Carg17599 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17599
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosystem ii reaction center w protein, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_183 : 554859 .. 556410 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACTATCCATCACAACTTTTAAAGGGAACTGAGTGTTAAGAGCCAAACAAACCCTTCCCCTTCCCCTTCGCCACCTCTAGCAGCTTCTCTCGCCGGAAAAAATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGTGAGTTTCTTCAATTTCAAACACCATTGTCAGTATTATTTTTATTGTTCATCTTACCGTTTTCCGTTTATTAGCTGTTCTTCGATTAATACACGTTAAGGTCTCGAAAACAATTTAGTTTGAATTGTGTCAAAAATATGAAACGGGAAACACTCGCACTCTTCGTTAACACCAATCATAAAGACATTACAAGACACTCTGTAGAAACTACTGGTACTCTGTGCTTTGATCAATGGTAAGGAGATTACAAAACACTCGGTACAAACTACTTGGCACTATATGCGGTAAGAAGATTACAAAACACTCTGTAGAAACTACTTGACACTCTGTGCTTTGAATTTTTTTTGAGATAAAAACGACTAAACAATCTATTCCTAAAATATCTAAATCTTTTTCCGGAGATATCTTTATTCTAAATGAAAAAGCTCACCCCCGAGAAAGCCCAACGATCCATTTATAGGAAATGTTATAACTCAACTCATTGTTCTTCTTTTAACGATGAACTACTCCGGTACAACAAGTTAAAGGGACCTTTACGCTCTGTCTCCAGTGCGTAAGGCCGATCCCCATGTGCTCTAGAGGGAAGACCGGAAAGTTTGTGTTAAGTAGAAAGAAAGTAGGTTTTTGTCTTGTTTAGGCATTTGGTGTCCTACAATGTGTTCGTATAATTATTGGGTTTAACTCTATTGGGCCAGTGATAATAGTTGTTACTCATTATCGAATAACGAAAAGACACAGTTAGTAGAAGATCGAACTATCGACCATTGAACGTGAAATTTTGTAGGATTGCCGGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGAATCACTCATAACATTTCTTCATCAAAATTTGATTTTGATTTACTAAATTGTTAATAAACAAGCGATTATCGCTATTTTAGTCTCGTTTTTTTTAATGAAACGTTATTCCTCTCGACGACCTTGACCAAAATTAGTAATGAAAATAAAATGTGGGAATCACTCGAACATGTGGGTCAGCTACAAATTAGGGGTGTTCATGTGAATCGAGAACTCGACCAACTTGAACTATGGGAATCGATTTGGGGTGTTGGTTCATGGGTTGAG

mRNA sequence

TCACTATCCATCACAACTTTTAAAGGGAACTGAGTGTTAAGAGCCAAACAAACCCTTCCCCTTCCCCTTCGCCACCTCTAGCAGCTTCTCTCGCCGGAAAAAATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGATTGCCGGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGAATCACTCATAACATTTCTTCATCAAAATTTGATTTTGATTTACTAAATTGTTAATAAACAAGCGATTATCGCTATTTTAGTCTCGTTTTTTTTAATGAAACGTTATTCCTCTCGACGACCTTGACCAAAATTAGTAATGAAAATAAAATGTGGGAATCACTCGAACATGTGGGTCAGCTACAAATTAGGGGTGTTCATGTGAATCGAGAACTCGACCAACTTGAACTATGGGAATCGATTTGGGGTGTTGGTTCATGGGTTGAG

Coding sequence (CDS)

ATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGATTGCCGGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGA

Protein sequence

MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

Homology

[Close]

BLAST of Carg17599 vs. NCBI nr
Match: XP_022937622.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 250.4 bits (638), Expect = 3.5e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60

Query: 61  GTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA
Sbjct: 61  GTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSLEEDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. NCBI nr
Match: XP_023521133.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023537055.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.8 bits (621), Expect = 3.3e-61
Identity = 126/133 (94.74%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLLSHSGITLKGSPKLLPPPLMAAHRL VVQKMKKGGIKC+LEEKQEGKRSKES+IS
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLSVVQKMKKGGIKCRLEEKQEGKRSKESMIS 60

