CmoCh12G011440 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G011440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Photosystem II reaction center W
Location	Cmo_Chr12 : 10397606 .. 10399431 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATCACAACTTTTAAAGGGAACTGAGTGTTAAGAGCCAAACAAACCCTTCCCCTTCCCCTTCGCCACCTCTAGCAGCTTCTCTCGCCGGAAAAAATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGTGAGTTTCTTCAATTTCAAACACCATTGTCAGTATTATTTTTATTGTTCATCTTACCGTTTTCCGTTTATTAGCTGTTCTTCGATTAATACACGTTAAGGTCTCGAAAACAATTTAGTTTGAATCGTGTCAAAAATACGCAACGGGAAACACTCGCACTCTTTGTTAACACAAATCGTAAAGATATTACTTAGACACTCTATAGAAACTAAATGCACTCTTTGTTAACACCAATCATAAACAAATCACAAGACACTATGTAGAAACTACTTGCACTTTGTACTAAAACCTGCTAGTGGAGGAAGACCTCCTAAGGATAAGAGACATAGGGCCAACCCCATCCCTTGGAAGACTCAAGAAAGACAAGATCAATATTCCTTTACAGTCAGAAAAGAAGAAGAAACGGAAAACCCTCAAGATTAATGAGAGTGAACTCTCAGTCAATCCTCAAGAAGAAGAAATGAGAGTGAACCCTTGGTCTCTTTTCTTTCACTCGGTAAACTCAATCACTTGTCCCTGATGGAATGGAAAGAGCATCTTCGAAGCAGCATCGAATTCCATTGATTATGGATCACCTTCTTTTCACCAATCATCAGGAGATTACAAGACACTCTGTAGAAACTACTTGTACTCTGTGCTTTGACCAATGGTAAGGAGATTACAAAACACTCGGTACAAACTACTTGGCACTATATACTTTGGTCAATGGTAAAGAGATTACAAGACACTCTGTAGAAACTACTTGACACTGCTTTGAATTTCTTTTGAGATAAAAACGACTAAACAATCTATTCTTAAAATATCTAAATTTTTTTTCAAGATATCTTTATTCTAAATGAAAAAGCTCACCCCGGTCTTTAGATGAGAAAGCCCAACGATCCATTTATAGGAAATGTTATAACTCAACTCATTGTTCTTCTTTTAACGATGAACTACTCCGGTACAACAAGTTAAAGGGACCTCTACACTCTGTCTCCAGTGCGTAGGGCCGATCCCCATGTGCTCTAGAGGGAAGACCGAAAAATTTGTGTTAAACAGAAAGAAAGTAGGTTTTTGTCTTGTTTAGGCATTTGGTGTCCTACAATGTGTTCGTATAATTATTGGGTATAATTCTATTGGGTCAGTGATAATAGTTGTTACTCATTATCAAATAACAAAAAGACATAGTTAGTAGAAGATCGAACTATCGACCATTGAACGTGAAATTTTGTAGGATTGCCCGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGAATCACTCATAACATTTCTTCATCAAAATTTGATTTTGATTTACTAAATTGTTAATAAACAAGCGATTATCGCTATTTTAGTCTCGTTTTTTTAATGAAACGTTATTCCTCTCGAC

mRNA sequence

TCCATCACAACTTTTAAAGGGAACTGAGTGTTAAGAGCCAAACAAACCCTTCCCCTTCCCCTTCGCCACCTCTAGCAGCTTCTCTCGCCGGAAAAAATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGATTGCCCGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGAATCACTCATAACATTTCTTCATCAAAATTTGATTTTGATTTACTAAATTGTTAATAAACAAGCGATTATCGCTATTTTAGTCTCGTTTTTTTAATGAAACGTTATTCCTCTCGAC

Coding sequence (CDS)

ATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGATTGCCCGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGA

Homology

[Close]

BLAST of CmoCh12G011440 vs. Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-26
Identity = 74/137 (54.01%), Postives = 89/137 (64.96%), Query Frame = 1


