Cp4.1LG07g09600 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG07g09600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptionphotosystem II reaction center W
LocationCp4.1LG07 : 8697734 .. 8698030 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGGGAGGGATTAAGTGCAGGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCATGATTTCGGGGACGGTGGCGGCCGTGGCGACGACGGTGGTGGCAATGGCGGGGCCGGCGGTGGCGCTGGTGGATGAAAGGTTGAGCACAGAAGGAACAGGGCTGCCCTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCACTTTGA

mRNA sequence

ATGAAGAAGGGAGGGATTAAGTGCAGGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCATGATTTCGGGGACGGTGGCGGCCGTGGCGACGACGGTGGTGGCAATGGCGGGGCCGGCGGTGGCGCTGGTGGATGAAAGGTTGAGCACAGAAGGAACAGGGCTGCCCTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCACTTTGA

Coding sequence (CDS)

ATGAAGAAGGGAGGGATTAAGTGCAGGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCATGATTTCGGGGACGGTGGCGGCCGTGGCGACGACGGTGGTGGCAATGGCGGGGCCGGCGGTGGCGCTGGTGGATGAAAGGTTGAGCACAGAAGGAACAGGGCTGCCCTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCACTTTGA

Protein sequence

MKKGGIKCRLEEKQEGKRSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
BLAST of Cp4.1LG07g09600 vs. Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 4.9e-26
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1

Query: 2   KKGGIKCRLEEKQEGKRSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGL 61
           KKGG++C +E KQ       + +S    A  T V  M+ PA+ALVDER+STEGTGLPFGL
Sbjct: 39  KKGGVRCSMETKQGNVSVMGAGVSAAATAALTAV--MSNPAMALVDERMSTEGTGLPFGL 98

Query: 62  SNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           SNNLLGWIL G+FG IW  +FVY SSLEEDE+SGLSL
Sbjct: 99  SNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

BLAST of Cp4.1LG07g09600 vs. Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-23
Identity = 60/101 (59.41%), Postives = 74/101 (73.27%), Query Frame = 1

Query: 2   KKGGIKCRLEEK----QEGKRSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGL 61
           K+  + C +E K    +    + +SM +  +AA A   ++   PA+ALVDER+STEGTGL
Sbjct: 39  KRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATIS--NPAMALVDERMSTEGTGL 98

Query: 62  PFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           PFGLSNNLLGWIL G+FG IWALYFVYAS LEEDE+SGLSL
Sbjct: 99  PFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESGLSL 137

BLAST of Cp4.1LG07g09600 vs. Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-18
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 1

Query: 6   IKCRLEEKQEGKRSKESMI-SGTVAAVATTVVAMAG---PAVALVDERLSTEGTGLPFGL 65
           ++ R  E+     SKE+   +  V     +++AMA    PA+ALVDER+STEGTGL  GL
Sbjct: 27  MRARRSERVRCNYSKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEGTGLSLGL 86

Query: 66  SNNLLGWILAGMFGFIWALYFVYASSLEEDEDSG 96
           SNNLLGWIL G+FG IW+LY +Y S LEEDE+SG
Sbjct: 87  SNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

BLAST of Cp4.1LG07g09600 vs. Swiss-Prot
Match: PSBW_CHLRE (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.6e-11
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 1

Query: 22  SMISGTVAAVATTVVAMAG-PAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWAL 81
           S ++  VA ++T    +A  PA ALVDER++ +GTG PFG+++ +LGW+L G+FG +WA+
Sbjct: 36  SEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAI 95

Query: 82  YFVYASSLE--EDEDSGLSL 99
           +F+    L   ED D GL L
Sbjct: 96  WFIGQKDLGDFEDADDGLKL 115

BLAST of Cp4.1LG07g09600 vs. TrEMBL
Match: A0A0A0LJA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010330 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.5e-34
Identity = 80/99 (80.81%), Postives = 87/99 (87.88%), Query Frame = 1

Query: 1   MKKGGIKCRLEEKQEGKR-SKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPF 60
           MKKGGIKC +EEK EGK+ S+ESM+ GTV AVA   +A AGPAVALVDERLSTEGTGLPF
Sbjct: 36  MKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPF 95

Query: 61  GLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           GLSNNLLGWILA +F  IWALYFVYASSL+EDEDSGLSL
Sbjct: 96  GLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL 134

BLAST of Cp4.1LG07g09600 vs. TrEMBL
Match: A0A151S335_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_029055 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-26
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 1

Query: 2   KKGGIKCRLEEKQEGKRSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGL 61
           K GG++C +E    GK ++ SM  G   A A    AM+ PA+ALVDERLSTEGTGLPFGL
Sbjct: 39  KVGGVRCSME----GKENRSSMGMGASLAAAAWAAAMSSPAMALVDERLSTEGTGLPFGL 98

