CmoCh12G011440 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCATCACAACTTTTAAAGGGAACTGAGTGTTAAGAGCCAAACAAACCCTTCCCCTTCCCCTTCGCCACCTCTAGCAGCTTCTCTCGCCGGAAAAAATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGTGAGTTTCTTCAATTTCAAACACCATTGTCAGTATTATTTTTATTGTTCATCTTACCGTTTTCCGTTTATTAGCTGTTCTTCGATTAATACACGTTAAGGTCTCGAAAACAATTTAGTTTGAATCGTGTCAAAAATACGCAACGGGAAACACTCGCACTCTTTGTTAACACAAATCGTAAAGATATTACTTAGACACTCTATAGAAACTAAATGCACTCTTTGTTAACACCAATCATAAACAAATCACAAGACACTATGTAGAAACTACTTGCACTTTGTACTAAAACCTGCTAGTGGAGGAAGACCTCCTAAGGATAAGAGACATAGGGCCAACCCCATCCCTTGGAAGACTCAAGAAAGACAAGATCAATATTCCTTTACAGTCAGAAAAGAAGAAGAAACGGAAAACCCTCAAGATTAATGAGAGTGAACTCTCAGTCAATCCTCAAGAAGAAGAAATGAGAGTGAACCCTTGGTCTCTTTTCTTTCACTCGGTAAACTCAATCACTTGTCCCTGATGGAATGGAAAGAGCATCTTCGAAGCAGCATCGAATTCCATTGATTATGGATCACCTTCTTTTCACCAATCATCAGGAGATTACAAGACACTCTGTAGAAACTACTTGTACTCTGTGCTTTGACCAATGGTAAGGAGATTACAAAACACTCGGTACAAACTACTTGGCACTATATACTTTGGTCAATGGTAAAGAGATTACAAGACACTCTGTAGAAACTACTTGACACTGCTTTGAATTTCTTTTGAGATAAAAACGACTAAACAATCTATTCTTAAAATATCTAAATTTTTTTTCAAGATATCTTTATTCTAAATGAAAAAGCTCACCCCGGTCTTTAGATGAGAAAGCCCAACGATCCATTTATAGGAAATGTTATAACTCAACTCATTGTTCTTCTTTTAACGATGAACTACTCCGGTACAACAAGTTAAAGGGACCTCTACACTCTGTCTCCAGTGCGTAGGGCCGATCCCCATGTGCTCTAGAGGGAAGACCGAAAAATTTGTGTTAAACAGAAAGAAAGTAGGTTTTTGTCTTGTTTAGGCATTTGGTGTCCTACAATGTGTTCGTATAATTATTGGGTATAATTCTATTGGGTCAGTGATAATAGTTGTTACTCATTATCAAATAACAAAAAGACATAGTTAGTAGAAGATCGAACTATCGACCATTGAACGTGAAATTTTGTAGGATTGCCCGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGAATCACTCATAACATTTCTTCATCAAAATTTGATTTTGATTTACTAAATTGTTAATAAACAAGCGATTATCGCTATTTTAGTCTCGTTTTTTTAATGAAACGTTATTCCTCTCGAC TCCATCACAACTTTTAAAGGGAACTGAGTGTTAAGAGCCAAACAAACCCTTCCCCTTCCCCTTCGCCACCTCTAGCAGCTTCTCTCGCCGGAAAAAATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGATTGCCCGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGAATCACTCATAACATTTCTTCATCAAAATTTGATTTTGATTTACTAAATTGTTAATAAACAAGCGATTATCGCTATTTTAGTCTCGTTTTTTTAATGAAACGTTATTCCTCTCGAC ATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGATTGCCCGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGA
BLAST of CmoCh12G011440 vs. Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2) HSP 1 Score: 119.0 bits (297), Expect = 3.9e-26 Identity = 74/137 (54.01%), Postives = 89/137 (64.96%), Query Frame = 1
BLAST of CmoCh12G011440 vs. Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 4.0e-23 Identity = 65/135 (48.15%), Postives = 87/135 (64.44%), Query Frame = 1
BLAST of CmoCh12G011440 vs. Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 1.0e-18 Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1
BLAST of CmoCh12G011440 vs. Swiss-Prot
Match: PSBW_CHLRE (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 7.9e-11 Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 1
BLAST of CmoCh12G011440 vs. TrEMBL
Match: A0A0A0LJA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010330 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 1.1e-46 Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = 1
BLAST of CmoCh12G011440 vs. TrEMBL
Match: A0A061F2Y4_THECC (Photosystem II reaction center W protein, chloroplastic, putative OS=Theobroma cacao GN=TCM_026321 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 2.5e-27 Identity = 73/124 (58.87%), Postives = 88/124 (70.97%), Query Frame = 1
BLAST of CmoCh12G011440 vs. TrEMBL
Match: A0A0B0NI36_GOSAR (Photosystem II reaction center W, chloroplastic OS=Gossypium arboreum GN=F383_03690 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.1e-26 Identity = 73/124 (58.87%), Postives = 86/124 (69.35%), Query Frame = 1
BLAST of CmoCh12G011440 vs. TrEMBL
Match: A0A151S335_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_029055 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 7.9e-26 Identity = 70/131 (53.44%), Postives = 88/131 (67.18%), Query Frame = 1
BLAST of CmoCh12G011440 vs. TrEMBL
Match: V4MGE9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017409mg PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25 Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 1
BLAST of CmoCh12G011440 vs. TAIR10
Match: AT2G30570.1 (AT2G30570.1 photosystem II reaction center W) HSP 1 Score: 119.0 bits (297), Expect = 2.2e-27 Identity = 74/137 (54.01%), Postives = 89/137 (64.96%), Query Frame = 1
BLAST of CmoCh12G011440 vs. NCBI nr
Match: gi|659070655|ref|XP_008456049.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo]) HSP 1 Score: 199.5 bits (506), Expect = 3.6e-48 Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 1
BLAST of CmoCh12G011440 vs. NCBI nr
Match: gi|449442939|ref|XP_004139238.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic [Cucumis sativus]) HSP 1 Score: 194.1 bits (492), Expect = 1.5e-46 Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = 1
BLAST of CmoCh12G011440 vs. NCBI nr
Match: gi|659070657|ref|XP_008456055.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]) HSP 1 Score: 167.5 bits (423), Expect = 1.5e-38 Identity = 84/104 (80.77%), Postives = 94/104 (90.38%), Query Frame = 1
BLAST of CmoCh12G011440 vs. NCBI nr
Match: gi|590642555|ref|XP_007030550.1| (Photosystem II reaction center W protein, chloroplastic, putative [Theobroma cacao]) HSP 1 Score: 129.8 bits (325), Expect = 3.5e-27 Identity = 73/124 (58.87%), Postives = 88/124 (70.97%), Query Frame = 1
BLAST of CmoCh12G011440 vs. NCBI nr
Match: gi|728833072|gb|KHG12515.1| (Photosystem II reaction center W, chloroplastic [Gossypium arboreum]) HSP 1 Score: 126.7 bits (317), Expect = 3.0e-26 Identity = 73/124 (58.87%), Postives = 86/124 (69.35%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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