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHR----LPVVQKMKKGGIKCKLEEKQEGKRSKE 60
           MAS   S S ++    P LL  P +A       LP + K KKGG++C +E KQ       
Sbjct: 1   MASFTASASTVSA-ARPALLLKPTVAISAPVLGLPPMGK-KKGGVRCSMETKQGNVSVMG 60

Query: 61  SLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALY 120
           + +S    A  T V  M+ PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FG IW  +
Sbjct: 61  AGVSAAATAALTAV--MSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 120

Query: 121 FVYASSLEEDEDSGLSL 134
           FVY SSLEEDE+SGLSL
Sbjct: 121 FVYTSSLEEDEESGLSL 133

[Close]

BLAST of CmoCh12G011440 vs. Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.0e-23
Identity = 65/135 (48.15%), Postives = 87/135 (64.44%), Query Frame = 1


Query: 3   STLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEK----QEGKRSKESL 62
           ++L+ +S + +  SP L  P +            K+  + C +E K    +    + +S+
Sbjct: 16  ASLVHNSRVGVSSSPILGLPSMT-----------KRSKVTCSIENKPSTTETTTTTNKSM 75

Query: 63  ISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFV 122
            +  +AA A   ++   PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FG IWALYFV
Sbjct: 76  GASLLAAAAAATIS--NPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFV 135

Query: 123 YASSLEEDEDSGLSL 134
           YAS LEEDE+SGLSL
Sbjct: 136 YASGLEEDEESGLSL 137

[Close]

BLAST of CmoCh12G011440 vs. Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-18
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1


Query: 30  LPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEG 89
           LP ++  +   ++C   ++     +       ++ AMA T    A PA+ALVDER+STEG
Sbjct: 24  LPQMRARRSERVRCNYSKEAATPAAAVKGAGASLLAMAAT----AAPAMALVDERMSTEG 83

Query: 90  TGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSG 131
           TGL  GLSNNLLGWIL G+FG IW+LY +Y S LEEDE+SG
Sbjct: 84  TGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of CmoCh12G011440 vs. Swiss-Prot
Match: PSBW_CHLRE (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-11
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 57  SLISGTVAAMATTVVAMAG-PAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWAL 116
           S ++  VA ++T    +A  PA ALVDER++ +GTG PFG+++ +LGW+L G+FG +WA+
Sbjct: 36  SEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAI 95

Query: 117 YFVYASSLE--EDEDSGLSL 134
           +F+    L   ED D GL L
Sbjct: 96  WFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of CmoCh12G011440 vs. TrEMBL
Match: A0A0A0LJA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010330 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-46
Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = 1


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKR-SKESLI 60
           MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  SGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120
            GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILA +F  IWALYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 134
           ASSL+EDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of CmoCh12G011440 vs. TrEMBL
Match: A0A061F2Y4_THECC (Photosystem II reaction center W protein, chloroplastic, putative OS=Theobroma cacao GN=TCM_026321 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-27
Identity = 73/124 (58.87%), Postives = 88/124 (70.97%), Query Frame = 1


Query: 12  TLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSK--ESLISGTVAAMATT 71
           TLKGS K+   P++    LPV+     G ++C LE+K+         S+++  +AA A  
Sbjct: 17  TLKGSYKVQSSPVLG---LPVMAT--NGRVRCTLEQKRSASSMSLNPSMVASLMAAAAAA 76

Query: 72  VVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDS 131
           +   AGPA+ALVDERLSTEGTGLPFGLSNNLLGWIL G FG IWALYF+Y SSLEEDEDS
Sbjct: 77  MTTTAGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGAFGLIWALYFIYVSSLEEDEDS 135

Query: 132 GLSL 134
           GLSL
Sbjct: 137 GLSL 135

[Close]

BLAST of CmoCh12G011440 vs. TrEMBL
Match: A0A0B0NI36_GOSAR (Photosystem II reaction center W, chloroplastic OS=Gossypium arboreum GN=F383_03690 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-26
Identity = 73/124 (58.87%), Postives = 86/124 (69.35%), Query Frame = 1


