CmaCh16G004220 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G004220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-binding family protein
Location	Cma_Chr16 : 2110796 .. 2112200 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTCGGATTAGGGCTTTTAGCTTCACCCTCTTCTTCTTCCTCCTTAACTTTTACTCTACACCTCCGGGGACCTCCCTTCTCCGTCTCATTTACGCCATGGACGTCACCAAGAAACGGAGGATGGACGAAAATGGCGTCGACTCCTCCGACCATTCTTTTTCTAGAATTACTCCTGAAGACGCTCGCAAGATCATTGATCGTTTCACTCCGGACCAGCTTATCGATATTTTACAAGATGCAGTTTCGCGTCACGTGGATGTTCTTGATGCAGTACGGTGTATTGCAGACCGAGATGTTTCCCAGCGGAAGCTGTTTATTCGGGGTCTTAGTTGCGATACTAGTACAGAAGGTTTGCGTTCTCTCTTTTCCGCTTATGGCGAGCTTGAAGAAGCTGTTGTTATTATTGACAAGGTGACTGGGAAATCGAAAGGTTATGGCTTTGTGACTTTTAAGCATGTTGATGGTTCTATACTGGCCTTGAAGGAACCGAGCAAGACAATTGATGGCCGCGTTACGGTGACGCAATTGGCTGCAGTGGGAGTTTCTGGGCAGAGTTCGAACGCTGCAGACTTGTCGTTGAGGAAAATTTATGTGGCGAATGTTCCAATGGATATGCCAGCCGATAAGCTGTTGGCACACTTTTCGCTGTATGGAGAAATTGAGGAGGGACCGCTAGGCTTCGATAAGCAGACGGGTAAGTGTAGAGGCTATGCTTTGTTCGTGTACAAAAAGGCAGAGGGTGCTCAAGCAGCTCTGGTTGATCCAATCAAGGCGATTGATGGAAGGCAGTTGAGTTGTAAATACGCTAACGATGGGAAGAAAGGGAAACCTGGCGGTGGGACGGATGGAATTCAAACGACGGGAGCGGGTCAAGGAAACTTGCATGGAGATGGTATGCCTATGGCTCCTCCATCAGCAATCCCCGGTTCGGGCGGACAGTATGGTGGTCCGGGTGGCATGGGATCGTATGGAGGCTTTTCTGGTGGCCCTCAAGGGGCGCAGCCACTTGGTCACCATCCGCTCAACTCTTCAATGGGGCCAGGAATATCCTCTGTCGGTAGTCAGGCTCTATCTTCGCAGGGCAGCTCCGGCGGATATGGTGGCGGTCCATATGGTGGTGGGTACGGCGGGCCCGGTTCCTCAATATATGGTGGTATGGGAAGTGTAGGTGGGGGCTTGGGTAGTTCTGGAGGTGGATTGGGCGGAGCTGGGGATGTTTCATCACTGTATAGGTTATCACAGAGTTCGGTTGGAATACCTTCTGGTGGTTATCCGGATAGTGGGCATTATAGCATGTCATCAGCATCCGGGCACCCAAATCACCACCATCAACAGGCAGGAGCATCACCAGCACCACGTGTTCCACCTGGAGGATTGTATCCCAATATACCACCATATTACTGA

mRNA sequence

CACTCGGATTAGGGCTTTTAGCTTCACCCTCTTCTTCTTCCTCCTTAACTTTTACTCTACACCTCCGGGGACCTCCCTTCTCCGTCTCATTTACGCCATGGACGTCACCAAGAAACGGAGGATGGACGAAAATGGCGTCGACTCCTCCGACCATTCTTTTTCTAGAATTACTCCTGAAGACGCTCGCAAGATCATTGATCGTTTCACTCCGGACCAGCTTATCGATATTTTACAAGATGCAGTTTCGCGTCACGTGGATGTTCTTGATGCAGTACGGTGTATTGCAGACCGAGATGTTTCCCAGCGGAAGCTGTTTATTCGGGGTCTTAGTTGCGATACTAGTACAGAAGGTTTGCGTTCTCTCTTTTCCGCTTATGGCGAGCTTGAAGAAGCTGTTGTTATTATTGACAAGGTGACTGGGAAATCGAAAGGTTATGGCTTTGTGACTTTTAAGCATGTTGATGGTTCTATACTGGCCTTGAAGGAACCGAGCAAGACAATTGATGGCCGCGTTACGGTGACGCAATTGGCTGCAGTGGGAGTTTCTGGGCAGAGTTCGAACGCTGCAGACTTGTCGTTGAGGAAAATTTATGTGGCGAATGTTCCAATGGATATGCCAGCCGATAAGCTGTTGGCACACTTTTCGCTGTATGGAGAAATTGAGGAGGGACCGCTAGGCTTCGATAAGCAGACGGGTAAGTGTAGAGGCTATGCTTTGTTCGTGTACAAAAAGGCAGAGGGTGCTCAAGCAGCTCTGGTTGATCCAATCAAGGCGATTGATGGAAGGCAGTTGAGTTGTAAATACGCTAACGATGGGAAGAAAGGGAAACCTGGCGGTGGGACGGATGGAATTCAAACGACGGGAGCGGGTCAAGGAAACTTGCATGGAGATGGTATGCCTATGGCTCCTCCATCAGCAATCCCCGGTTCGGGCGGACAGTATGGTGGTCCGGGTGGCATGGGATCGTATGGAGGCTTTTCTGGTGGCCCTCAAGGGGCGCAGCCACTTGGTCACCATCCGCTCAACTCTTCAATGGGGCCAGGAATATCCTCTGTCGGTAGTCAGGCTCTATCTTCGCAGGGCAGCTCCGGCGGATATGGTGGCGGTCCATATGGTGGTGGGTACGGCGGGCCCGGTTCCTCAATATATGGTGGTATGGGAAGTGTAGGTGGGGGCTTGGGTAGTTCTGGAGGTGGATTGGGCGGAGCTGGGGATGTTTCATCACTGTATAGGTTATCACAGAGTTCGGTTGGAATACCTTCTGGTGGTTATCCGGATAGTGGGCATTATAGCATGTCATCAGCATCCGGGCACCCAAATCACCACCATCAACAGGCAGGAGCATCACCAGCACCACGTGTTCCACCTGGAGGATTGTATCCCAATATACCACCATATTACTGA

Coding sequence (CDS)

