +KKR+++ENGV  D+  +S  K++ +DARK+I+RF PDQLIDILQDAV+RH DVLDA
Sbjct: 1   MDPSKKRKLDENGVVLDTDPSSIPKLSPEDARKLIERFNPDQLIDILQDAVTRHVDVLDA 60

Query: 61  VRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKATGKSKGYGFVTF 120
           VRSIAD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEA+VI+DK TGKS+GYGFVTF
Sbjct: 61  VRSIADLDASQRKLFIRGLGWDTTTEGLRALFSAYGELEEAIVILDKVTGKSRGYGFVTF 120

Query: 121 KHVDGAILALKEPSKTIDGRVTVTQLAAVGISGQN---SNAADMSLRKIYVANVPMDMPA 180
           +HVDGA+LALKEPSK IDGR+TVTQLAA G S  N   +NAAD+SLRKIYVANVP DMPA
Sbjct: 121 RHVDGALLALKEPSKKIDGRMTVTQLAAAGNSSSNVSSNNAADVSLRKIYVANVPYDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCK 240
           DKLLAHFS YGEIEEGPLGFDKQTGKC+GYALFVYK PEGAQAALVDP+K I+GRQL+CK
Sbjct: 181 DKLLAHFSFYGEIEEGPLGFDKQTGKCKGYALFVYKTPEGAQAALVDPVKNIEGRQLTCK 240

Query: 241 FANDGKKGKPGGGQDGIQTPGAGQGNLHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFS 300
            A DGKKGKP G   G Q PG+G  N HGDGM +A PS++    GQYGGPGG+GSYGGFS
Sbjct: 241 LAIDGKKGKPDGPGQG-QGPGSGP-NAHGDGMGLAQPSSI---AGQYGGPGGIGSYGGFS 300

Query: 301 SGVQGGQALGHHPLNSSMGPGLSSVGGQAPSSLGSSGGYG---GGPYGGGYGGPASSIY- 360
            G QG   LGHHPL    GPGLSSVG Q  S LG+ GGYG   GGPY G YGGP S  Y 
Sbjct: 301 GGHQGPPPLGHHPLG---GPGLSSVGNQVNSGLGAGGGYGAGLGGPY-GNYGGPGSVGYG 360

Query: 361 ----GGMGSVGGGLGGSAGGLGGTGG----PSSLYRMPQSSVGMPSGGYPDSGHYSMSSA 420
               GG+G  GGGLGG+A G G  GG     SSLY +  SS G+PS  +P+SGHY +SS 
Sbjct: 361 LGGTGGLGGAGGGLGGAASGGGAPGGGVGTGSSLYGLAPSSAGLPSSRFPESGHYGLSS- 420

Query: 421 SGHPNPLHQQAVTSPAPRVPPGGMYPSVPPYY 436
             + N  HQQA TSP PRVPPGGMYP+VPPYY
Sbjct: 421 --YQNQHHQQAGTSPMPRVPPGGMYPNVPPYY 440

The following BLAST results are available for this feature:

BLAST of CmoCh04G006070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UBA2C_ARATH	4.0e-120	58.47	UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1	[more]
UBA2B_ARATH	6.8e-43	38.67	UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1	[more]
UBA2A_ARATH	3.1e-40	37.41	UBP1-associated protein 2A OS=Arabidopsis thaliana GN=UBA2A PE=1 SV=1	[more]
UBA1A_ARATH	3.5e-23	44.70	UBP1-associated proteins 1A OS=Arabidopsis thaliana GN=UBA1A PE=1 SV=2	[more]
ROA3_RAT	4.5e-23	34.48	Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 ...	[more]

BLAST of CmoCh04G006070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYY6_CUCSA	9.0e-220	93.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083660 PE=4 SV=1	[more]
M5WGI4_PRUPE	6.2e-152	69.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005857mg PE=4 SV=1	[more]
A5ADJ5_VITVI	4.7e-144	67.76	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g01570 PE=4 SV=...	[more]
A0A072TQR0_MEDTR	1.9e-137	63.13	RNA-binding (RRM/RBD/RNP motif) family protein OS=Medicago truncatula GN=MTR_8g4...	[more]
A0A0D2R1K1_GOSRA	1.2e-136	64.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G063400 PE=4 SV=1	[more]