Query: 12  TLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQE--GKRSKESLISGTVAAMATT 71
           TLKGS K+    ++    LPV+     G  +C LE+K    G  S  S+++  +AA A  
Sbjct: 17  TLKGSNKVQSSKVLG---LPVMAT--NGRARCSLEQKSSSNGLSSNPSMVASMMAAAAAA 76

Query: 72  VVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDS 131
           V   A PA ALVDERLSTEGTGLPFGLSNNLLGWIL G+FG IWALYF+Y SSLEEDE+S
Sbjct: 77  VTTAAAPATALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYVSSLEEDEES 135

Query: 132 GLSL 134
           GLSL
Sbjct: 137 GLSL 135

[Close]

BLAST of CmoCh12G011440 vs. TrEMBL
Match: A0A151S335_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_029055 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-26
Identity = 70/131 (53.44%), Postives = 88/131 (67.18%), Query Frame = 1


Query: 3   STLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGT 62
           S   +   I+  G  +  P  + A+  L +    K GG++C +E    GK ++ S+  G 
Sbjct: 5   SAATTSPSISRAGLAQKRPLGVSASPVLGLAAMGKVGGVRCSME----GKENRSSMGMGA 64

Query: 63  VAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASS 122
             A A    AM+ PA+ALVDERLSTEGTGLPFGLSNNLLGWIL G+FG IWALYF+YASS
Sbjct: 65  SLAAAAWAAAMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASS 124

Query: 123 LEEDEDSGLSL 134
           L+EDE+SGLSL
Sbjct: 125 LDEDEESGLSL 131

[Close]

BLAST of CmoCh12G011440 vs. TrEMBL
Match: V4MGE9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017409mg PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25
Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 1


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHR----LPVVQKMKKGGIKCKLEEKQEGKRSKE 60
           MAS   S S I++   P LL  P +A       LP + K +KGG++C +E+KQE      
Sbjct: 1   MASFTASASTISV-ARPALLLKPTVAVSTPVLGLPPMSK-RKGGVRCSMEKKQENV---- 60

Query: 61  SLISGTVAAMATTVVA--MAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWA 120
           S++   V+A AT  +   M+ PA+ALVD+R+STEGTGLPFGLSNNLLGWIL G+FG IW 
Sbjct: 61  SVVGAGVSAAATAALTAVMSNPAMALVDDRMSTEGTGLPFGLSNNLLGWILFGVFGLIWT 120

Query: 121 LYFVYASSLEEDEDSGLSL 134
            YFVY SSLEEDE+SGLSL
Sbjct: 121 FYFVYTSSLEEDEESGLSL 133

[Close]

BLAST of CmoCh12G011440 vs. TAIR10
Match: AT2G30570.1 (AT2G30570.1 photosystem II reaction center W)

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-27
Identity = 74/137 (54.01%), Postives = 89/137 (64.96%), Query Frame = 1


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHR----LPVVQKMKKGGIKCKLEEKQEGKRSKE 60
           MAS   S S ++    P LL  P +A       LP + K KKGG++C +E KQ       
Sbjct: 1   MASFTASASTVSA-ARPALLLKPTVAISAPVLGLPPMGK-KKGGVRCSMETKQGNVSVMG 60

Query: 61  SLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALY 120
           + +S    A  T V  M+ PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FG IW  +
Sbjct: 61  AGVSAAATAALTAV--MSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 120

Query: 121 FVYASSLEEDEDSGLSL 134
           FVY SSLEEDE+SGLSL
Sbjct: 121 FVYTSSLEEDEESGLSL 133

[Close]

BLAST of CmoCh12G011440 vs. NCBI nr
Match: gi|659070655|ref|XP_008456049.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-48
Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 1


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLL HS + LKGS KLLP   MAA RLP +QKMK G IKCK+EEK EGK+S+ES++ 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAA+A   +A AGPAVALVDER+STEGTGLPFGLSNNLLGWILAGMFG IWALYFVYA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of CmoCh12G011440 vs. NCBI nr
Match: gi|449442939|ref|XP_004139238.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-46
Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = 1


