CmoCh05G012300 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G012300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPhotosystem II reaction center W
LocationCmo_Chr05 : 9607118 .. 9608541 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATGGTGTCACAATTGCACTCTTACATAACGTTTGTAAGCGATTGTGCAGCACTCATTCTCACCCAGCAACTCCGAGTAGGAGGAATTGATGGCTAGTTGCATCCCTTTATAATACATTTTGAGGCATTTATGATTTTGAGGAAATGGAAACTATACCAGCATGACCGTGACCAATCGGTGTCTCCATTCTTTAGTTGGGCTGAACACGTGGATAGCAAAGATTGGATGAATGAGGATTGAGCAAAGGGAACTATTTGGGTGTTCACATATCCAAATTATGTGGTGCATAAACAAGAACACCTTTCCCCTCAACCTCTACCGGGCTTTTTTGGCCAGAAAAATGGCGTCCTCTCTGCTTTCTCCTTCCAGGATCTTACTCAAAGGATCATCCATGGTTCTTCCACCGCCATTAATGGCTGCTCGCAGTGAGTTCTTCAGTTCCAAATAGCATTTGCAGTACTTTTTATCATCCAATTCCACTAAAAGCTTTTACTTTCTTTCTCTTCATTCAAAGAGTTCTACTGGGTTCCCTCTGTTTTTCTAGTTTAATTATCATTTTCATCGTTCCGACAACAACGATATATACACAAACGTAGAAGTTAACGAAACTTCTAATCTTCCATGAACTTATACCCCTAATATGAAGTTCTAGATTTGTTAGCAACTCTTCTATCGACCATGGCTGAGGTGTAAAAGCCCAAGCCCACTACTGGCAGATATTGTCCGTTTTAGCTCGTTACGTATCCCTCGCGATTTTAAAACGCGTCTGTTAGGGAGAGATATGATTCATTTCTCTCTCCAACTGACATAAGATCTCAAAAGCCATCATATTCATTTTCGAACGAGGAAATAGGTTGTTAGAGAAAGAGCTGAGTCTTAGTGTAATTCCACTAATTTAGACATATGCTCTCGAACTAAACGGGAGTATCTGCAGAGTTACTCAAGATGAAGAAGGGAGCGATAAAGTGCAAGGTGGAGGAGAAGCGAGAAGGGAAGAGGTCAGAAGAAAGGATGGTTTCGGGGACGGTAGCGACGGTGGCGATGGCTACAATGGCAGCGGCGGGTCCGGCAGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTAAGCAACAACCTGCTAGGGTGGATTCTAGTTGGGATGTTTGGTTTAATTTGGTCTCTATACTTTGTTTATGCTTCGTCCTTAGATGAAGGTGACGACTCTGGTTTGTCACTCTGAATCAATCACCACATTTTAATCAAAGTTATGGTTAGTAAAAAAAAACACGACTATTATGTAACGACTCCTTGTTGTAGACCTTCGAGAAAATCGAAGGGAGAGTGAGACAACGATTTGATAGAATCAAGGTGTAACAGCTTAAGCTCACCGCTAATATATATTGTCCGCTTTAGCCCGTAC

mRNA sequence

GTATGGTGTCACAATTGCACTCTTACATAACGTTTGTAAGCGATTGTGCAGCACTCATTCTCACCCAGCAACTCCGAGTAGGAGGAATTGATGGCTAGTTGCATCCCTTTATAATACATTTTGAGGCATTTATGATTTTGAGGAAATGGAAACTATACCAGCATGACCGTGACCAATCGGTGTCTCCATTCTTTAGTTGGGCTGAACACGTGGATAGCAAAGATTGGATGAATGAGGATTGAGCAAAGGGAACTATTTGGGTGTTCACATATCCAAATTATGTGGTGCATAAACAAGAACACCTTTCCCCTCAACCTCTACCGGGCTTTTTTGGCCAGAAAAATGGCGTCCTCTCTGCTTTCTCCTTCCAGGATCTTACTCAAAGGATCATCCATGGTTCTTCCACCGCCATTAATGGCTGCTCGCAAGTTACTCAAGATGAAGAAGGGAGCGATAAAGTGCAAGGTGGAGGAGAAGCGAGAAGGGAAGAGGTCAGAAGAAAGGATGGTTTCGGGGACGGTAGCGACGGTGGCGATGGCTACAATGGCAGCGGCGGGTCCGGCAGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTAAGCAACAACCTGCTAGGGTGGATTCTAGTTGGGATGTTTGGTTTAATTTGGTCTCTATACTTTGTTTATGCTTCGTCCTTAGATGAAGGTGACGACTCTGGTTTGTCACTCTGAATCAATCACCACATTTTAATCAAAGTTATGGTTAGTAAAAAAAAACACGACTATTATGTAACGACTCCTTGTTGTAGACCTTCGAGAAAATCGAAGGGAGAGTGAGACAACGATTTGATAGAATCAAGGTGTAACAGCTTAAGCTCACCGCTAATATATATTGTCCGCTTTAGCCCGTAC