ATGGACGTCACCAAGAAACGGAGGATGGACGAAAATGGCGTCGACTCCTCCGACCATTCTTTTTCTAGAATTACTCCTGAAGACGCTCGCAAGATCATTGATCGTTTCACTCCGGACCAGCTTATCGATATTTTACAAGATGCAGTTTCGCGTCACGTGGATGTTCTTGATGCAGTACGGTGTATTGCAGACCGAGATGTTTCCCAGCGGAAGCTGTTTATTCGGGGTCTTAGTTGCGATACTAGTACAGAAGGTTTGCGTTCTCTCTTTTCCGCTTATGGCGAGCTTGAAGAAGCTGTTGTTATTATTGACAAGGTGACTGGGAAATCGAAAGGTTATGGCTTTGTGACTTTTAAGCATGTTGATGGTTCTATACTGGCCTTGAAGGAACCGAGCAAGACAATTGATGGCCGCGTTACGGTGACGCAATTGGCTGCAGTGGGAGTTTCTGGGCAGAGTTCGAACGCTGCAGACTTGTCGTTGAGGAAAATTTATGTGGCGAATGTTCCAATGGATATGCCAGCCGATAAGCTGTTGGCACACTTTTCGCTGTATGGAGAAATTGAGGAGGGACCGCTAGGCTTCGATAAGCAGACGGGTAAGTGTAGAGGCTATGCTTTGTTCGTGTACAAAAAGGCAGAGGGTGCTCAAGCAGCTCTGGTTGATCCAATCAAGGCGATTGATGGAAGGCAGTTGAGTTGTAAATACGCTAACGATGGGAAGAAAGGGAAACCTGGCGGTGGGACGGATGGAATTCAAACGACGGGAGCGGGTCAAGGAAACTTGCATGGAGATGGTATGCCTATGGCTCCTCCATCAGCAATCCCCGGTTCGGGCGGACAGTATGGTGGTCCGGGTGGCATGGGATCGTATGGAGGCTTTTCTGGTGGCCCTCAAGGGGCGCAGCCACTTGGTCACCATCCGCTCAACTCTTCAATGGGGCCAGGAATATCCTCTGTCGGTAGTCAGGCTCTATCTTCGCAGGGCAGCTCCGGCGGATATGGTGGCGGTCCATATGGTGGTGGGTACGGCGGGCCCGGTTCCTCAATATATGGTGGTATGGGAAGTGTAGGTGGGGGCTTGGGTAGTTCTGGAGGTGGATTGGGCGGAGCTGGGGATGTTTCATCACTGTATAGGTTATCACAGAGTTCGGTTGGAATACCTTCTGGTGGTTATCCGGATAGTGGGCATTATAGCATGTCATCAGCATCCGGGCACCCAAATCACCACCATCAACAGGCAGGAGCATCACCAGCACCACGTGTTCCACCTGGAGGATTGTATCCCAATATACCACCATATTACTGA

Protein sequence

MDVTKKRRMDENGVDSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYANDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQGAQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVGGGLGSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSSASGHPNHHHQQAGASPAPRVPPGGLYPNIPPYY

Homology

[Close]

BLAST of CmaCh16G004220 vs. Swiss-Prot
Match: UBA2C_ARATH (UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 4.1e-125
Identity = 262/443 (59.14%), Postives = 318/443 (71.78%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSF-----SRITPEDARKIIDRFTPDQLIDILQDAVSRHVDV 60
           MD+ KKR++DENG   + +       +R++P+DARKII+RFT DQL+D+LQ+A+ RH DV
Sbjct: 1   MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60

Query: 61  LDAVRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGF 120
           L++VR  AD D+SQRKLFIRGL+ DT+TEGLRSLFS+YG+LEEA+VI+DKVTGKSKGYGF
Sbjct: 61  LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120

Query: 121 VTFKHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPA 180
           VTF HVDG++LALKEPSK IDGRVTVTQLAA G  G  S  AD+S+RKIYVANVP DMPA
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCK 240
           D+LL HF  YG++EEGPLGFDK TGK RG+ALFVYK AEGAQAAL DP+K IDG+ L+CK
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCK 240

Query: 241 YANDGKK-GKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGF 300
            A DGKK GKP  G    Q  G+G G++HG+GM M  P+      G YG  GG+ +YGG+
Sbjct: 241 LAVDGKKGGKP--GMPQAQDGGSGHGHVHGEGMGMVRPA------GPYGAAGGISAYGGY 300

Query: 301 SGGPQGAQPLGH-HPLNSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGP-GSSIYG 360
           SGGP    P  H +  +SSMG G              S GYGG  + GGYGGP G+ +YG
Sbjct: 301 SGGP----PAHHMNSTHSSMGVG--------------SAGYGG--HYGGYGGPGGTGVYG 360

Query: 361 GMGSVGGGLGSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSSASGHPNHHHQ 420
           G+          GGG GG G  S  YR+  SS+    GGYP+SGHY +SS++G+P  HHQ
Sbjct: 361 GL----------GGGYGGPGTGSGQYRMPPSSMP-GGGGYPESGHYGLSSSAGYPGQHHQ 404

Query: 421 QAGASPAPRVPPGGLYPNIPPYY 436
             G SP PRVP GG+YPN PP Y
Sbjct: 421 AVGTSPVPRVPHGGMYPNGPPNY 404

[Close]

BLAST of CmaCh16G004220 vs. Swiss-Prot
Match: UBA2B_ARATH (UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.7e-39
Identity = 134/367 (36.51%), Postives = 184/367 (50.14%), Query Frame = 1


Query: 27  EDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLFIRGLSCDTSTEGL 86
           E    +++ F+ DQL+ +L++A  RH DV + +R +AD D+  RK+F+ GL  DT  + L
Sbjct: 85  EPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSL 144

Query: 87  RSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSKTIDGRVTVTQLAA 146
              F  YGE+E+   ++DKV+G+SKGYGF+ FK   G+  ALK+P K I  R+T  QLA+
Sbjct: 145 IDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLAS 204

Query: 147 VG--------VSGQSSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEEGPLGFDKQ 206
           +G           Q  N  ++  RKIYV+NV  D+   KLL  FS +GEIEEGPLG DK 
Sbjct: 205 IGPVQGNPVVAPAQHFNPENVQ-RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKA 264

Query: 207 TGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYANDGKKGKPGGGTDGIQTTGAG 266
           TG+ +G+ALFVY+  E A+ AL +P K  +G  L C  ANDG K                
Sbjct: 265 TGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPK--------------QV 324

Query: 267 QGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSY-GGFSGGPQGAQPLGHHPLNSSM---- 326
           + + H                  YG PGG G +  G +   Q   P     L + +    
Sbjct: 325 KQHQHNHNSHNQNSRYQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPAIGQALTALLASQG 384

Query: 327 -GPGISSVGSQAL---SSQGSSGGYGGGPYG-GGYGGPGSSIYGGMGSVG---GGLGSSG 373
            G G++    QAL       S G  GG P G G        +Y G G+     GG  +  
Sbjct: 385 AGLGLNQAFGQALLGTLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQAGYQGGYQTQQ 436

[Close]

BLAST of CmaCh16G004220 vs. Swiss-Prot
Match: UBA2A_ARATH (UBP1-associated protein 2A OS=Arabidopsis thaliana GN=UBA2A PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-37
Identity = 139/403 (34.49%), Postives = 195/403 (48.39%), Query Frame = 1


Query: 27  EDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLFIRGLSCDTSTEGL 86
           E  + +++ F+ +Q++ +L++A  +HVDV + +R +AD D   RK+F+ GL  DT TE L
Sbjct: 97  EPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETL 156

Query: 87  RSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSKTIDGRVTVTQL-- 146
              F  YGE+E+   + DK++GKSKGYGF+ +K   G+  ALK+P K I  R+T  QL  
Sbjct: 157 IEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLAS 216

Query: 147 ------------AAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEEGP 206
                       AAV    Q SN ++ + +KIYV+NV  ++   KLL  FS +GEIEEGP
Sbjct: 217 KGPVFGGAPIAAAAVSAPAQHSN-SEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGP 276

Query: 207 LGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYANDGKKGKPGGGTDGI 266
           LG DK TG+ +G+ LFVYK +E A+ AL +P K  +G  L C+ A DG   KPG      
Sbjct: 277 LGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGP--KPG------ 336

Query: 267 QTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQGAQPLGHHPLNSS 326
                 Q   H +      P         YG PGG G     +G P G        +N +
Sbjct: 337 -----KQQQHHHNPHAYNNPRYQRNDNNGYGPPGGHGHL--MAGNPAGMGGPTAQVINPA 396

Query: 327 MGPGIS--------------SVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVG 386
           +G  ++              ++G   L S G++ G      G G G P    YG      
Sbjct: 397 IGQALTALLASQGAGLAFNPAIGQALLGSLGTAAGVNP---GNGVGMPTG--YGTQAMAP 456

Query: 387 G---GLGSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHY 399
           G   G G+  G  GG       Y+  Q   G  S G    G Y
Sbjct: 457 GTMPGYGTQPGLQGG-------YQTPQPGQGGTSRGQHGVGPY 471