Query: 61  GTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAA+ATTV   AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA
Sbjct: 61  GTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSLEEDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. NCBI nr
Match: XP_022966002.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 2.3e-51
Identity = 115/133 (86.47%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLLSHSGITLKGSPKLLPPPLMAAHRL VVQK KKGGIKC+LEEKQE K SKES+IS
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLSVVQKRKKGGIKCRLEEKQEVKSSKESMIS 60

Query: 61  GTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTV       XXX     ALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA
Sbjct: 61  GTVXXXXXXXXXXXXXXXALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSLEEDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. NCBI nr
Match: XP_008456049.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 103/133 (77.44%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLL HS + LKGS KLLP   MAA RLP +QKMK G IKCK+EEK EGK+S+ES++ 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 61  GTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAA+A      AGPAVALVDER+STEGTGLPFGLSNNLLGWILAGMFG IWALYFVYA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. NCBI nr
Match: XP_004139238.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic [Cucumis sativus] >KGN60797.1 hypothetical protein Csa_2G010330 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 6.6e-46
Identity = 102/134 (76.12%), Postives = 112/134 (83.58%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKR-SKESLI 60
           MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  SGTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120
            GTV A+A      AGPAVALVDERLSTEGTGLPFGLSNNLLGWILA +F  IWALYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 134
           ASSL+EDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of Carg17599 vs. TAIR10
Match: AT2G30570.1 (photosystem II reaction center W)

HSP 1 Score: 117.9 bits (294), Expect = 4.9e-27
Identity = 73/137 (53.28%), Postives = 88/137 (64.23%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHR----LPVVQKMKKGGIKCKLEEKQEGKRSKE 60
           MAS   S S ++    P LL  P +A       LP + K KKGG++C +E KQ       
Sbjct: 1   MASFTASASTVS-AARPALLLKPTVAISAPVLGLPPMGK-KKGGVRCSMETKQGNVSVMG 60

Query: 61  SLISGTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALY 120
           + +S    A  T V   + PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FG IW  +
Sbjct: 61  AGVSAAATAALTAV--MSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 120

Query: 121 FVYASSLEEDEDSGLSL 134
           FVY SSLEEDE+SGLSL
Sbjct: 121 FVYTSSLEEDEESGLSL 133

[Close]

BLAST of Carg17599 vs. Swiss-Prot
Match: sp|Q39194|PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 8.9e-26
Identity = 73/137 (53.28%), Postives = 88/137 (64.23%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHR----LPVVQKMKKGGIKCKLEEKQEGKRSKE 60
           MAS   S S ++    P LL  P +A       LP + K KKGG++C +E KQ       
Sbjct: 1   MASFTASASTVS-AARPALLLKPTVAISAPVLGLPPMGK-KKGGVRCSMETKQGNVSVMG 60

Query: 61  SLISGTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALY 120
           + +S    A  T V   + PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FG IW  +
Sbjct: 61  AGVSAAATAALTAV--MSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 120

Query: 121 FVYASSLEEDEDSGLSL 134
           FVY SSLEEDE+SGLSL
Sbjct: 121 FVYTSSLEEDEESGLSL 133

[Close]

BLAST of Carg17599 vs. Swiss-Prot
Match: sp|Q41387|PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.2e-23
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 74  AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 133
           + PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FG IWALYFVYAS LEEDE+SGLSL
Sbjct: 78  SNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESGLSL 137

[Close]

BLAST of Carg17599 vs. Swiss-Prot
Match: sp|Q5ZBY9|PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.0e-19
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 30  LPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVXXXAGPAVALVDERLSTEG 89
           LP ++  +   ++C   ++     +       ++ AMA T    A PA+ALVDER+STEG
Sbjct: 24  LPQMRARRSERVRCNYSKEAATPAAAVKGAGASLLAMAAT----AAPAMALVDERMSTEG 83