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKR-SKESLI 60
           MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  SGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120
            GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILA +F  IWALYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 134
           ASSL+EDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of CmoCh12G011440 vs. NCBI nr
Match: gi|659070657|ref|XP_008456055.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-38
Identity = 84/104 (80.77%), Postives = 94/104 (90.38%), Query Frame = 1


Query: 30  LPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEG 89
           LP +QKMK G IKCK+EEK EGK+S+ES++ GTVAA+A   +A AGPAVALVDER+STEG
Sbjct: 15  LPTLQKMKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEG 74

Query: 90  TGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 134
           TGLPFGLSNNLLGWILAGMFG IWALYFVYASSL+EDEDSGLSL
Sbjct: 75  TGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 118

[Close]

BLAST of CmoCh12G011440 vs. NCBI nr
Match: gi|590642555|ref|XP_007030550.1| (Photosystem II reaction center W protein, chloroplastic, putative [Theobroma cacao])

HSP 1 Score: 129.8 bits (325), Expect = 3.5e-27
Identity = 73/124 (58.87%), Postives = 88/124 (70.97%), Query Frame = 1


Query: 12  TLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSK--ESLISGTVAAMATT 71
           TLKGS K+   P++    LPV+     G ++C LE+K+         S+++  +AA A  
Sbjct: 17  TLKGSYKVQSSPVLG---LPVMAT--NGRVRCTLEQKRSASSMSLNPSMVASLMAAAAAA 76

Query: 72  VVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDS 131
           +   AGPA+ALVDERLSTEGTGLPFGLSNNLLGWIL G FG IWALYF+Y SSLEEDEDS
Sbjct: 77  MTTTAGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGAFGLIWALYFIYVSSLEEDEDS 135

Query: 132 GLSL 134
           GLSL
Sbjct: 137 GLSL 135

[Close]

BLAST of CmoCh12G011440 vs. NCBI nr
Match: gi|728833072|gb|KHG12515.1| (Photosystem II reaction center W, chloroplastic [Gossypium arboreum])

HSP 1 Score: 126.7 bits (317), Expect = 3.0e-26
Identity = 73/124 (58.87%), Postives = 86/124 (69.35%), Query Frame = 1


Query: 12  TLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQE--GKRSKESLISGTVAAMATT 71
           TLKGS K+    ++    LPV+     G  +C LE+K    G  S  S+++  +AA A  
Sbjct: 17  TLKGSNKVQSSKVLG---LPVMAT--NGRARCSLEQKSSSNGLSSNPSMVASMMAAAAAA 76

Query: 72  VVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDS 131
           V   A PA ALVDERLSTEGTGLPFGLSNNLLGWIL G+FG IWALYF+Y SSLEEDE+S
Sbjct: 77  VTTAAAPATALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYVSSLEEDEES 135

Query: 132 GLSL 134
           GLSL
Sbjct: 137 GLSL 135

The following BLAST results are available for this feature:

BLAST of CmoCh12G011440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSBW_ARATH	3.9e-26	54.01	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
PSBW_SPIOL	4.0e-23	48.15	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSBW_ORYSJ	1.0e-18	49.50	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
PSBW_CHLRE	7.9e-11	45.00	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of CmoCh12G011440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJA2_CUCSA	1.1e-46	76.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010330 PE=4 SV=1	[more]
A0A061F2Y4_THECC	2.5e-27	58.87	Photosystem II reaction center W protein, chloroplastic, putative OS=Theobroma c...	[more]
A0A0B0NI36_GOSAR	2.1e-26	58.87	Photosystem II reaction center W, chloroplastic OS=Gossypium arboreum GN=F383_03...	[more]
A0A151S335_CAJCA	7.9e-26	53.44	Uncharacterized protein OS=Cajanus cajan GN=KK1_029055 PE=4 SV=1	[more]
V4MGE9_EUTSA	1.0e-25	54.68	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017409mg PE=4 SV=1	[more]

BLAST of CmoCh12G011440 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30570.1	2.2e-27	54.01	photosystem II reaction center W	[more]