[Close]

BLAST of CmaCh16G004220 vs. Swiss-Prot
Match: UBA1A_ARATH (UBP1-associated proteins 1A OS=Arabidopsis thaliana GN=UBA1A PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-23
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 1


Query: 15  DSSD-HSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLF 74
           DSSD  S +   PE+ R+++  ++ DQL+D++  A      +  AV   ADRDV+ RK+F
Sbjct: 48  DSSDSESDNEFDPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIF 107

Query: 75  IRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSK 134
           + GL  +T+ E L  +F  YGE+EE  V+IDK TGK+KG+GFV FK   G+  ALKEP K
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKK 167

Query: 135 TIDGRVTVTQLAAVG 149
            I  R    QLA++G
Sbjct: 168 RILNRTATCQLASMG 182

[Close]

BLAST of CmaCh16G004220 vs. Swiss-Prot
Match: ROA0_HUMAN (Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.0e-22
Identity = 109/338 (32.25%), Postives = 153/338 (45.27%), Query Frame = 1


Query: 71  KLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKE 130
           KLFI GL+  TS  GLR  F A+G L + VV+++  T +S+ +GFVT+ +V+ +  A+  
Sbjct: 8   KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67

Query: 131 PSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEE 190
               +DG  TV    AV     +   A   ++K++V  +  D+    L+ HFS +G +E+
Sbjct: 68  SPHAVDGN-TVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEK 127

Query: 191 GPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYANDGKKGKPGGGTD 250
             +  DKQ+GK RG+    ++  + A  A V     I G ++  K A   +    GGG  
Sbjct: 128 AEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGG 187

Query: 251 GIQTTGAGQGNL-HGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQGAQPLGHHPL 310
           G +++  G+G    G G           +G   GG GG  SYGG+ GG  G         
Sbjct: 188 GSRSSRGGRGGRGRGGGRDQ--------NGLSKGGGGGYNSYGGYGGGGGG--------- 247

Query: 311 NSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGPGS-----SIYGGMGSVGGGLGSS 370
                      G  A    G    YGG  YG G+GG GS     S YG M S GGG G  
Sbjct: 248 -----------GYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGG-GGG 304

Query: 371 GGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSS 403
           G   GG           +S+ G   GGY   G Y  SS
Sbjct: 308 GSSWGG-----------RSNSGPYRGGYGGGGGYGGSS 304

[Close]

BLAST of CmaCh16G004220 vs. TrEMBL
Match: A0A0A0KYY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083660 PE=4 SV=1)

HSP 1 Score: 763.1 bits (1969), Expect = 1.9e-217
Identity = 399/435 (91.72%), Postives = 413/435 (94.94%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVR 60
           MDVTKKRRMDENGVDSS+ SFSRITPEDARKIIDRFTPDQLIDILQDAVSRH+DVLDAVR
Sbjct: 1   MDVTKKRRMDENGVDSSESSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHLDVLDAVR 60

Query: 61  CIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKH 120
            IADRDVSQRKLFIRGLSCDTSTEGLRSLFS+YGELEEAVVIIDK TGKSKGYGFVTFKH
Sbjct: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSSYGELEEAVVIIDKATGKSKGYGFVTFKH 120

Query: 121 VDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLA 180
           VDG++LALKEPSKTIDGRVTVTQLAAVG+SGQ+SNAADLSLRKIYVANVPMDMPADKLLA
Sbjct: 121 VDGALLALKEPSKTIDGRVTVTQLAAVGISGQNSNAADLSLRKIYVANVPMDMPADKLLA 180

Query: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYANDG 240
           HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKK EGAQAALVDPIK IDGRQLSCK+ANDG
Sbjct: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240

Query: 241 KKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQG 300
           KKGKPGGG DG QT GAGQGN+HGDGMPMAPPSA+PGSGGQYGGPGGMGSYGGFS G QG
Sbjct: 241 KKGKPGGGPDGNQTQGAGQGNVHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSGLQG 300

Query: 301 AQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVGGG 360
           AQPL HHPLNSSMGPG+SSVG QA SS GSSGGYGGGPYGGGYGGPG SIYGGMGSVGGG
Sbjct: 301 AQPLAHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPG-SIYGGMGSVGGG 360

Query: 361 LGSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSSASGHPNHHHQQAGASPAP 420
           LG SGGGLGGAG  SSLYRL QSSVG+PSGGYPDSGHYSMSSASGHPN HHQ AG SPAP
Sbjct: 361 LGGSGGGLGGAGGASSLYRLPQSSVGMPSGGYPDSGHYSMSSASGHPNQHHQPAGTSPAP 420

Query: 421 RVPPGGLYPNIPPYY 436
           RVPPGG+YPN+PPYY
Sbjct: 421 RVPPGGMYPNVPPYY 434

[Close]

BLAST of CmaCh16G004220 vs. TrEMBL
Match: M5WGI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005857mg PE=4 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 1.0e-154
Identity = 318/452 (70.35%), Postives = 360/452 (79.65%), Query Frame = 1


Query: 1   MDVTKKRRMDENGV--DSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDA 60
           MD +KKR++DENGV  D+   S  +++PEDARK+I+RF PDQLIDILQDAV+RHVDVLDA
Sbjct: 1   MDPSKKRKLDENGVVLDTDPSSIPKLSPEDARKLIERFNPDQLIDILQDAVTRHVDVLDA 60

Query: 61  VRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTF 120
           VR IAD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEA+VI+DKVTGKS+GYGFVTF
Sbjct: 61  VRSIADLDASQRKLFIRGLGWDTTTEGLRALFSAYGELEEAIVILDKVTGKSRGYGFVTF 120

Query: 121 KHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQ---SSNAADLSLRKIYVANVPMDMPA 180
           +HVDG++LALKEPSK IDGR+TVTQLAA G S     S+NAAD+SLRKIYVANVP DMPA
Sbjct: 121 RHVDGALLALKEPSKKIDGRMTVTQLAAAGNSSSNVSSNNAADVSLRKIYVANVPYDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCK 240
           DKLLAHFS YGEIEEGPLGFDKQTGKC+GYALFVYK  EGAQAALVDP+K I+GRQL+CK
Sbjct: 181 DKLLAHFSFYGEIEEGPLGFDKQTGKCKGYALFVYKTPEGAQAALVDPVKNIEGRQLTCK 240

Query: 241 YANDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFS 300
            A DGKKGKP G   G Q  G+G  N HGDGM +A PS+I    GQYGGPGG+GSYGGFS
Sbjct: 241 LAIDGKKGKPDGPGQG-QGPGSGP-NAHGDGMGLAQPSSI---AGQYGGPGGIGSYGGFS 300

Query: 301 GGPQGAQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYG---GGPYGGGYGGPGSSIYG 360
           GG QG  PLGHHPL    GPG+SSVG+Q  S  G+ GGYG   GGPYG  YGGPGS  YG
Sbjct: 301 GGHQGPPPLGHHPLG---GPGLSSVGNQVNSGLGAGGGYGAGLGGPYGN-YGGPGSVGYG 360

Query: 361 -----GMGSVGGGLG--SSGGGL--GGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSSA 420
                G+G  GGGLG  +SGGG   GG G  SSLY L+ SS G+PS  +P+SGHY +SS 
Sbjct: 361 LGGTGGLGGAGGGLGGAASGGGAPGGGVGTGSSLYGLAPSSAGLPSSRFPESGHYGLSS- 420

Query: 421 SGHPNHHHQQAGASPAPRVPPGGLYPNIPPYY 436
             + N HHQQAG SP PRVPPGG+YPN+PPYY
Sbjct: 421 --YQNQHHQQAGTSPMPRVPPGGMYPNVPPYY 440