BLAST of CmoCh04G006070 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15010.1	2.3e-121	58.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G41060.1	3.8e-44	38.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G56860.3	1.8e-41	37.41	UBP1-associated protein 2A	[more]
AT2G22090.2	2.0e-24	44.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G19380.1	1.2e-21	28.37	RNA recognition motif (RRM)-containing protein	[more]

BLAST of CmoCh04G006070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438887\|ref\|XP_004137219.1\|	1.3e-219	93.10	PREDICTED: UBP1-associated protein 2C [Cucumis sativus]	[more]
gi\|659101647\|ref\|XP_008451717.1\|	2.4e-218	92.64	PREDICTED: UBP1-associated protein 2C [Cucumis melo]	[more]
gi\|1009161987\|ref\|XP_015899190.1\|	6.1e-169	74.78	PREDICTED: UBP1-associated protein 2C [Ziziphus jujuba]	[more]
gi\|645240221\|ref\|XP_008226506.1\|	1.4e-152	69.91	PREDICTED: UBP1-associated protein 2C [Prunus mume]	[more]
gi\|595863695\|ref\|XP_007211635.1\|	8.8e-152	69.47	hypothetical protein PRUPE_ppa005857mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008219	cell death
biological_process	GO:0006952	defense response
biological_process	GO:0009693	ethylene biosynthetic process
biological_process	GO:0010150	leaf senescence
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003729	mRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G006070.1	CmoCh04G006070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 72..139 score: 2.3E-15coord: 164..232 score: 1.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 71..143 score: 2.8E-18coord: 163..235 score: 3.3
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 162..239 score: 13.174coord: 70..138 score: 15
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 65..143 score: 4.3E-20coord: 150..248 score: 3.9
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 63..145 score: 3.09E-21coord: 150..265 score: 1.61
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 426..433 score: 3.9E-128coord: 11..28 score: 3.9E-128coord: 67..292 score: 3.9E-128coord: 337..398 score: 3.9E
None	No IPR available	PANTHER	PTHR24012:SF490	UBP1-ASSOCIATED PROTEIN 2C	coord: 337..398 score: 3.9E-128coord: 426..433 score: 3.9E-128coord: 11..28 score: 3.9E-128coord: 67..292 score: 3.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G006070	Cucsa.273510	Cucumber (Gy14) v1	cgycmoB0755
CmoCh04G006070	CmaCh16G004220	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G006070	CmaCh04G005670	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G006070	Cla002434	Watermelon (97103) v1	cmowmB679
CmoCh04G006070	Csa4G083660	Cucumber (Chinese Long) v2	cmocuB706
CmoCh04G006070	MELO3C016101	Melon (DHL92) v3.5.1	cmomeB688
CmoCh04G006070	ClCG07G010010	Watermelon (Charleston Gray)	cmowcgB673
CmoCh04G006070	CSPI04G08100	Wild cucumber (PI 183967)	cmocpiB717
CmoCh04G006070	Lsi07G002960	Bottle gourd (USVL1VR-Ls)	cmolsiB695
CmoCh04G006070	Cp4.1LG14g03700	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G006070	Cp4.1LG01g01520	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G006070	MELO3C016101.2	Melon (DHL92) v3.6.1	cmomedB781
CmoCh04G006070	CsaV3_4G008320	Cucumber (Chinese Long) v3	cmocucB0834
CmoCh04G006070	Cla97C07G136700	Watermelon (97103) v2	cmowmbB751
CmoCh04G006070	Bhi01G002548	Wax gourd	cmowgoB0846
CmoCh04G006070	CsGy4G007960	Cucumber (Gy14) v2	cgybcmoB524
CmoCh04G006070	Carg11353	Silver-seed gourd	carcmoB0899
CmoCh04G006070	Carg13169	Silver-seed gourd	carcmoB0058

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G006070	CmoCh16G004540	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:

None