Query: 90  TGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSG 131
           TGL  GLSNNLLGWIL G+FG IW+LY +Y S LEEDE+SG
Sbjct: 84  TGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of Carg17599 vs. Swiss-Prot
Match: sp|Q9SPI9|PSBW_CHLRE (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 41  IKCKLEEKQEGKRSKESLISGTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNL 100
           + CK    +     K +++S   A +A      A PA ALVDER++ +GTG PFG+++ +
Sbjct: 27  VVCKATTVRSEVAKKVAMLSTLPATLA------AHPAFALVDERMNGDGTGRPFGVNDPV 86

Query: 101 LGWILAGMFGFIWALYFVYASSLE--EDEDSGLSL 134
           LGW+L G+FG +WA++F+    L   ED D GL L
Sbjct: 87  LGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of Carg17599 vs. TrEMBL
Match: tr|A0A1S3C2B0|A0A1S3C2B0_CUCME (photosystem II reaction center W protein, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496095 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.0e-47
Identity = 103/133 (77.44%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLL HS + LKGS KLLP   MAA RLP +QKMK G IKCK+EEK EGK+S+ES++ 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 61  GTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAA+A      AGPAVALVDER+STEGTGLPFGLSNNLLGWILAGMFG IWALYFVYA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. TrEMBL
Match: tr|A0A0A0LJA2|A0A0A0LJA2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 4.4e-46
Identity = 102/134 (76.12%), Postives = 112/134 (83.58%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKR-SKESLI 60
           MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  SGTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120
            GTV A+A      AGPAVALVDERLSTEGTGLPFGLSNNLLGWILA +F  IWALYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 134
           ASSL+EDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of Carg17599 vs. TrEMBL
Match: tr|A0A1S4E257|A0A1S4E257_CUCME (photosystem II reaction center W protein, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496095 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.5e-43
Identity = 102/155 (65.81%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHR----------------------LPVVQKMKK 60
           MASTLL HS + LKGS KLLP   MAA                        LP +QKMK 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPTFSLLLSVLMDRQISLSNKEEIGLPTLQKMKM 60

Query: 61  GGIKCKLEEKQEGKRSKESLISGTVAAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSN 120
           G IKCK+EEK EGK+S+ES++ GTVAA+A      AGPAVALVDER+STEGTGLPFGLSN
Sbjct: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120

Query: 121 NLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 134
           NLLGWILAGMFG IWALYFVYASSL+EDEDSGLSL
Sbjct: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of Carg17599 vs. TrEMBL
Match: tr|A0A2P4KLB8|A0A2P4KLB8_QUESU (Photosystem ii reaction center w protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_16158 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.6e-26
Identity = 68/130 (52.31%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 9   SGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQ-----EGKRSKESLISGTV 68
           +G+ LKGS  +   P++   R+     + +GG++C + EK      +G  S  S+++  +
Sbjct: 122 TGLVLKGSSGVQSSPVVGLPRM-----VTRGGVRCSMVEKTSSASGKGSISNTSMVASLM 181

Query: 69  AAMATTVXXXAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSL 128
           AA A+ V   AGPA+ALVDERL+TEGTGLPFGLSNN+LGWIL GMFG  WA YF+Y S+L
Sbjct: 182 AA-ASVVTATAGPAMALVDERLTTEGTGLPFGLSNNILGWILFGMFGLTWAFYFIYTSTL 241

Query: 129 EEDEDSGLSL 134
           EEDE+SGLSL
Sbjct: 242 EEDEESGLSL 245

[Close]

BLAST of Carg17599 vs. TrEMBL
Match: tr|V4L1T3|V4L1T3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009104mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-25
Identity = 70/119 (58.82%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 19  LLPPPLMAAHRLPV--VQKMKK--GGIKCKLEEKQEGKRSKESLISGTVAAMATTVXXXA 78
           LL P L A    P+  V +M K   G+KC +E KQE    K S    +  A   T    +
Sbjct: 14  LLKPSLAAISTEPIYGVPRMSKRSSGVKCSMETKQE----KSSTAGASAVAAMLTAVMSS 73

Query: 79  GPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 134
            PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FG IWALYF Y SSL+EDEDSGLSL
Sbjct: 74  SPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFTYTSSLDEDEDSGLSL 128

The following BLAST results are available for this feature:

BLAST of Carg17599 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937622.1	3.5e-63	100.00	photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata...	[more]
XP_023521133.1	3.3e-61	94.74	photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022966002.1	2.3e-51	86.47	photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_008456049.1	1.6e-47	77.44	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
XP_004139238.1	6.6e-46	76.12	PREDICTED: photosystem II reaction center W protein, chloroplastic [Cucumis sati...	[more]

BLAST of Carg17599 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30570.1	4.9e-27	53.28	photosystem II reaction center W	[more]

BLAST of Carg17599 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39194\|PSBW_ARATH	8.9e-26	53.28	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
sp\|Q41387\|PSBW_SPIOL	9.2e-23	85.00	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
sp\|Q5ZBY9\|PSBW_ORYSJ	8.0e-19	49.50	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
sp\|Q9SPI9\|PSBW_CHLRE	1.1e-10	40.00	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of Carg17599 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2B0\|A0A1S3C2B0_CUCME	1.0e-47	77.44	photosystem II reaction center W protein, chloroplastic-like isoform X2 OS=Cucum...	[more]
tr\|A0A0A0LJA2\|A0A0A0LJA2_CUCSA	4.4e-46	76.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=4 SV=1	[more]
tr\|A0A1S4E257\|A0A1S4E257_CUCME	3.5e-43	65.81	photosystem II reaction center W protein, chloroplastic-like isoform X1 OS=Cucum...	[more]
tr\|A0A2P4KLB8\|A0A2P4KLB8_QUESU	8.6e-26	52.31	Photosystem ii reaction center w protein, chloroplastic OS=Quercus suber OX=5833...	[more]
tr\|V4L1T3\|V4L1T3_EUTSA	4.3e-25	58.82	Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009104mg PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009507	chloroplast

Vocabulary: **INTERPRO**
Term	Definition
IPR009806	PSII_PsbW_class2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17599-RA	Carg17599-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 29..133 e-value: 2.9E-42 score: 143.7
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	FAMILY NOT NAMED	coord: 28..133

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17599	Cla019799	Watermelon (97103) v1	carwmB0714
Carg17599	Csa2G010330	Cucumber (Chinese Long) v2	carcuB0735
Carg17599	MELO3C004388	Melon (DHL92) v3.5.1	carmeB0711
Carg17599	ClCG02G016710	Watermelon (Charleston Gray)	carwcgB0692
Carg17599	CSPI02G02880	Wild cucumber (PI 183967)	carcpiB0751
Carg17599	Cucsa.133180	Cucumber (Gy14) v1	carcgyB0804
Carg17599	CmaCh05G012080	Cucurbita maxima (Rimu)	carcmaB1001
Carg17599	CmaCh12G011240	Cucurbita maxima (Rimu)	carcmaB1000
Carg17599	CmoCh12G011440	Cucurbita moschata (Rifu)	carcmoB0973
Carg17599	CmoCh05G012300	Cucurbita moschata (Rifu)	carcmoB0974
Carg17599	Lsi11G004380	Bottle gourd (USVL1VR-Ls)	carlsiB654
Carg17599	Cp4.1LG07g09600	Cucurbita pepo (Zucchini)	carcpeB1006
Carg17599	Cp4.1LG11g09930	Cucurbita pepo (Zucchini)	carcpeB1005
Carg17599	Cp4.1LG00g04060	Cucurbita pepo (Zucchini)	carcpeB1004
Carg17599	Cp4.1LG00g04260	Cucurbita pepo (Zucchini)	carcpeB1003
Carg17599	CsGy2G002990	Cucumber (Gy14) v2	carcgybB0713
Carg17599	MELO3C004388.2	Melon (DHL92) v3.6.1	carmedB0724
Carg17599	CsaV3_2G004030	Cucumber (Chinese Long) v3	carcucB0754
Carg17599	Cla97C02G042490	Watermelon (97103) v2	carwmbB0746
Carg17599	Cla97C09G170230	Watermelon (97103) v2	carwmbB0747
Carg17599	Bhi06G001529	Wax gourd	carwgoB0841

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None