Query: 62  SNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           SNNLLGWIL G+FG IWALYF+YASSL+EDE+SGLSL
Sbjct: 99  SNNLLGWILFGVFGLIWALYFIYASSLDEDEESGLSL 131

BLAST of Cp4.1LG07g09600 vs. TrEMBL
Match: A0A061F2Y4_THECC (Photosystem II reaction center W protein, chloroplastic, putative OS=Theobroma cacao GN=TCM_026321 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-26
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = 1

Query: 4   GGIKCRLEEKQEGKRSK--ESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGL 63
           G ++C LE+K+         SM++  +AA A  +   AGPA+ALVDERLSTEGTGLPFGL
Sbjct: 39  GRVRCTLEQKRSASSMSLNPSMVASLMAAAAAAMTTTAGPAMALVDERLSTEGTGLPFGL 98

Query: 64  SNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           SNNLLGWIL G FG IWALYF+Y SSLEEDEDSGLSL
Sbjct: 99  SNNLLGWILFGAFGLIWALYFIYVSSLEEDEDSGLSL 135

BLAST of Cp4.1LG07g09600 vs. TrEMBL
Match: A0A0B0NI36_GOSAR (Photosystem II reaction center W, chloroplastic OS=Gossypium arboreum GN=F383_03690 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.8e-26
Identity = 65/97 (67.01%), Postives = 73/97 (75.26%), Query Frame = 1

Query: 4   GGIKCRLEEKQE--GKRSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGL 63
           G  +C LE+K    G  S  SM++  +AA A  V   A PA ALVDERLSTEGTGLPFGL
Sbjct: 39  GRARCSLEQKSSSNGLSSNPSMVASMMAAAAAAVTTAAAPATALVDERLSTEGTGLPFGL 98

Query: 64  SNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           SNNLLGWIL G+FG IWALYF+Y SSLEEDE+SGLSL
Sbjct: 99  SNNLLGWILFGVFGLIWALYFIYVSSLEEDEESGLSL 135

BLAST of Cp4.1LG07g09600 vs. TrEMBL
Match: C6SWM3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G032200 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-25
Identity = 67/99 (67.68%), Postives = 75/99 (75.76%), Query Frame = 1

Query: 2   KKGGIKCRLEEKQEG-KRSKESMIS-GTVAAVATTVVAMAGPAVALVDERLSTEGTGLPF 61
           K G + C +EEK    K S  SM+  G     A +  AM+GPA+ALVDERLSTEGTGLPF
Sbjct: 38  KVGRVSCSMEEKPSSVKESSSSMLGMGASLMAAASAAAMSGPAMALVDERLSTEGTGLPF 97

Query: 62  GLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           GLSNNLLGWIL G+FG IWALYFVY SSLEEDE+SGLSL
Sbjct: 98  GLSNNLLGWILFGVFGLIWALYFVYTSSLEEDEESGLSL 136

BLAST of Cp4.1LG07g09600 vs. TAIR10
Match: AT2G30570.1 (AT2G30570.1 photosystem II reaction center W)

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-27
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1

Query: 2   KKGGIKCRLEEKQEGKRSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGL 61
           KKGG++C +E KQ       + +S    A  T V  M+ PA+ALVDER+STEGTGLPFGL
Sbjct: 39  KKGGVRCSMETKQGNVSVMGAGVSAAATAALTAV--MSNPAMALVDERMSTEGTGLPFGL 98

Query: 62  SNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           SNNLLGWIL G+FG IW  +FVY SSLEEDE+SGLSL
Sbjct: 99  SNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

BLAST of Cp4.1LG07g09600 vs. NCBI nr
Match: gi|659070655|ref|XP_008456049.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 1

Query: 1   MKKGGIKCRLEEKQEGKRSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFG 60
           MK G IKC++EEK EGK+S+ESM+ GTVAAVA   +A AGPAVALVDER+STEGTGLPFG
Sbjct: 36  MKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFG 95

Query: 61  LSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           LSNNLLGWILAGMFG IWALYFVYASSL+EDEDSGLSL
Sbjct: 96  LSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 133

BLAST of Cp4.1LG07g09600 vs. NCBI nr
Match: gi|659070657|ref|XP_008456055.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 1

Query: 1   MKKGGIKCRLEEKQEGKRSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFG 60
           MK G IKC++EEK EGK+S+ESM+ GTVAAVA   +A AGPAVALVDER+STEGTGLPFG
Sbjct: 21  MKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFG 80