Coding sequence (CDS)

ATGAGGATTGAGCAAAGGGAACTATTTGGGTGTTCACATATCCAAATTATGTGGTGCATAAACAAGAACACCTTTCCCCTCAACCTCTACCGGGCTTTTTTGGCCAGAAAAATGGCGTCCTCTCTGCTTTCTCCTTCCAGGATCTTACTCAAAGGATCATCCATGGTTCTTCCACCGCCATTAATGGCTGCTCGCAAGTTACTCAAGATGAAGAAGGGAGCGATAAAGTGCAAGGTGGAGGAGAAGCGAGAAGGGAAGAGGTCAGAAGAAAGGATGGTTTCGGGGACGGTAGCGACGGTGGCGATGGCTACAATGGCAGCGGCGGGTCCGGCAGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTAAGCAACAACCTGCTAGGGTGGATTCTAGTTGGGATGTTTGGTTTAATTTGGTCTCTATACTTTGTTTATGCTTCGTCCTTAGATGAAGGTGACGACTCTGGTTTGTCACTCTGA
Homology
[Close]
BLAST of CmoCh05G012300 vs. Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 1 

Query: 38  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKM-----KKGAIKCKVEEKREGKRSEERM 97
           MAS   S S +     +++L P +  +  +L +     KKG ++C +E K +G  S    
Sbjct: 1   MASFTASASTVSAARPALLLKPTVAISAPVLGLPPMGKKKGGVRCSMETK-QGNVSVMGA 60

Query: 98  VSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFV 157
                AT A+ T   + PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FGLIW+ +FV
Sbjct: 61  GVSAAATAAL-TAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFV 120

Query: 158 YASSLDEGDDSGLSL 168
           Y SSL+E ++SGLSL
Sbjct: 121 YTSSLEEDEESGLSL 133

[Close]
BLAST of CmoCh05G012300 vs. Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.6e-21
Identity = 63/140 (45.00%), Postives = 89/140 (63.57%), Query Frame = 1 

Query: 32  AFLARKMASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRS--- 91
           A +    ++SL++ + ++      V   P++    + K  K  + C +E K     +   
Sbjct: 2   ATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSK--VTCSIENKPSTTETTTT 61

Query: 92  -EERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIW 151
             + M +  +A  A AT++   PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FGLIW
Sbjct: 62  TNKSMGASLLAAAAAATIS--NPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIW 121

Query: 152 SLYFVYASSLDEGDDSGLSL 168
           +LYFVYAS L+E ++SGLSL
Sbjct: 122 ALYFVYASGLEEDEESGLSL 137

[Close]
BLAST of CmoCh05G012300 vs. Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.8e-18
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 93  VSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFV 152
           V G  A++ +A  A A PA+ALVDER+STEGTGL  GLSNNLLGWIL+G+FGLIWSLY +
Sbjct: 50  VKGAGASL-LAMAATAAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTI 109

Query: 153 YASSLDEGDDSG 165
           Y S L+E ++SG
Sbjct: 110 YTSDLEEDEESG 120

[Close]
BLAST of CmoCh05G012300 vs. Swiss-Prot
Match: PSBW_CHLRE (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.4e-10
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 1 

Query: 75  IKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL 134
           + CK    R     +  M+S   AT+A      A PA ALVDER++ +GTG PFG+++ +
Sbjct: 27  VVCKATTVRSEVAKKVAMLSTLPATLA------AHPAFALVDERMNGDGTGRPFGVNDPV 86

Query: 135 LGWILVGMFGLIWSLYFVYASSLD--EGDDSGLSL 168
           LGW+L+G+FG +W+++F+    L   E  D GL L
Sbjct: 87  LGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL 115

[Close]
BLAST of CmoCh05G012300 vs. TrEMBL
Match: A0A0A0LJA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010330 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 101/134 (75.37%), Postives = 110/134 (82.09%), Query Frame = 1 