BLAST of CmoCh12G011440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070655\|ref\|XP_008456049.1\|	3.6e-48	78.20	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
gi\|449442939\|ref\|XP_004139238.1\|	1.5e-46	76.87	PREDICTED: photosystem II reaction center W protein, chloroplastic [Cucumis sati...	[more]
gi\|659070657\|ref\|XP_008456055.1\|	1.5e-38	80.77	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
gi\|590642555\|ref\|XP_007030550.1\|	3.5e-27	58.87	Photosystem II reaction center W protein, chloroplastic, putative [Theobroma cac...	[more]
gi\|728833072\|gb\|KHG12515.1\|	3.0e-26	58.87	Photosystem II reaction center W, chloroplastic [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009806	PSII_PsbW_class2

Vocabulary: **Cellular Component**
Term	Definition
GO:0009507	chloroplast
GO:0009523	photosystem II

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G011440.1	CmoCh12G011440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 29..133 score: 2.8
None	No IPR available	PANTHER	PTHR34552	FAMILY NOT NAMED	coord: 41..133 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G011440	Cucsa.133180	Cucumber (Gy14) v1	cgycmoB0359
CmoCh12G011440	CmaCh12G011240	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G011440	CmaCh05G012080	Cucurbita maxima (Rimu)	cmacmoB763
CmoCh12G011440	Cla019799	Watermelon (97103) v1	cmowmB156
CmoCh12G011440	Cla014815	Watermelon (97103) v1	cmowmB132
CmoCh12G011440	Csa2G010330	Cucumber (Chinese Long) v2	cmocuB157
CmoCh12G011440	Csa7G378440	Cucumber (Chinese Long) v2	cmocuB187
CmoCh12G011440	MELO3C004388	Melon (DHL92) v3.5.1	cmomeB161
CmoCh12G011440	ClCG09G007590	Watermelon (Charleston Gray)	cmowcgB126
CmoCh12G011440	ClCG02G016710	Watermelon (Charleston Gray)	cmowcgB144
CmoCh12G011440	CSPI02G02880	Wild cucumber (PI 183967)	cmocpiB159
CmoCh12G011440	CSPI07G15760	Wild cucumber (PI 183967)	cmocpiB190
CmoCh12G011440	Lsi11G004380	Bottle gourd (USVL1VR-Ls)	cmolsiB148
CmoCh12G011440	Cp4.1LG00g04260	Cucurbita pepo (Zucchini)	cmocpeB141
CmoCh12G011440	Cp4.1LG00g04060	Cucurbita pepo (Zucchini)	cmocpeB142
CmoCh12G011440	Cp4.1LG11g09930	Cucurbita pepo (Zucchini)	cmocpeB147
CmoCh12G011440	Cp4.1LG07g09600	Cucurbita pepo (Zucchini)	cmocpeB175
CmoCh12G011440	MELO3C004388.2	Melon (DHL92) v3.6.1	cmomedB177
CmoCh12G011440	CsaV3_2G004030	Cucumber (Chinese Long) v3	cmocucB0185
CmoCh12G011440	CsaV3_7G027520	Cucumber (Chinese Long) v3	cmocucB0220
CmoCh12G011440	Cla97C02G042490	Watermelon (97103) v2	cmowmbB161
CmoCh12G011440	Cla97C09G170230	Watermelon (97103) v2	cmowmbB188
CmoCh12G011440	Bhi06G001529	Wax gourd	cmowgoB0171
CmoCh12G011440	CsGy7G014300	Cucumber (Gy14) v2	cgybcmoB891
CmoCh12G011440	CsGy2G002990	Cucumber (Gy14) v2	cgybcmoB170
CmoCh12G011440	Carg17599	Silver-seed gourd	carcmoB0973

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh12G011440	CmoCh05G012300	Cucurbita moschata (Rifu)	cmocmoB148

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G011440	Bottle gourd (USVL1VR-Ls)	cmolsiB142
CmoCh12G011440	Cucurbita moschata (Rifu)	cmocmoB086