[Close]

BLAST of CmaCh16G004220 vs. TrEMBL
Match: A5ADJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g01570 PE=4 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 1.8e-143
Identity = 307/457 (67.18%), Postives = 354/457 (77.46%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSD-HSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAV 60
           MD TKKR+MDENG+ S+D  S +++ PEDARKII+ F  DQL++ILQ+A  RH+DVLDA+
Sbjct: 1   MDATKKRKMDENGLVSTDGDSLTKLAPEDARKIIEPFGHDQLLEILQNAAVRHLDVLDAI 60

Query: 61  RCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFK 120
           R IADRD++QRKLFIRGL  DT+TEGLR LFSAYGELEEAVVI+DKVT KSKGYGFVTFK
Sbjct: 61  RSIADRDLTQRKLFIRGLGWDTTTEGLRQLFSAYGELEEAVVILDKVTAKSKGYGFVTFK 120

Query: 121 HVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAA--DLSLRKIYVANVPMDMPADK 180
           HVDG++LALKEPSK IDGR+TVTQLAA G+SG +SNA+  D+S+RKIYVANVP+DMPAD+
Sbjct: 121 HVDGALLALKEPSKKIDGRMTVTQLAASGLSGPASNASAVDVSMRKIYVANVPVDMPADR 180

Query: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYA 240
           LLAHFS YGEIEEGPLGFDKQTGK RG+ALFVYK AE AQAALVDP K IDGRQL CK A
Sbjct: 181 LLAHFSSYGEIEEGPLGFDKQTGKSRGFALFVYKTAEAAQAALVDPTKMIDGRQLVCKLA 240

Query: 241 NDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGS-GGQY-GGPGGMGSYGGFS 300
            +GKKGK GG       TG      HGDG+ + P  ++PGS G QY GGPGG+ +YGGFS
Sbjct: 241 IEGKKGKTGGPAQA--PTGVPGEAGHGDGLGVPPQGSMPGSLGSQYPGGPGGISAYGGFS 300

Query: 301 GGPQGAQPLG-HHPLNSSM------GPGISSVGSQALSSQGSSGGYG---GGPYGGG-YG 360
           GGP    PLG HHPLNSS+      GPG+S   SQ  SS G S GYG   GGPYG   YG
Sbjct: 301 GGP---PPLGHHHPLNSSLPSSLGGGPGLS---SQVPSSLGGSAGYGAGLGGPYGSAHYG 360

Query: 361 GPGSSIY------GGMGSVGGGLGSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHY 420
           GP S+ Y      GG+G   G LG +GG LG AG  SSLYRL  S+VG+PSGGYPDSGHY
Sbjct: 361 GPNSAGYSGLGGAGGLGGAAGALGVAGGALGVAGGGSSLYRLPPSTVGMPSGGYPDSGHY 420

Query: 421 SMSSASGHPNHHHQQAGASPAPRVPPGGLYPNIPPYY 436
           S+SS+S +P+  HQ AG SP PRVPPGG+YP+ PPYY
Sbjct: 421 SLSSSSAYPSQIHQPAGTSPVPRVPPGGMYPSGPPYY 449

[Close]

BLAST of CmaCh16G004220 vs. TrEMBL
Match: A0A0D2U197_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G372200 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 1.6e-136
Identity = 289/451 (64.08%), Postives = 336/451 (74.50%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSS---DHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLD 60
           MD TKKR++DENG+ S+       +++TP+D RK+I+RFT DQL+DILQDAV RH DVL 
Sbjct: 4   MDPTKKRKLDENGIISAVSEPDPITKLTPQDGRKLIERFTVDQLLDILQDAVCRHFDVLS 63

Query: 61  AVRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVT 120
           AVR IAD+D SQRKLFIRGL  DT+T+GLRSLFS YGELEEAVVI+DK TGKSKGYGFVT
Sbjct: 64  AVRSIADQDPSQRKLFIRGLGWDTTTDGLRSLFSVYGELEEAVVILDKATGKSKGYGFVT 123

Query: 121 FKHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPADK 180
           FKHVDG++LALKEPSK IDGRVTVTQLAA G SG ++N  D+ +RKIYVANVP DMPADK
Sbjct: 124 FKHVDGALLALKEPSKKIDGRVTVTQLAAAGNSGTNTNPVDVHMRKIYVANVPYDMPADK 183

Query: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYA 240
           LL HF+ YGEIEEGPLGFDKQTGK +G+ALFVYK AEGAQ+ALV+P+K IDGRQL+CK A
Sbjct: 184 LLGHFAQYGEIEEGPLGFDKQTGKSKGFALFVYKTAEGAQSALVEPVKNIDGRQLNCKLA 243

Query: 241 NDGKKGKPGGGTDGIQTTGAG-QGNLHGDGMPMAPPSAIPGSGGQY------GGPGGMGS 300
            +GKKGKP  G DG+  +G G  GN             + G GG Y      GGPGGMG 
Sbjct: 244 IEGKKGKP--GQDGMMQSGVGAAGNTE---------MGVGGHGGGYGGHVGPGGPGGMGG 303

Query: 301 YGGFSGGPQGAQ-PLGH-HPLNSSMGPGISSVGSQALSSQG--SSGGYGGGPYG--GGYG 360
           YGGF GG QG   P+GH H LNS      S VG  ALS  G  + GGYG G  G  GGYG
Sbjct: 304 YGGFPGGLQGPPGPMGHPHHLNS------SGVGVGALSGSGGAAGGGYGSGLSGPYGGYG 363

Query: 361 GPGSSIYGGMGSVGGGLGSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSSAS 420
           GPGS+ YGG+   G G+G SG  LG     SSLYR+  +SVG+PSGGYP++ HYS+SSA+
Sbjct: 364 GPGSTGYGGLTGAGAGVGLSGAALG-----SSLYRMPPNSVGMPSGGYPETAHYSLSSAA 423

Query: 421 GHPNHHHQQAGASPAPRVPPGGLYPNIPPYY 436
             P+ HHQ AG SP PRVPPGG+YPN PP+Y
Sbjct: 424 AFPSQHHQGAGTSPVPRVPPGGMYPNGPPFY 432

[Close]

BLAST of CmaCh16G004220 vs. TrEMBL
Match: A0A0D2R1K1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G063400 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 8.1e-136
Identity = 293/454 (64.54%), Postives = 337/454 (74.23%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHS---FSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLD 60
           MD TKKR++DENG  S+       +++TP+D RK+I+RFT DQL+DILQDAV RHVDVL 
Sbjct: 4   MDPTKKRKLDENGTVSAQSEPDPITKLTPQDGRKLIERFTVDQLLDILQDAVCRHVDVLS 63

Query: 61  AVRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVT 120
           AVR IAD+D SQRKLFIRGL  DT+T+GLRSLFS YGELEEAVVI+DK TGKSKGYGFVT
Sbjct: 64  AVRSIADQDPSQRKLFIRGLGWDTTTDGLRSLFSVYGELEEAVVILDKTTGKSKGYGFVT 123

Query: 121 FKHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPADK 180
           FKHVDG++LALKEPSK IDGRVTVTQLAA G S  +SN  D+ +RKIYVANVP DMPADK
Sbjct: 124 FKHVDGALLALKEPSKKIDGRVTVTQLAAAGNSATNSNPVDIHMRKIYVANVPYDMPADK 183

Query: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYA 240
           LL HFS YGEIEEGPLGFDKQTGK RG+ALFVYK AEGAQAAL +P+K IDGRQ++CK A
Sbjct: 184 LLGHFSQYGEIEEGPLGFDKQTGKSRGFALFVYKTAEGAQAALAEPVKNIDGRQMNCKLA 243