Query: 38  MASSLLSPSRILLKGSSMVLPPPLMAARKL---LKMKKGAIKCKVEEKREGKR-SEERMV 97
           MAS+LL  SR+LLKGSS +L  P MAA +L    KMKKG IKC VEEK EGK+ SEE MV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 98  SGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVY 157
            GTV  VAMA +AAAGPAVALVDERLSTEGTGLPFGLSNNLLGWIL  +F LIW+LYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 158 ASSLDEGDDSGLSL 168
           ASSLDE +DSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]
BLAST of CmoCh05G012300 vs. TrEMBL
Match: A0A061F2Y4_THECC (Photosystem II reaction center W protein, chloroplastic, putative OS=Theobroma cacao GN=TCM_026321 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.2e-24
Identity = 68/117 (58.12%), Postives = 80/117 (68.38%), Query Frame = 1 

Query: 53  SSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSE--ERMVSGTVATVAMATMAAAGP 112
           SS VL  P+MA         G ++C +E+KR          MV+  +A  A A    AGP
Sbjct: 26  SSPVLGLPVMATN-------GRVRCTLEQKRSASSMSLNPSMVASLMAAAAAAMTTTAGP 85

Query: 113 AVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL 168
           A+ALVDERLSTEGTGLPFGLSNNLLGWIL G FGLIW+LYF+Y SSL+E +DSGLSL
Sbjct: 86  AMALVDERLSTEGTGLPFGLSNNLLGWILFGAFGLIWALYFIYVSSLEEDEDSGLSL 135

[Close]
BLAST of CmoCh05G012300 vs. TrEMBL
Match: A0A0B0NI36_GOSAR (Photosystem II reaction center W, chloroplastic OS=Gossypium arboreum GN=F383_03690 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.3e-24
Identity = 68/117 (58.12%), Postives = 80/117 (68.38%), Query Frame = 1 

Query: 53  SSMVLPPPLMAARKLLKMKKGAIKCKVEEKRE--GKRSEERMVSGTVATVAMATMAAAGP 112
           SS VL  P+MA         G  +C +E+K    G  S   MV+  +A  A A   AA P
Sbjct: 26  SSKVLGLPVMATN-------GRARCSLEQKSSSNGLSSNPSMVASMMAAAAAAVTTAAAP 85

Query: 113 AVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL 168
           A ALVDERLSTEGTGLPFGLSNNLLGWIL G+FGLIW+LYF+Y SSL+E ++SGLSL
Sbjct: 86  ATALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYVSSLEEDEESGLSL 135

[Close]
BLAST of CmoCh05G012300 vs. TrEMBL
Match: D7TXF3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00060 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.0e-23
Identity = 74/141 (52.48%), Postives = 89/141 (63.12%), Query Frame = 1 

Query: 28  NLYRAFLARKMASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKR 87
           +L RA +A K  + + SP          VL  P MA       KKG ++C  EEK  G  
Sbjct: 12  SLVRASVASKGLNGISSP----------VLGLPAMA-------KKGRVRCMSEEKPCGSD 71

Query: 88  SEERMVSGTVATVAMATMAA-AGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLI 147
               +  G     A A +AA AGPA+ALVDERLSTEGTGLPFGLSNNLLGWIL G+FGLI
Sbjct: 72  MGSSISMGASLMAAAAAVAASAGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLI 131

Query: 148 WSLYFVYASSLDEGDDSGLSL 168
           W+LYF Y ++L+E D+SGLSL
Sbjct: 132 WALYFTYTATLEEDDESGLSL 135

[Close]
BLAST of CmoCh05G012300 vs. TrEMBL
Match: C6SWZ8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.0e-23
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1 

Query: 53  SSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAA--GP 112
           SS VL  P M        K G + C +EEK    +     + G  A++  A  AAA  GP
Sbjct: 24  SSPVLGLPAMG-------KVGRVSCSMEEKPYSVKESSSSMLGMGASLMAAASAAAMSGP 83

Query: 113 AVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL 168
           A+ALVDERLSTEGTGLPFGLSNNLLGWIL G+FGLIW+LYFVY S+L+EG++SGLSL
Sbjct: 84  AMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWTLYFVYTSTLEEGEESGLSL 133

[Close]
BLAST of CmoCh05G012300 vs. TAIR10
Match: AT2G30570.1 (AT2G30570.1 photosystem II reaction center W)

HSP 1 Score: 107.5 bits (267), Expect = 8.3e-24
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 1 