Query: 61  LSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           LSNNLLGWILAGMFG IWALYFVYASSL+EDEDSGLSL
Sbjct: 81  LSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 118

BLAST of Cp4.1LG07g09600 vs. NCBI nr
Match: gi|449442939|ref|XP_004139238.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 6.4e-34
Identity = 80/99 (80.81%), Postives = 87/99 (87.88%), Query Frame = 1

Query: 1   MKKGGIKCRLEEKQEGKR-SKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPF 60
           MKKGGIKC +EEK EGK+ S+ESM+ GTV AVA   +A AGPAVALVDERLSTEGTGLPF
Sbjct: 36  MKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPF 95

Query: 61  GLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           GLSNNLLGWILA +F  IWALYFVYASSL+EDEDSGLSL
Sbjct: 96  GLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL 134

BLAST of Cp4.1LG07g09600 vs. NCBI nr
Match: gi|1012337953|gb|KYP49216.1| (hypothetical protein KK1_029055 [Cajanus cajan])

HSP 1 Score: 125.9 bits (315), Expect = 3.8e-26
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 1

Query: 2   KKGGIKCRLEEKQEGKRSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGL 61
           K GG++C +E    GK ++ SM  G   A A    AM+ PA+ALVDERLSTEGTGLPFGL
Sbjct: 39  KVGGVRCSME----GKENRSSMGMGASLAAAAWAAAMSSPAMALVDERLSTEGTGLPFGL 98

Query: 62  SNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           SNNLLGWIL G+FG IWALYF+YASSL+EDE+SGLSL
Sbjct: 99  SNNLLGWILFGVFGLIWALYFIYASSLDEDEESGLSL 131

BLAST of Cp4.1LG07g09600 vs. NCBI nr
Match: gi|727476866|ref|XP_010414250.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic [Camelina sativa])

HSP 1 Score: 125.6 bits (314), Expect = 4.9e-26
Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 1

Query: 2   KKGGIKCRLEEKQEGKRSKESMISG-TVAAVATTVVAMAGPAVALVDERLSTEGTGLPFG 61
           KKGG++C +E KQEG  S  +M +G + AA A     M+ PA+ALVDER+STEGTGLPFG
Sbjct: 39  KKGGVRCSMETKQEGNVS--AMGAGVSAAATAALTAVMSNPAIALVDERMSTEGTGLPFG 98

Query: 62  LSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 99
           LSNNLLGWIL G+FG IW  YFVY SSLEEDE+SGLSL
Sbjct: 99  LSNNLLGWILFGVFGLIWTFYFVYTSSLEEDEESGLSL 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PSBW_ARATH4.9e-2662.89Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ... [more]
PSBW_SPIOL1.0e-2359.41Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=... [more]
PSBW_ORYSJ1.7e-1854.26Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j... [more]
PSBW_CHLRE7.6e-1145.00Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar... [more]
Match NameE-valueIdentityDescription
A0A0A0LJA2_CUCSA4.5e-3480.81Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010330 PE=4 SV=1[more]
A0A151S335_CAJCA2.6e-2667.01Uncharacterized protein OS=Cajanus cajan GN=KK1_029055 PE=4 SV=1[more]
A0A061F2Y4_THECC3.4e-2665.98Photosystem II reaction center W protein, chloroplastic, putative OS=Theobroma c... [more]
A0A0B0NI36_GOSAR5.8e-2667.01Photosystem II reaction center W, chloroplastic OS=Gossypium arboreum GN=F383_03... [more]
C6SWM3_SOYBN1.0e-2567.68Uncharacterized protein OS=Glycine max GN=GLYMA_10G032200 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G30570.12.8e-2762.89 photosystem II reaction center W[more]
Match NameE-valueIdentityDescription
gi|659070655|ref|XP_008456049.1|1.8e-3682.65PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ... [more]
gi|659070657|ref|XP_008456055.1|1.8e-3682.65PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ... [more]
gi|449442939|ref|XP_004139238.1|6.4e-3480.81PREDICTED: photosystem II reaction center W protein, chloroplastic [Cucumis sati... [more]
gi|1012337953|gb|KYP49216.1|3.8e-2667.01hypothetical protein KK1_029055 [Cajanus cajan][more]
gi|727476866|ref|XP_010414250.1|4.9e-2667.35PREDICTED: photosystem II reaction center W protein, chloroplastic [Camelina sat... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0016043 cellular component organization
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0015979 photosynthesis
biological_process GO:0042549 photosystem II stabilization
cellular_component GO:0009507 chloroplast
cellular_component GO:0009523 photosystem II
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016874 ligase activity
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g09600.1Cp4.1LG07g09600.1mRNA