Query: 241 NDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGG 300
            +GKKGK   G DG+  +G G            P +A  G GG  GG GG G YGGFSGG
Sbjct: 244 IEGKKGKQ--GQDGMMQSGGG-----------VPGNAEMGMGGHGGGYGGPGGYGGFSGG 303

Query: 301 PQGAQ-PLGH-HPLNSSMGPGISSVGSQALSSQG--SSGGYG--GGPYGG-------GYG 360
            QG   P+GH HPLNS      S VG  ALS  G  ++GGY   GGPYGG       GYG
Sbjct: 304 MQGPPGPMGHPHPLNS------SGVGVGALSGNGGVAAGGYSGLGGPYGGYGGQGSTGYG 363

Query: 361 GPGSSIYGGMGS-VGGGL--GSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMS 420
           GPGS+ YGG GS V GGL    +GGGLG A   SSLYR+  SS G+P+GGYP++ HYS+S
Sbjct: 364 GPGSAGYGGPGSTVYGGLTGAGAGGGLGAASGGSSLYRMPPSSAGMPTGGYPETAHYSLS 423

Query: 421 SASGHPNHHHQQAGASPAPRVPPGGLYPNIPPYY 436
           S++  P+  HQ AG SPAPRVPPG +YPN PP+Y
Sbjct: 424 SSAAFPSQLHQGAGTSPAPRVPPGAMYPNGPPFY 438

[Close]

BLAST of CmaCh16G004220 vs. TAIR10
Match: AT3G15010.1 (AT3G15010.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 449.5 bits (1155), Expect = 2.3e-126
Identity = 262/443 (59.14%), Postives = 318/443 (71.78%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSF-----SRITPEDARKIIDRFTPDQLIDILQDAVSRHVDV 60
           MD+ KKR++DENG   + +       +R++P+DARKII+RFT DQL+D+LQ+A+ RH DV
Sbjct: 1   MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60

Query: 61  LDAVRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGF 120
           L++VR  AD D+SQRKLFIRGL+ DT+TEGLRSLFS+YG+LEEA+VI+DKVTGKSKGYGF
Sbjct: 61  LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120

Query: 121 VTFKHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPA 180
           VTF HVDG++LALKEPSK IDGRVTVTQLAA G  G  S  AD+S+RKIYVANVP DMPA
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCK 240
           D+LL HF  YG++EEGPLGFDK TGK RG+ALFVYK AEGAQAAL DP+K IDG+ L+CK
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCK 240

Query: 241 YANDGKK-GKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGF 300
            A DGKK GKP  G    Q  G+G G++HG+GM M  P+      G YG  GG+ +YGG+
Sbjct: 241 LAVDGKKGGKP--GMPQAQDGGSGHGHVHGEGMGMVRPA------GPYGAAGGISAYGGY 300

Query: 301 SGGPQGAQPLGH-HPLNSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGP-GSSIYG 360
           SGGP    P  H +  +SSMG G              S GYGG  + GGYGGP G+ +YG
Sbjct: 301 SGGP----PAHHMNSTHSSMGVG--------------SAGYGG--HYGGYGGPGGTGVYG 360

Query: 361 GMGSVGGGLGSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSSASGHPNHHHQ 420
           G+          GGG GG G  S  YR+  SS+    GGYP+SGHY +SS++G+P  HHQ
Sbjct: 361 GL----------GGGYGGPGTGSGQYRMPPSSMP-GGGGYPESGHYGLSSSAGYPGQHHQ 404

Query: 421 QAGASPAPRVPPGGLYPNIPPYY 436
             G SP PRVP GG+YPN PP Y
Sbjct: 421 AVGTSPVPRVPHGGMYPNGPPNY 404

[Close]

BLAST of CmaCh16G004220 vs. TAIR10
Match: AT2G41060.1 (AT2G41060.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-40
Identity = 134/367 (36.51%), Postives = 184/367 (50.14%), Query Frame = 1


Query: 27  EDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLFIRGLSCDTSTEGL 86
           E    +++ F+ DQL+ +L++A  RH DV + +R +AD D+  RK+F+ GL  DT  + L
Sbjct: 85  EPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSL 144

Query: 87  RSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSKTIDGRVTVTQLAA 146
              F  YGE+E+   ++DKV+G+SKGYGF+ FK   G+  ALK+P K I  R+T  QLA+
Sbjct: 145 IDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLAS 204

Query: 147 VG--------VSGQSSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEEGPLGFDKQ 206
           +G           Q  N  ++  RKIYV+NV  D+   KLL  FS +GEIEEGPLG DK 
Sbjct: 205 IGPVQGNPVVAPAQHFNPENVQ-RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKA 264

Query: 207 TGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYANDGKKGKPGGGTDGIQTTGAG 266
           TG+ +G+ALFVY+  E A+ AL +P K  +G  L C  ANDG K                
Sbjct: 265 TGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPK--------------QV 324

Query: 267 QGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSY-GGFSGGPQGAQPLGHHPLNSSM---- 326
           + + H                  YG PGG G +  G +   Q   P     L + +    
Sbjct: 325 KQHQHNHNSHNQNSRYQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPAIGQALTALLASQG 384

Query: 327 -GPGISSVGSQAL---SSQGSSGGYGGGPYG-GGYGGPGSSIYGGMGSVG---GGLGSSG 373
            G G++    QAL       S G  GG P G G        +Y G G+     GG  +  
Sbjct: 385 AGLGLNQAFGQALLGTLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQAGYQGGYQTQQ 436

[Close]

BLAST of CmaCh16G004220 vs. TAIR10
Match: AT3G56860.3 (AT3G56860.3 UBP1-associated protein 2A)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-38
Identity = 139/403 (34.49%), Postives = 195/403 (48.39%), Query Frame = 1


Query: 27  EDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLFIRGLSCDTSTEGL 86
           E  + +++ F+ +Q++ +L++A  +HVDV + +R +AD D   RK+F+ GL  DT TE L
Sbjct: 97  EPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETL 156

Query: 87  RSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSKTIDGRVTVTQL-- 146
              F  YGE+E+   + DK++GKSKGYGF+ +K   G+  ALK+P K I  R+T  QL  
Sbjct: 157 IEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLAS 216

Query: 147 ------------AAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEEGP 206
                       AAV    Q SN ++ + +KIYV+NV  ++   KLL  FS +GEIEEGP
Sbjct: 217 KGPVFGGAPIAAAAVSAPAQHSN-SEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGP 276

Query: 207 LGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYANDGKKGKPGGGTDGI 266
           LG DK TG+ +G+ LFVYK +E A+ AL +P K  +G  L C+ A DG   KPG      
Sbjct: 277 LGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGP--KPG------ 336

Query: 267 QTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQGAQPLGHHPLNSS 326
                 Q   H +      P         YG PGG G     +G P G        +N +
Sbjct: 337 -----KQQQHHHNPHAYNNPRYQRNDNNGYGPPGGHGHL--MAGNPAGMGGPTAQVINPA 396

Query: 327 MGPGIS--------------SVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVG 386
           +G  ++              ++G   L S G++ G      G G G P    YG      
Sbjct: 397 IGQALTALLASQGAGLAFNPAIGQALLGSLGTAAGVNP---GNGVGMPTG--YGTQAMAP 456

Query: 387 G---GLGSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHY 399
           G   G G+  G  GG       Y+  Q   G  S G    G Y
Sbjct: 457 GTMPGYGTQPGLQGG-------YQTPQPGQGGTSRGQHGVGPY 471

[Close]

BLAST of CmaCh16G004220 vs. TAIR10
Match: AT2G22090.2 (AT2G22090.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 112.1 bits (279), Expect = 8.8e-25
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 1