Query: 38  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKM-----KKGAIKCKVEEKREGKRSEERM 97
           MAS   S S +     +++L P +  +  +L +     KKG ++C +E K +G  S    
Sbjct: 1   MASFTASASTVSAARPALLLKPTVAISAPVLGLPPMGKKKGGVRCSMETK-QGNVSVMGA 60

Query: 98  VSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFV 157
                AT A+ T   + PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FGLIW+ +FV
Sbjct: 61  GVSAAATAAL-TAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFV 120

Query: 158 YASSLDEGDDSGLSL 168
           Y SSL+E ++SGLSL
Sbjct: 121 YTSSLEEDEESGLSL 133

[Close]
BLAST of CmoCh05G012300 vs. NCBI nr
Match: gi|659070655|ref|XP_008456049.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 6.8e-44
Identity = 104/133 (78.20%), Postives = 113/133 (84.96%), Query Frame = 1 

Query: 38  MASSLLSPSRILLKGSSMVLPPPLMAARKL---LKMKKGAIKCKVEEKREGKRSEERMVS 97
           MAS+LL  SR+LLKGSS +LP   MAA +L    KMK G IKCKVEEK EGK+SEE MV 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 98  GTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYA 157
           GTVA VAMA +AAAGPAVALVDER+STEGTGLPFGLSNNLLGWIL GMFGLIW+LYFVYA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 158 SSLDEGDDSGLSL 168
           SSLDE +DSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]
BLAST of CmoCh05G012300 vs. NCBI nr
Match: gi|449442939|ref|XP_004139238.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40
Identity = 101/134 (75.37%), Postives = 110/134 (82.09%), Query Frame = 1 

Query: 38  MASSLLSPSRILLKGSSMVLPPPLMAARKL---LKMKKGAIKCKVEEKREGKR-SEERMV 97
           MAS+LL  SR+LLKGSS +L  P MAA +L    KMKKG IKC VEEK EGK+ SEE MV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 98  SGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVY 157
            GTV  VAMA +AAAGPAVALVDERLSTEGTGLPFGLSNNLLGWIL  +F LIW+LYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 158 ASSLDEGDDSGLSL 168
           ASSLDE +DSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]
BLAST of CmoCh05G012300 vs. NCBI nr
Match: gi|659070657|ref|XP_008456055.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.6e-37
Identity = 86/101 (85.15%), Postives = 91/101 (90.10%), Query Frame = 1 

Query: 67  LLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGL 126
           L KMK G IKCKVEEK EGK+SEE MV GTVA VAMA +AAAGPAVALVDER+STEGTGL
Sbjct: 18  LQKMKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGL 77

Query: 127 PFGLSNNLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL 168
           PFGLSNNLLGWIL GMFGLIW+LYFVYASSLDE +DSGLSL
Sbjct: 78  PFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 118

[Close]
BLAST of CmoCh05G012300 vs. NCBI nr
Match: gi|590642555|ref|XP_007030550.1| (Photosystem II reaction center W protein, chloroplastic, putative [Theobroma cacao])

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-24
Identity = 68/117 (58.12%), Postives = 80/117 (68.38%), Query Frame = 1 

Query: 53  SSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSE--ERMVSGTVATVAMATMAAAGP 112
           SS VL  P+MA         G ++C +E+KR          MV+  +A  A A    AGP
Sbjct: 26  SSPVLGLPVMATN-------GRVRCTLEQKRSASSMSLNPSMVASLMAAAAAAMTTTAGP 85

Query: 113 AVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL 168
           A+ALVDERLSTEGTGLPFGLSNNLLGWIL G FGLIW+LYF+Y SSL+E +DSGLSL
Sbjct: 86  AMALVDERLSTEGTGLPFGLSNNLLGWILFGAFGLIWALYFIYVSSLEEDEDSGLSL 135

[Close]
BLAST of CmoCh05G012300 vs. NCBI nr
Match: gi|728833072|gb|KHG12515.1| (Photosystem II reaction center W, chloroplastic [Gossypium arboreum])

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 68/117 (58.12%), Postives = 80/117 (68.38%), Query Frame = 1 

Query: 53  SSMVLPPPLMAARKLLKMKKGAIKCKVEEKRE--GKRSEERMVSGTVATVAMATMAAAGP 112
           SS VL  P+MA         G  +C +E+K    G  S   MV+  +A  A A   AA P
Sbjct: 26  SSKVLGLPVMATN-------GRARCSLEQKSSSNGLSSNPSMVASMMAAAAAAVTTAAAP 85

Query: 113 AVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL 168
           A ALVDERLSTEGTGLPFGLSNNLLGWIL G+FGLIW+LYF+Y SSL+E ++SGLSL
Sbjct: 86  ATALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYVSSLEEDEESGLSL 135

The following BLAST results are available for this feature:
BLAST of CmoCh05G012300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBW_ARATH1.5e-2248.89Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ... [more]
PSBW_SPIOL3.6e-2145.00Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=... [more]
PSBW_ORYSJ3.8e-1865.28Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j... [more]
PSBW_CHLRE8.4e-1040.00Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar... [more]
BLAST of CmoCh05G012300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJA2_CUCSA1.1e-4075.37Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010330 PE=4 SV=1[more]
A0A061F2Y4_THECC4.2e-2458.12Photosystem II reaction center W protein, chloroplastic, putative OS=Theobroma c... [more]
A0A0B0NI36_GOSAR9.3e-2458.12Photosystem II reaction center W, chloroplastic OS=Gossypium arboreum GN=F383_03... [more]
D7TXF3_VITVI6.0e-2352.48Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00060 PE=4 SV=... [more]
C6SWZ8_SOYBN6.0e-2358.12Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
BLAST of CmoCh05G012300 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G30570.18.3e-2448.89 photosystem II reaction center W[more]
BLAST of CmoCh05G012300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659070655|ref|XP_008456049.1|6.8e-4478.20PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ... [more]
gi|449442939|ref|XP_004139238.1|1.6e-4075.37PREDICTED: photosystem II reaction center W protein, chloroplastic [Cucumis sati... [more]
gi|659070657|ref|XP_008456055.1|1.6e-3785.15PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ... [more]
gi|590642555|ref|XP_007030550.1|6.0e-2458.12Photosystem II reaction center W protein, chloroplastic, putative [Theobroma cac... [more]
gi|728833072|gb|KHG12515.1|1.3e-2358.12Photosystem II reaction center W, chloroplastic [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009806PSII_PsbW_class2
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
GO:0009523photosystem II
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042549 photosystem II stabilization
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G012300.1CmoCh05G012300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009806Photosystem II PsbW, class 2PFAMPF07123PsbWcoord: 67..167
score: 1.1
NoneNo IPR availablePANTHERPTHR34552FAMILY NOT NAMEDcoord: 34..167
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh05G012300Cucsa.133180Cucumber (Gy14) v1cgycmoB0362
CmoCh05G012300CmaCh12G011240Cucurbita maxima (Rimu)cmacmoB190
CmoCh05G012300CmaCh05G012080Cucurbita maxima (Rimu)cmacmoB787
CmoCh05G012300Cla019799Watermelon (97103) v1cmowmB757
CmoCh05G012300Csa2G010330Cucumber (Chinese Long) v2cmocuB783
CmoCh05G012300MELO3C004388Melon (DHL92) v3.5.1cmomeB724
CmoCh05G012300ClCG02G016710Watermelon (Charleston Gray)cmowcgB700
CmoCh05G012300CSPI02G02880Wild cucumber (PI 183967)cmocpiB787
CmoCh05G012300Lsi11G004380Bottle gourd (USVL1VR-Ls)cmolsiB706
CmoCh05G012300Cp4.1LG00g04060Cucurbita pepo (Zucchini)cmocpeB717
CmoCh05G012300Cp4.1LG00g04260Cucurbita pepo (Zucchini)cmocpeB714
CmoCh05G012300Cp4.1LG11g09930Cucurbita pepo (Zucchini)cmocpeB721
CmoCh05G012300Cp4.1LG07g09600Cucurbita pepo (Zucchini)cmocpeB742
CmoCh05G012300MELO3C004388.2Melon (DHL92) v3.6.1cmomedB821
CmoCh05G012300CsaV3_2G004030Cucumber (Chinese Long) v3cmocucB0924
CmoCh05G012300CsaV3_7G027520Cucumber (Chinese Long) v3cmocucB0950
CmoCh05G012300Cla97C02G042490Watermelon (97103) v2cmowmbB785
CmoCh05G012300Cla97C09G170230Watermelon (97103) v2cmowmbB805
CmoCh05G012300Bhi06G001529Wax gourdcmowgoB0919
CmoCh05G012300CsGy2G002990Cucumber (Gy14) v2cgybcmoB243
CmoCh05G012300Carg17599Silver-seed gourdcarcmoB0974
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh05G012300CmoCh12G011440Cucurbita moschata (Rifu)cmocmoB148
CmoCh05G012300CmoCh17G011960Cucurbita moschata (Rifu)cmocmoB305
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G012300Silver-seed gourdcarcmoB1442