Query: 15  DSSD-HSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRCIADRDVSQRKLF 74
           DSSD  S +   PE+ R+++  ++ DQL+D++  A      +  AV   ADRDV+ RK+F
Sbjct: 48  DSSDSESDNEFDPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIF 107

Query: 75  IRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHVDGSILALKEPSK 134
           + GL  +T+ E L  +F  YGE+EE  V+IDK TGK+KG+GFV FK   G+  ALKEP K
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKK 167

Query: 135 TIDGRVTVTQLAAVG 149
            I  R    QLA++G
Sbjct: 168 RILNRTATCQLASMG 182

[Close]

BLAST of CmaCh16G004220 vs. TAIR10
Match: AT2G19380.1 (AT2G19380.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 102.1 bits (253), Expect = 9.1e-22
Identity = 85/289 (29.41%), Postives = 139/289 (48.10%), Query Frame = 1


Query: 2   DVTKKRRMDENGVDSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVRC 61
           D  KKR+ D+     SD  F     ED ++++  ++ ++L++++     +   ++ A+  
Sbjct: 342 DKEKKRKKDKKQT-KSDSDFEH-DKEDIKQLLVAYSKEELVNLIYKTAEKGSRLISAILE 401

Query: 62  IADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKHV 121
            ADRD++QR +F+RG   DT+ E L++ F +YGE+EE  V++DK TG+ KGYGFV FK  
Sbjct: 402 SADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTR 461

Query: 122 DGSILALKEPSKTIDGRVTVTQLAA--VGVSGQSSNAADLSLRKIYVANVPMDMPADKLL 181
            G+  ALK P K +  R+ V  LA+   G +G+  + A+     + +    M   ++ +L
Sbjct: 462 KGAREALKRPEKRMYNRIVVCNLASEKPGKAGKEQDMAE----PVNIDLTKMANQSEAVL 521

Query: 182 AHFSL-YGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPI-KAIDGRQLSCKYA 241
               L  G + E      +QT    G  +  Y  +   Q    DP+  A+ G Q+     
Sbjct: 522 PGIELGRGHVLEKMHHQQQQTMDMFGQNMPFYGYSH--QFPGFDPMYGALSGNQMLAGLP 581

Query: 242 NDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPG 287
           N G                 G G +   G  + PP+ + G  GQY G G
Sbjct: 582 NYGM---------------FGSGMMTNQGSMLPPPNHL-GMAGQYFGDG 606

[Close]

BLAST of CmaCh16G004220 vs. NCBI nr
Match: gi|449438887|ref|XP_004137219.1| (PREDICTED: UBP1-associated protein 2C [Cucumis sativus])

HSP 1 Score: 763.1 bits (1969), Expect = 2.7e-217
Identity = 399/435 (91.72%), Postives = 413/435 (94.94%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVR 60
           MDVTKKRRMDENGVDSS+ SFSRITPEDARKIIDRFTPDQLIDILQDAVSRH+DVLDAVR
Sbjct: 1   MDVTKKRRMDENGVDSSESSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHLDVLDAVR 60

Query: 61  CIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKH 120
            IADRDVSQRKLFIRGLSCDTSTEGLRSLFS+YGELEEAVVIIDK TGKSKGYGFVTFKH
Sbjct: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSSYGELEEAVVIIDKATGKSKGYGFVTFKH 120

Query: 121 VDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLA 180
           VDG++LALKEPSKTIDGRVTVTQLAAVG+SGQ+SNAADLSLRKIYVANVPMDMPADKLLA
Sbjct: 121 VDGALLALKEPSKTIDGRVTVTQLAAVGISGQNSNAADLSLRKIYVANVPMDMPADKLLA 180

Query: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYANDG 240
           HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKK EGAQAALVDPIK IDGRQLSCK+ANDG
Sbjct: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240

Query: 241 KKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQG 300
           KKGKPGGG DG QT GAGQGN+HGDGMPMAPPSA+PGSGGQYGGPGGMGSYGGFS G QG
Sbjct: 241 KKGKPGGGPDGNQTQGAGQGNVHGDGMPMAPPSAMPGSGGQYGGPGGMGSYGGFSSGLQG 300

Query: 301 AQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVGGG 360
           AQPL HHPLNSSMGPG+SSVG QA SS GSSGGYGGGPYGGGYGGPG SIYGGMGSVGGG
Sbjct: 301 AQPLAHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPG-SIYGGMGSVGGG 360

Query: 361 LGSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSSASGHPNHHHQQAGASPAP 420
           LG SGGGLGGAG  SSLYRL QSSVG+PSGGYPDSGHYSMSSASGHPN HHQ AG SPAP
Sbjct: 361 LGGSGGGLGGAGGASSLYRLPQSSVGMPSGGYPDSGHYSMSSASGHPNQHHQPAGTSPAP 420

Query: 421 RVPPGGLYPNIPPYY 436
           RVPPGG+YPN+PPYY
Sbjct: 421 RVPPGGMYPNVPPYY 434

[Close]

BLAST of CmaCh16G004220 vs. NCBI nr
Match: gi|659101647|ref|XP_008451717.1| (PREDICTED: UBP1-associated protein 2C [Cucumis melo])

HSP 1 Score: 757.7 bits (1955), Expect = 1.1e-215
Identity = 396/435 (91.03%), Postives = 412/435 (94.71%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVR 60
           MDVTKKRRMDENGVDSS++SFSRITPEDARKIIDRFTPDQLIDILQDAVSRH+DVL+AVR
Sbjct: 1   MDVTKKRRMDENGVDSSENSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHLDVLEAVR 60

Query: 61  CIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKH 120
            IADRDVSQRKLFIRGLSCDTSTEGLRSLFS+YGELEEAVVIIDK TGKSKGYGFVTFKH
Sbjct: 61  SIADRDVSQRKLFIRGLSCDTSTEGLRSLFSSYGELEEAVVIIDKATGKSKGYGFVTFKH 120

Query: 121 VDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSNAADLSLRKIYVANVPMDMPADKLLA 180
           VDG++LALKEPSKTIDGRVTVTQLAAVG+SGQ+SNAADLSLRKIYVANVPMDMPADKLLA
Sbjct: 121 VDGALLALKEPSKTIDGRVTVTQLAAVGISGQNSNAADLSLRKIYVANVPMDMPADKLLA 180

Query: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYANDG 240
           HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKK EGAQAALVDPIK IDGRQLSCK+ANDG
Sbjct: 181 HFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFANDG 240

Query: 241 KKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFSGGPQG 300
           KKGKPGGG DG QT GAGQGN+HGDGMPMAPPSA+PGSG QYGGPGGMGSY GFS G QG
Sbjct: 241 KKGKPGGGPDGNQTQGAGQGNVHGDGMPMAPPSAMPGSGAQYGGPGGMGSYAGFSSGLQG 300

Query: 301 AQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYGGGPYGGGYGGPGSSIYGGMGSVGGG 360
           AQPL HHPLNSSMGPG+SSVG QA SS GSSGGYGGGPYGGGYGGPG SIYGGMGSVGGG
Sbjct: 301 AQPLAHHPLNSSMGPGLSSVGGQAPSSLGSSGGYGGGPYGGGYGGPG-SIYGGMGSVGGG 360

Query: 361 LGSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSSASGHPNHHHQQAGASPAP 420
           LG SGGGLGGAG  SSLYRL QSSVG+PSGGYPDSGHYSMSSASGHPN HHQ AG SPAP
Sbjct: 361 LGGSGGGLGGAGGASSLYRLPQSSVGMPSGGYPDSGHYSMSSASGHPNQHHQPAGTSPAP 420

Query: 421 RVPPGGLYPNIPPYY 436
           RVPPGG+YPN+PPYY
Sbjct: 421 RVPPGGMYPNVPPYY 434

[Close]

BLAST of CmaCh16G004220 vs. NCBI nr
Match: gi|1009161987|ref|XP_015899190.1| (PREDICTED: UBP1-associated protein 2C [Ziziphus jujuba])

HSP 1 Score: 589.3 bits (1518), Expect = 5.3e-165
Identity = 329/453 (72.63%), Postives = 372/453 (82.12%), Query Frame = 1


Query: 1   MDVTKKRRMDENGVDSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDAVR 60
           MD+TKKR+M+ENG   +D S  ++TPEDARKII+RFTPDQLI+ILQ+AV+ H DVL+AVR
Sbjct: 1   MDLTKKRKMEENGAGDADPSVLKLTPEDARKIIERFTPDQLIEILQEAVAHHADVLEAVR 60

Query: 61  CIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTFKH 120
            +AD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEAVVI+DK TGKSKGYGFVTF+H
Sbjct: 61  SVADPDTSQRKLFIRGLGWDTTTEGLRALFSAYGELEEAVVILDKTTGKSKGYGFVTFRH 120

Query: 121 VDGSILALKEPSKTIDGRVTVTQLAAVGVSGQSSN---AADLSLRKIYVANVPMDMPADK 180
           VDG++LALKEPSK IDGR+TVTQLAA G SG ++N   A D+SLRKIYVANVP DMPADK
Sbjct: 121 VDGALLALKEPSKKIDGRMTVTQLAAAGNSGANTNSNAAVDVSLRKIYVANVPYDMPADK 180

Query: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCKYA 240
           LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYK  EGAQAALVDP+K I+GRQL+CK A
Sbjct: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKTPEGAQAALVDPVKTIEGRQLTCKLA 240

Query: 241 NDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGS-GGQYGGPGGMGSYGGFSG 300
            DGKKGK G G DGIQ    G GN HGDGM +APPS++PGS GGQYGGP G+GSYGGFSG
Sbjct: 241 IDGKKGKQGSGADGIQAPVGGPGNAHGDGMGLAPPSSMPGSIGGQYGGPAGIGSYGGFSG 300

Query: 301 GPQGAQPLGHHPLNSSM-GPGISSVGSQALSSQGSSGGYG---GGPYGGGYGGPGSSIYG 360
           G QG  P+GHHPLNSS+ GPG+SSVG+QA SS G +GGYG   GGPY GGYGGPGS+ +G
Sbjct: 301 GLQG-PPMGHHPLNSSIGGPGLSSVGNQAPSSLGGAGGYGSGLGGPY-GGYGGPGSAGFG 360

Query: 361 GMGSVG----------GGLGSSGGGLGGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSS 420
           G+GS G          GGLG +GGG GG G  SSLYRL  SS GIPS GYPD+GHY+MSS
Sbjct: 361 GLGSGGAGGGLAGSAAGGLGGAGGGAGGGGG-SSLYRLPPSSGGIPSSGYPDTGHYNMSS 420

Query: 421 ASGHPNHHHQQAGASPAPRVPPGGLYPNIPPYY 436
           +S +   HHQ AG SP PRVPPGG+YP  PPYY
Sbjct: 421 SSAYQGQHHQPAGTSPVPRVPPGGMYP--PPYY 448

[Close]

BLAST of CmaCh16G004220 vs. NCBI nr
Match: gi|595863695|ref|XP_007211635.1| (hypothetical protein PRUPE_ppa005857mg [Prunus persica])

HSP 1 Score: 554.7 bits (1428), Expect = 1.5e-154
Identity = 318/452 (70.35%), Postives = 360/452 (79.65%), Query Frame = 1


Query: 1   MDVTKKRRMDENGV--DSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDA 60
           MD +KKR++DENGV  D+   S  +++PEDARK+I+RF PDQLIDILQDAV+RHVDVLDA
Sbjct: 1   MDPSKKRKLDENGVVLDTDPSSIPKLSPEDARKLIERFNPDQLIDILQDAVTRHVDVLDA 60

Query: 61  VRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTF 120
           VR IAD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEA+VI+DKVTGKS+GYGFVTF
Sbjct: 61  VRSIADLDASQRKLFIRGLGWDTTTEGLRALFSAYGELEEAIVILDKVTGKSRGYGFVTF 120

Query: 121 KHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQ---SSNAADLSLRKIYVANVPMDMPA 180
           +HVDG++LALKEPSK IDGR+TVTQLAA G S     S+NAAD+SLRKIYVANVP DMPA
Sbjct: 121 RHVDGALLALKEPSKKIDGRMTVTQLAAAGNSSSNVSSNNAADVSLRKIYVANVPYDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCK 240
           DKLLAHFS YGEIEEGPLGFDKQTGKC+GYALFVYK  EGAQAALVDP+K I+GRQL+CK
Sbjct: 181 DKLLAHFSFYGEIEEGPLGFDKQTGKCKGYALFVYKTPEGAQAALVDPVKNIEGRQLTCK 240

Query: 241 YANDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFS 300
            A DGKKGKP G   G Q  G+G  N HGDGM +A PS+I    GQYGGPGG+GSYGGFS
Sbjct: 241 LAIDGKKGKPDGPGQG-QGPGSGP-NAHGDGMGLAQPSSI---AGQYGGPGGIGSYGGFS 300

Query: 301 GGPQGAQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYG---GGPYGGGYGGPGSSIYG 360
           GG QG  PLGHHPL    GPG+SSVG+Q  S  G+ GGYG   GGPYG  YGGPGS  YG
Sbjct: 301 GGHQGPPPLGHHPLG---GPGLSSVGNQVNSGLGAGGGYGAGLGGPYGN-YGGPGSVGYG 360

Query: 361 -----GMGSVGGGLG--SSGGGL--GGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSSA 420
                G+G  GGGLG  +SGGG   GG G  SSLY L+ SS G+PS  +P+SGHY +SS 
Sbjct: 361 LGGTGGLGGAGGGLGGAASGGGAPGGGVGTGSSLYGLAPSSAGLPSSRFPESGHYGLSS- 420

Query: 421 SGHPNHHHQQAGASPAPRVPPGGLYPNIPPYY 436
             + N HHQQAG SP PRVPPGG+YPN+PPYY
Sbjct: 421 --YQNQHHQQAGTSPMPRVPPGGMYPNVPPYY 440

[Close]

BLAST of CmaCh16G004220 vs. NCBI nr
Match: gi|645240221|ref|XP_008226506.1| (PREDICTED: UBP1-associated protein 2C [Prunus mume])

HSP 1 Score: 553.5 bits (1425), Expect = 3.2e-154
Identity = 318/452 (70.35%), Postives = 359/452 (79.42%), Query Frame = 1


Query: 1   MDVTKKRRMDENGV--DSSDHSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHVDVLDA 60
           MD +KKR++DENGV  D+   S  +++PEDARK+I+RF PDQLIDILQDAV+RHVDVLDA
Sbjct: 1   MDPSKKRKLDENGVVLDTDPSSIPKLSPEDARKLIERFNPDQLIDILQDAVTRHVDVLDA 60

Query: 61  VRCIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAYGELEEAVVIIDKVTGKSKGYGFVTF 120
           VR IAD D SQRKLFIRGL  DT+TEGLR+LFSAYGELEEA+VI+DKVTGKS+GYGFVTF
Sbjct: 61  VRSIADLDASQRKLFIRGLGWDTTTEGLRALFSAYGELEEAIVILDKVTGKSRGYGFVTF 120

Query: 121 KHVDGSILALKEPSKTIDGRVTVTQLAAVGVSGQ---SSNAADLSLRKIYVANVPMDMPA 180
           +HVDG++LALKEPSK IDGR+TVTQLAA G S     S+NAAD+SLRKIYVANVP DMPA
Sbjct: 121 RHVDGALLALKEPSKKIDGRMTVTQLAAAGNSSSNVSSNNAADVSLRKIYVANVPYDMPA 180

Query: 181 DKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKAIDGRQLSCK 240
           DKLLAHFS YGEIEEGPLGFDKQTGKC+GYALFVYK  EGAQAALVDP+K I+GRQL+CK
Sbjct: 181 DKLLAHFSFYGEIEEGPLGFDKQTGKCKGYALFVYKTPEGAQAALVDPVKNIEGRQLTCK 240

Query: 241 YANDGKKGKPGGGTDGIQTTGAGQGNLHGDGMPMAPPSAIPGSGGQYGGPGGMGSYGGFS 300
            A DGKKGKP G   G Q  G+G  N HGDGM MA PS+I    GQYGGPGG+GSYGGFS
Sbjct: 241 LAIDGKKGKPDGPGQG-QGPGSGP-NAHGDGMGMAQPSSI---AGQYGGPGGIGSYGGFS 300

Query: 301 GGPQGAQPLGHHPLNSSMGPGISSVGSQALSSQGSSGGYG---GGPYGGGYGGPGSSIYG 360
            G QG  PLGHHPL    GPG+SSVG+Q  S  G+ GGYG   GGPYG  YGGPGS  YG
Sbjct: 301 SGHQGPPPLGHHPLG---GPGLSSVGNQVNSGLGAGGGYGAGLGGPYGN-YGGPGSVGYG 360

Query: 361 -----GMGSVGGGLG--SSGGGL--GGAGDVSSLYRLSQSSVGIPSGGYPDSGHYSMSSA 420
                G+G  GGGLG  +SGGG   GG G  SSLY L+ SS G+PS  +P+SGHY +SS 
Sbjct: 361 LGGAGGLGGAGGGLGGAASGGGAPGGGVGTGSSLYGLAPSSAGLPSSRFPESGHYGLSS- 420

Query: 421 SGHPNHHHQQAGASPAPRVPPGGLYPNIPPYY 436
             + N HHQQAG SP PRVPPGG+YPN+PPYY
Sbjct: 421 --YQNQHHQQAGTSPMPRVPPGGMYPNVPPYY 440

The following BLAST results are available for this feature:

BLAST of CmaCh16G004220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UBA2C_ARATH	4.1e-125	59.14	UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1	[more]
UBA2B_ARATH	2.7e-39	36.51	UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1	[more]
UBA2A_ARATH	1.9e-37	34.49	UBP1-associated protein 2A OS=Arabidopsis thaliana GN=UBA2A PE=1 SV=1	[more]
UBA1A_ARATH	1.6e-23	45.19	UBP1-associated proteins 1A OS=Arabidopsis thaliana GN=UBA1A PE=1 SV=2	[more]
ROA0_HUMAN	5.0e-22	32.25	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	[more]

BLAST of CmaCh16G004220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYY6_CUCSA	1.9e-217	91.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083660 PE=4 SV=1	[more]
M5WGI4_PRUPE	1.0e-154	70.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005857mg PE=4 SV=1	[more]
A5ADJ5_VITVI	1.8e-143	67.18	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g01570 PE=4 SV=...	[more]
A0A0D2U197_GOSRA	1.6e-136	64.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G372200 PE=4 SV=1	[more]
A0A0D2R1K1_GOSRA	8.1e-136	64.54	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G063400 PE=4 SV=1	[more]

BLAST of CmaCh16G004220 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15010.1	2.3e-126	59.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G41060.1	1.5e-40	36.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G56860.3	1.1e-38	34.49	UBP1-associated protein 2A	[more]
AT2G22090.2	8.8e-25	45.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G19380.1	9.1e-22	29.41	RNA recognition motif (RRM)-containing protein	[more]

BLAST of CmaCh16G004220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438887\|ref\|XP_004137219.1\|	2.7e-217	91.72	PREDICTED: UBP1-associated protein 2C [Cucumis sativus]	[more]
gi\|659101647\|ref\|XP_008451717.1\|	1.1e-215	91.03	PREDICTED: UBP1-associated protein 2C [Cucumis melo]	[more]
gi\|1009161987\|ref\|XP_015899190.1\|	5.3e-165	72.63	PREDICTED: UBP1-associated protein 2C [Ziziphus jujuba]	[more]
gi\|595863695\|ref\|XP_007211635.1\|	1.5e-154	70.35	hypothetical protein PRUPE_ppa005857mg [Prunus persica]	[more]
gi\|645240221\|ref\|XP_008226506.1\|	3.2e-154	70.35	PREDICTED: UBP1-associated protein 2C [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008219	cell death
biological_process	GO:0006952	defense response
biological_process	GO:0009693	ethylene biosynthetic process
biological_process	GO:0010150	leaf senescence
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003729	mRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004220.1	CmaCh16G004220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 164..221 score: 5.8E-8coord: 72..139 score: 3.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 71..143 score: 3.5E-17coord: 163..235 score: 3.9
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 162..239 score: 13.072coord: 70..138 score: 14
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 64..145 score: 6.4E-19coord: 151..248 score: 5.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 149..264 score: 2.96E-17coord: 64..145 score: 5.78
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 426..433 score: 3.1E-124coord: 11..28 score: 3.1E-124coord: 67..244 score: 3.1E-124coord: 298..398 score: 3.1E
None	No IPR available	PANTHER	PTHR24012:SF490	UBP1-ASSOCIATED PROTEIN 2C	coord: 426..433 score: 3.1E-124coord: 11..28 score: 3.1E-124coord: 67..244 score: 3.1E-124coord: 298..398 score: 3.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G004220	Cucsa.273510	Cucumber (Gy14) v1	cgycmaB0759
CmaCh16G004220	Cla002434	Watermelon (97103) v1	cmawmB311
CmaCh16G004220	Csa4G083660	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G004220	MELO3C016101	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G004220	ClCG07G010010	Watermelon (Charleston Gray)	cmawcgB300
CmaCh16G004220	CSPI04G08100	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G004220	CmoCh04G006070	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G004220	CmoCh16G004540	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G004220	Lsi04G020240	Bottle gourd (USVL1VR-Ls)	cmalsiB311
CmaCh16G004220	Lsi07G002960	Bottle gourd (USVL1VR-Ls)	cmalsiB329
CmaCh16G004220	Cp4.1LG01g01520	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G004220	Cp4.1LG14g03700	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G004220	MELO3C016101.2	Melon (DHL92) v3.6.1	cmamedB351
CmaCh16G004220	CsaV3_4G008320	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G004220	Cla97C07G136700	Watermelon (97103) v2	cmawmbB350
CmaCh16G004220	Bhi09G002859	Wax gourd	cmawgoB0451
CmaCh16G004220	Bhi01G002548	Wax gourd	cmawgoB0435
CmaCh16G004220	CsGy4G007960	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G004220	Carg13169	Silver-seed gourd	carcmaB0053
CmaCh16G004220	Carg11353	Silver-seed gourd	carcmaB0924

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G004220	CmaCh04G005670	Cucurbita maxima (Rimu)	cmacmaB351

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G004220	Watermelon (97103) v2	cmawmbB340
CmaCh16G004220	Wax gourd	cmawgoB0437
CmaCh16G004220	Wild cucumber (PI 183967)	cmacpiB345
CmaCh16G004220	Watermelon (Charleston Gray)	cmawcgB288
CmaCh16G004220	Watermelon (97103) v1	cmawmB325
CmaCh16G004220	Cucumber (Gy14) v2	cgybcmaB500
CmaCh16G004220	Cucumber (Chinese Long) v3	cmacucB0396